Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02304

Experiment: NL-CCM, start OD=0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.1
2,425,413	+		MPMX19_02302	0.86	+0.4
2,425,413	+		MPMX19_02302	0.86	+0.4
2,425,413	+		MPMX19_02302	0.86	-0.5
2,425,413	+		MPMX19_02302	0.86	+0.2
2,425,413	+		MPMX19_02302	0.86	-0.3
2,425,413	+		MPMX19_02302	0.86	-0.5
2,425,413	+		MPMX19_02302	0.86	-1.8
2,425,413	+		MPMX19_02302	0.86	+0.8
2,425,414	-		MPMX19_02302	0.86	-0.4
2,425,414	-		MPMX19_02302	0.86	+0.9
2,425,414	-		MPMX19_02302	0.86	-0.7
2,425,414	-		MPMX19_02302	0.86	-0.8
2,425,414	-		MPMX19_02302	0.86	-2.5
2,425,414	-		MPMX19_02302	0.86	-0.8
2,425,414	-		MPMX19_02302	0.86	+0.8
2,425,414	-		MPMX19_02302	0.86	-0.8
2,425,414	-		MPMX19_02302	0.86	+0.6
2,425,451	+		MPMX19_02302	0.89	+0.4
2,425,451	+		MPMX19_02302	0.89	+1.4
2,425,452	-		MPMX19_02302	0.89	-1.5
2,425,452	-		MPMX19_02302	0.89	+1.3
2,425,452	-		MPMX19_02302	0.89	-0.4
2,425,452	-		MPMX19_02302	0.89	+0.8
2,425,452	-		MPMX19_02302	0.89	-0.7
2,425,452	-		MPMX19_02302	0.89	-1.1
2,425,452	-		MPMX19_02302	0.89	-2.2
2,425,452	-		MPMX19_02302	0.89	-1.0
2,425,452	-		MPMX19_02302	0.89	-0.8
2,425,452	-		MPMX19_02302	0.89	+2.0
2,425,452	-		MPMX19_02302	0.89	+0.5
2,425,500	+				-1.5
2,425,500	+				-1.8
2,425,500	+				-0.8
2,425,500	+				+0.8
2,425,500	+				-0.6
2,425,500	+				-0.7
2,425,500	+				+0.6
2,425,501	-				+0.5
2,425,501	-				+0.8
2,425,501	-				-0.2
2,425,501	-				-0.8
2,425,501	-				-0.6
2,425,593	+				+0.6
2,425,593	+				-0.4
2,425,593	+				-1.5
2,425,593	+				+0.2
2,425,593	+				-1.6
2,425,594	-				-0.0
2,425,594	-				-1.2
2,425,594	-				-0.3
2,425,594	-				+0.1
2,425,594	-				-0.6
2,425,594	-				+0.4
2,425,594	-				-2.2
2,425,594	-				-0.3
2,425,594	-				-1.3
2,425,594	-				-1.0
2,425,672	+				-0.7
2,425,672	+				-0.5
2,425,672	+				+0.2
2,425,672	+				-0.1
2,425,672	+				-1.5
2,425,673	-				+1.2
2,425,673	-				-0.0
2,425,673	-				+0.0
2,425,673	-				-0.4
2,425,746	-		MPMX19_02303	0.21	-1.2
2,425,746	-		MPMX19_02303	0.21	+0.2
2,425,831	+		MPMX19_02303	0.36	-1.4
2,425,832	-		MPMX19_02303	0.36	+0.1
2,425,832	-		MPMX19_02303	0.36	-1.0
2,425,873	+		MPMX19_02303	0.44	-0.8
2,425,873	+		MPMX19_02303	0.44	-1.2
2,425,873	+		MPMX19_02303	0.44	-1.2
2,425,874	-		MPMX19_02303	0.44	-1.4
2,425,874	-		MPMX19_02303	0.44	-0.5
2,425,942	-		MPMX19_02303	0.56	-0.7
2,426,235	+				+1.2
2,426,252	+				+1.4
2,426,252	+				-0.2
2,427,403	+				-1.8
2,427,403	+				-1.0
2,427,403	+				-0.4
2,427,403	+				+0.8
2,427,403	+				-0.7
2,427,404	-				-0.6
2,427,404	-				+0.2
2,427,404	-				-0.2
2,427,404	-				-0.9
2,427,404	-				-0.1
2,427,444	+				-0.1
2,427,444	+				-0.3
2,427,444	+				-0.0
2,427,444	+				-0.5
2,427,444	+				-1.2
2,427,445	-				+0.3
2,427,445	-				-0.3
2,427,445	-				-1.0
2,427,445	-				-0.3
2,427,445	-				+0.7
2,427,445	-				+0.1
2,427,445	-				+0.2
2,427,588	+		MPMX19_02305	0.11	-1.5
2,427,588	+		MPMX19_02305	0.11	+0.3
2,427,588	+		MPMX19_02305	0.11	-0.4
2,427,588	+		MPMX19_02305	0.11	-0.9
2,427,588	+		MPMX19_02305	0.11	-0.8
2,427,588	+		MPMX19_02305	0.11	+1.2
2,427,588	+		MPMX19_02305	0.11	-0.6
2,427,588	+		MPMX19_02305	0.11	-0.7
2,427,588	+		MPMX19_02305	0.11	-0.7
2,427,589	-		MPMX19_02305	0.11	-0.1
2,427,589	-		MPMX19_02305	0.11	+0.9
2,427,589	-		MPMX19_02305	0.11	-1.1
2,427,589	-		MPMX19_02305	0.11	-1.1
2,427,681	+		MPMX19_02305	0.25	-0.2
2,427,681	+		MPMX19_02305	0.25	+0.0
2,427,681	+		MPMX19_02305	0.25	-1.1
2,427,681	+		MPMX19_02305	0.25	+0.0
2,427,681	+		MPMX19_02305	0.25	-0.4
2,427,681	+		MPMX19_02305	0.25	-1.5
2,427,681	+		MPMX19_02305	0.25	+0.5
2,427,681	+		MPMX19_02305	0.25	+0.9
2,427,681	+		MPMX19_02305	0.25	+0.2
2,427,681	+		MPMX19_02305	0.25	+0.2
2,427,681	+		MPMX19_02305	0.25	+0.6
2,427,681	+		MPMX19_02305	0.25	-2.6
2,427,681	+		MPMX19_02305	0.25	+0.6
2,427,681	+		MPMX19_02305	0.25	-0.9
2,427,681	+		MPMX19_02305	0.25	-0.7
2,427,682	-		MPMX19_02305	0.25	-0.8
2,427,682	-		MPMX19_02305	0.25	-0.2
2,427,682	-		MPMX19_02305	0.25	+0.2
2,427,682	-		MPMX19_02305	0.25	+0.1
2,427,682	-		MPMX19_02305	0.25	-0.5
2,427,682	-		MPMX19_02305	0.25	-0.5
2,427,682	-		MPMX19_02305	0.25	+0.8
2,427,682	-		MPMX19_02305	0.25	+0.8
2,427,682	-		MPMX19_02305	0.25	-1.8
2,427,682	-		MPMX19_02305	0.25	-1.5
2,427,682	-		MPMX19_02305	0.25	-0.9
2,427,717	+		MPMX19_02305	0.31	-0.2
2,427,717	+		MPMX19_02305	0.31	-0.2
2,427,717	+		MPMX19_02305	0.31	-0.4
2,427,717	+		MPMX19_02305	0.31	-0.0
2,427,717	+		MPMX19_02305	0.31	-1.0
2,427,717	+		MPMX19_02305	0.31	-0.2
2,427,717	+		MPMX19_02305	0.31	-0.8
2,427,717	+		MPMX19_02305	0.31	+0.7
2,427,718	-		MPMX19_02305	0.31	-0.7
2,427,718	-		MPMX19_02305	0.31	-1.0
2,427,718	-		MPMX19_02305	0.31	-0.1
2,427,718	-		MPMX19_02305	0.31	-0.6
2,427,718	-		MPMX19_02305	0.31	-0.7
2,427,718	-		MPMX19_02305	0.31	+0.4
2,427,718	-		MPMX19_02305	0.31	-1.3
2,427,718	-		MPMX19_02305	0.31	-0.1
2,427,744	+		MPMX19_02305	0.35	+0.2
2,427,744	+		MPMX19_02305	0.35	+0.6
2,427,744	+		MPMX19_02305	0.35	+0.1
2,427,744	+		MPMX19_02305	0.35	-0.0
2,427,744	+		MPMX19_02305	0.35	+0.1
2,427,744	+		MPMX19_02305	0.35	-0.8
2,427,744	+		MPMX19_02305	0.35	-2.9
2,427,744	+		MPMX19_02305	0.35	-1.0
2,427,744	+		MPMX19_02305	0.35	+0.2
2,427,744	+		MPMX19_02305	0.35	+0.8
2,427,744	+		MPMX19_02305	0.35	-1.4
2,427,744	+		MPMX19_02305	0.35	-1.0
2,427,744	+		MPMX19_02305	0.35	+0.6
2,427,744	+		MPMX19_02305	0.35	+0.4
2,427,745	-		MPMX19_02305	0.35	-0.5
2,427,745	-		MPMX19_02305	0.35	+0.7
2,427,745	-		MPMX19_02305	0.35	-1.4
2,427,745	-		MPMX19_02305	0.35	-0.5
2,427,745	-		MPMX19_02305	0.35	+0.0
2,427,852	+		MPMX19_02305	0.51	-1.5
2,427,852	+		MPMX19_02305	0.51	-0.8
2,427,852	+		MPMX19_02305	0.51	+0.5
2,427,853	-		MPMX19_02305	0.51	-0.5
2,427,853	-		MPMX19_02305	0.51	-0.5
2,427,853	-		MPMX19_02305	0.51	+0.4
2,427,912	+		MPMX19_02305	0.60	-0.4
2,427,912	+		MPMX19_02305	0.60	-1.0
2,427,912	+		MPMX19_02305	0.60	-0.4
2,427,912	+		MPMX19_02305	0.60	-0.8
2,427,912	+		MPMX19_02305	0.60	+0.0
2,427,912	+		MPMX19_02305	0.60	-0.3
2,427,912	+		MPMX19_02305	0.60	-0.7
2,427,912	+		MPMX19_02305	0.60	-0.2
2,427,912	+		MPMX19_02305	0.60	-2.6
2,427,912	+		MPMX19_02305	0.60	-0.2
2,427,912	+		MPMX19_02305	0.60	-1.2
2,427,913	-		MPMX19_02305	0.60	+0.5
2,427,913	-		MPMX19_02305	0.60	-0.9
2,427,913	-		MPMX19_02305	0.60	+0.6
2,427,913	-		MPMX19_02305	0.60	+0.2
2,427,913	-		MPMX19_02305	0.60	-1.1
2,427,927	+		MPMX19_02305	0.63	-2.1
2,427,927	+		MPMX19_02305	0.63	-0.9
2,427,927	+		MPMX19_02305	0.63	-0.9
2,427,927	+		MPMX19_02305	0.63	-0.1
2,427,927	+		MPMX19_02305	0.63	-1.5
2,427,927	+		MPMX19_02305	0.63	+0.2
2,427,927	+		MPMX19_02305	0.63	-0.5
2,427,927	+		MPMX19_02305	0.63	-0.0
2,427,927	+		MPMX19_02305	0.63	+0.3
2,427,927	+		MPMX19_02305	0.63	-1.1
2,427,927	+		MPMX19_02305	0.63	+0.2
2,427,927	+		MPMX19_02305	0.63	-0.1
2,427,928	-		MPMX19_02305	0.63	-1.5
2,427,928	-		MPMX19_02305	0.63	-1.0
2,427,928	-		MPMX19_02305	0.63	-0.7
2,427,928	-		MPMX19_02305	0.63	-0.4
2,427,928	-		MPMX19_02305	0.63	+0.1
2,427,928	-		MPMX19_02305	0.63	-1.2
2,427,928	-		MPMX19_02305	0.63	+0.6
2,427,928	-		MPMX19_02305	0.63	-1.7
2,427,928	-		MPMX19_02305	0.63	+0.3
2,427,928	-		MPMX19_02305	0.63	-2.6
2,427,928	-		MPMX19_02305	0.63	-1.0
2,427,928	-		MPMX19_02305	0.63	-1.5
2,427,928	-		MPMX19_02305	0.63	-0.3
2,428,008	+		MPMX19_02305	0.75	-1.2
2,428,008	+		MPMX19_02305	0.75	-0.3
2,428,008	+		MPMX19_02305	0.75	-1.4
2,428,008	+		MPMX19_02305	0.75	+0.1
2,428,009	-		MPMX19_02305	0.75	-0.6
2,428,009	-		MPMX19_02305	0.75	-1.5
2,428,009	-		MPMX19_02305	0.75	-0.1
2,428,009	-		MPMX19_02305	0.75	+0.1
2,428,009	-		MPMX19_02305	0.75	-0.4
2,428,110	+				-2.7
2,428,110	+				-0.2
2,428,110	+				-0.6
2,428,110	+				-0.1
2,428,110	+				-0.4
2,428,110	+				-0.1
2,428,110	+				+0.1
2,428,110	+				-1.1
2,428,110	+				+1.1
2,428,110	+				-0.1
2,428,110	+				-0.6
2,428,110	+				-0.5
2,428,110	+				-2.5
2,428,110	+				-0.9
2,428,110	+				+0.8
2,428,110	+				-1.2
2,428,110	+				+0.7
2,428,110	+				-0.7
2,428,110	+				-1.4
2,428,110	+				-1.1
2,428,110	+				+1.6
2,428,110	+				-0.4
2,428,110	+				-1.4
2,428,110	+				+1.6
2,428,110	+				+1.1
2,428,110	+				-0.9
2,428,110	+				-1.8
2,428,110	+				-0.7
2,428,110	+				-0.5
2,428,110	+				-1.2
2,428,110	+				-1.7
2,428,110	+				-1.4
2,428,111	-				+1.0
2,428,111	-				+1.6
2,428,111	-				+0.2
2,428,111	-				-0.2
2,428,111	-				-0.8
2,428,111	-				-0.7
2,428,111	-				-1.9
2,428,111	-				-2.0
2,428,111	-				+0.4
2,428,111	-				-0.0
2,428,111	-				-0.7
2,428,111	-				+0.3
2,428,111	-				-0.3
2,428,111	-				-0.5
2,428,111	-				+0.0
2,428,111	-				-0.5
2,428,111	-				+0.6
2,428,111	-				+0.4
2,428,111	-				-0.2
2,428,111	-				+0.2
2,428,111	-				-1.2
2,428,111	-				-0.1
2,428,111	-				-0.8
2,428,111	-				-0.1
2,428,111	-				-0.9
2,428,111	-				+0.7
2,428,111	-				-0.3
2,428,111	-				-1.0
2,428,111	-				-0.5
2,428,170	+				+0.5
2,428,170	+				-0.1
2,428,170	+				-0.8
2,428,171	-				-0.2
2,428,171	-				-0.2
2,428,171	-				-0.4
2,428,171	-				-0.0
2,428,188	+				-0.0
2,428,188	+				-0.3
2,428,188	+				-1.8
2,428,188	+				-1.1
2,428,188	+				+1.1
2,428,188	+				-0.7
2,428,189	-				-2.0
2,428,204	+				+0.5
2,428,205	-				-0.9
2,428,205	-				-1.4
2,428,205	-				-0.1
2,428,205	-				-2.5
2,428,246	+				-1.9
2,428,246	+				+0.2
2,428,247	-				+0.1
2,428,247	-				-1.1
2,428,247	-				+1.2
2,428,305	+				-0.6
2,428,305	+				-0.6
2,428,305	+				-0.7
2,428,305	+				+0.3
2,428,306	-				-0.2
2,428,306	-				+0.0
2,428,344	+		MPMX19_02306	0.15	+0.1
2,428,344	+		MPMX19_02306	0.15	-0.8
2,428,344	+		MPMX19_02306	0.15	-0.4
2,428,345	-		MPMX19_02306	0.15	-1.6
2,428,345	-		MPMX19_02306	0.15	+1.0
2,428,345	-		MPMX19_02306	0.15	-0.2
2,428,345	-		MPMX19_02306	0.15	-0.8
2,428,345	-		MPMX19_02306	0.15	-2.5
2,428,345	-		MPMX19_02306	0.15	-0.4
2,428,345	-		MPMX19_02306	0.15	-0.6
2,428,345	-		MPMX19_02306	0.15	-0.2
2,428,345	-		MPMX19_02306	0.15	-1.2