Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02032

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02030 and MPMX19_02031 are separated by 130 nucleotidesMPMX19_02031 and MPMX19_02032 are separated by 51 nucleotidesMPMX19_02032 and MPMX19_02033 are separated by 94 nucleotidesMPMX19_02033 and MPMX19_02034 are separated by 128 nucleotides MPMX19_02030: MPMX19_02030 - CO-responsive transcriptional regulator RcoM, at 2,124,595 to 2,125,326 _02030 MPMX19_02031: MPMX19_02031 - tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ, at 2,125,457 to 2,126,233 _02031 MPMX19_02032: MPMX19_02032 - UDP-3-O-acylglucosamine N-acyltransferase, at 2,126,285 to 2,127,415 _02032 MPMX19_02033: MPMX19_02033 - hypothetical protein, at 2,127,510 to 2,127,974 _02033 MPMX19_02034: MPMX19_02034 - Peptidoglycan-associated lipoprotein, at 2,128,103 to 2,128,786 _02034 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -3 -2 -1 0 1at 2125.319 kb on + strandat 2125.319 kb on + strandat 2125.319 kb on + strandat 2125.319 kb on + strandat 2125.319 kb on + strandat 2125.319 kb on + strandat 2125.319 kb on + strandat 2125.320 kb on - strandat 2125.320 kb on - strandat 2125.320 kb on - strandat 2125.320 kb on - strandat 2125.320 kb on - strandat 2125.320 kb on - strandat 2125.337 kb on + strandat 2125.337 kb on + strandat 2125.337 kb on + strandat 2125.338 kb on - strandat 2125.338 kb on - strandat 2125.338 kb on - strandat 2125.339 kb on + strandat 2125.339 kb on + strandat 2125.339 kb on + strandat 2125.339 kb on + strandat 2125.339 kb on + strandat 2125.340 kb on - strandat 2125.340 kb on - strandat 2125.345 kb on + strandat 2125.345 kb on + strandat 2125.345 kb on + strandat 2125.345 kb on + strandat 2125.346 kb on - strandat 2125.346 kb on - strandat 2125.346 kb on - strandat 2125.346 kb on - strandat 2125.346 kb on - strandat 2125.357 kb on - strandat 2125.440 kb on + strandat 2125.440 kb on + strandat 2125.440 kb on + strandat 2125.440 kb on + strandat 2125.458 kb on + strandat 2125.888 kb on - strand, within MPMX19_02031at 2125.888 kb on - strand, within MPMX19_02031at 2125.888 kb on - strand, within MPMX19_02031at 2125.888 kb on - strand, within MPMX19_02031at 2125.942 kb on + strand, within MPMX19_02031at 2125.943 kb on - strand, within MPMX19_02031at 2126.286 kb on + strandat 2126.286 kb on + strandat 2126.286 kb on + strandat 2126.287 kb on - strandat 2126.287 kb on - strandat 2126.287 kb on - strandat 2126.287 kb on - strandat 2127.628 kb on + strand, within MPMX19_02033at 2127.628 kb on + strand, within MPMX19_02033at 2127.628 kb on + strand, within MPMX19_02033at 2127.628 kb on + strand, within MPMX19_02033at 2127.628 kb on + strand, within MPMX19_02033at 2127.628 kb on + strand, within MPMX19_02033at 2127.628 kb on + strand, within MPMX19_02033at 2127.629 kb on - strand, within MPMX19_02033at 2127.629 kb on - strand, within MPMX19_02033at 2127.629 kb on - strand, within MPMX19_02033at 2127.629 kb on - strand, within MPMX19_02033at 2127.629 kb on - strand, within MPMX19_02033at 2127.629 kb on - strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.631 kb on + strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.632 kb on - strand, within MPMX19_02033at 2127.706 kb on + strand, within MPMX19_02033at 2127.706 kb on + strand, within MPMX19_02033at 2127.706 kb on + strand, within MPMX19_02033at 2127.706 kb on + strand, within MPMX19_02033at 2127.707 kb on - strand, within MPMX19_02033at 2127.707 kb on - strand, within MPMX19_02033at 2127.775 kb on + strand, within MPMX19_02033at 2127.775 kb on + strand, within MPMX19_02033at 2127.775 kb on + strand, within MPMX19_02033at 2127.775 kb on + strand, within MPMX19_02033at 2127.776 kb on - strand, within MPMX19_02033at 2127.776 kb on - strand, within MPMX19_02033at 2127.841 kb on + strand, within MPMX19_02033at 2127.841 kb on + strand, within MPMX19_02033at 2127.841 kb on + strand, within MPMX19_02033at 2127.841 kb on + strand, within MPMX19_02033at 2127.841 kb on + strand, within MPMX19_02033at 2127.841 kb on + strand, within MPMX19_02033at 2127.841 kb on + strand, within MPMX19_02033at 2127.841 kb on + strand, within MPMX19_02033at 2127.842 kb on - strand, within MPMX19_02033at 2127.842 kb on - strand, within MPMX19_02033at 2127.842 kb on - strand, within MPMX19_02033at 2128.036 kb on + strandat 2128.036 kb on + strandat 2128.037 kb on - strandat 2128.236 kb on + strand, within MPMX19_02034at 2128.236 kb on + strand, within MPMX19_02034at 2128.236 kb on + strand, within MPMX19_02034at 2128.236 kb on + strand, within MPMX19_02034at 2128.236 kb on + strand, within MPMX19_02034at 2128.237 kb on - strand, within MPMX19_02034at 2128.237 kb on - strand, within MPMX19_02034at 2128.237 kb on - strand, within MPMX19_02034at 2128.237 kb on - strand, within MPMX19_02034

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
2,125,319 + -0.9
2,125,319 + -0.4
2,125,319 + +0.1
2,125,319 + -0.4
2,125,319 + -1.2
2,125,319 + -1.6
2,125,319 + -1.9
2,125,320 - +0.0
2,125,320 - -0.3
2,125,320 - +0.3
2,125,320 - -0.7
2,125,320 - -0.1
2,125,320 - +0.3
2,125,337 + -0.3
2,125,337 + -2.0
2,125,337 + -0.3
2,125,338 - -0.8
2,125,338 - -0.0
2,125,338 - -1.9
2,125,339 + -0.8
2,125,339 + -0.1
2,125,339 + -1.2
2,125,339 + -0.1
2,125,339 + +0.0
2,125,340 - -0.7
2,125,340 - -1.0
2,125,345 + +1.1
2,125,345 + -1.1
2,125,345 + -1.8
2,125,345 + -1.5
2,125,346 - +0.1
2,125,346 - -2.1
2,125,346 - -0.7
2,125,346 - +0.7
2,125,346 - -1.9
2,125,357 - -0.8
2,125,440 + -0.2
2,125,440 + -1.3
2,125,440 + -2.0
2,125,440 + -2.0
2,125,458 + -0.4
2,125,888 - MPMX19_02031 0.55 +0.1
2,125,888 - MPMX19_02031 0.55 +1.0
2,125,888 - MPMX19_02031 0.55 +1.1
2,125,888 - MPMX19_02031 0.55 +0.2
2,125,942 + MPMX19_02031 0.62 -1.1
2,125,943 - MPMX19_02031 0.63 -0.9
2,126,286 + +0.1
2,126,286 + -0.2
2,126,286 + -0.9
2,126,287 - +0.3
2,126,287 - +0.7
2,126,287 - -2.2
2,126,287 - -0.0
2,127,628 + MPMX19_02033 0.25 -0.9
2,127,628 + MPMX19_02033 0.25 -0.4
2,127,628 + MPMX19_02033 0.25 -1.7
2,127,628 + MPMX19_02033 0.25 +0.1
2,127,628 + MPMX19_02033 0.25 -0.1
2,127,628 + MPMX19_02033 0.25 +0.1
2,127,628 + MPMX19_02033 0.25 -0.3
2,127,629 - MPMX19_02033 0.26 -2.1
2,127,629 - MPMX19_02033 0.26 -0.7
2,127,629 - MPMX19_02033 0.26 +1.7
2,127,629 - MPMX19_02033 0.26 -1.5
2,127,629 - MPMX19_02033 0.26 -0.3
2,127,629 - MPMX19_02033 0.26 -0.4
2,127,631 + MPMX19_02033 0.26 -1.0
2,127,631 + MPMX19_02033 0.26 -0.3
2,127,631 + MPMX19_02033 0.26 +0.2
2,127,631 + MPMX19_02033 0.26 -0.5
2,127,631 + MPMX19_02033 0.26 +0.4
2,127,631 + MPMX19_02033 0.26 +0.7
2,127,631 + MPMX19_02033 0.26 -0.6
2,127,631 + MPMX19_02033 0.26 +1.2
2,127,631 + MPMX19_02033 0.26 -0.5
2,127,631 + MPMX19_02033 0.26 -1.1
2,127,631 + MPMX19_02033 0.26 -0.1
2,127,632 - MPMX19_02033 0.26 +0.7
2,127,632 - MPMX19_02033 0.26 +0.4
2,127,632 - MPMX19_02033 0.26 -1.3
2,127,632 - MPMX19_02033 0.26 -0.8
2,127,632 - MPMX19_02033 0.26 +0.1
2,127,632 - MPMX19_02033 0.26 +0.4
2,127,632 - MPMX19_02033 0.26 -0.3
2,127,632 - MPMX19_02033 0.26 -1.1
2,127,632 - MPMX19_02033 0.26 +0.5
2,127,632 - MPMX19_02033 0.26 -0.1
2,127,632 - MPMX19_02033 0.26 -3.0
2,127,706 + MPMX19_02033 0.42 -0.9
2,127,706 + MPMX19_02033 0.42 -0.5
2,127,706 + MPMX19_02033 0.42 -1.2
2,127,706 + MPMX19_02033 0.42 +0.9
2,127,707 - MPMX19_02033 0.42 -1.1
2,127,707 - MPMX19_02033 0.42 -1.1
2,127,775 + MPMX19_02033 0.57 -0.7
2,127,775 + MPMX19_02033 0.57 +0.7
2,127,775 + MPMX19_02033 0.57 +0.3
2,127,775 + MPMX19_02033 0.57 +1.7
2,127,776 - MPMX19_02033 0.57 -1.8
2,127,776 - MPMX19_02033 0.57 -0.8
2,127,841 + MPMX19_02033 0.71 +0.5
2,127,841 + MPMX19_02033 0.71 -2.1
2,127,841 + MPMX19_02033 0.71 -0.9
2,127,841 + MPMX19_02033 0.71 +0.9
2,127,841 + MPMX19_02033 0.71 +0.2
2,127,841 + MPMX19_02033 0.71 +0.7
2,127,841 + MPMX19_02033 0.71 +0.9
2,127,841 + MPMX19_02033 0.71 +0.4
2,127,842 - MPMX19_02033 0.71 -0.3
2,127,842 - MPMX19_02033 0.71 -1.1
2,127,842 - MPMX19_02033 0.71 -1.1
2,128,036 + -1.9
2,128,036 + -0.9
2,128,037 - -1.9
2,128,236 + MPMX19_02034 0.19 -0.3
2,128,236 + MPMX19_02034 0.19 -0.7
2,128,236 + MPMX19_02034 0.19 +0.3
2,128,236 + MPMX19_02034 0.19 -1.1
2,128,236 + MPMX19_02034 0.19 +1.1
2,128,237 - MPMX19_02034 0.20 -0.1
2,128,237 - MPMX19_02034 0.20 +0.7
2,128,237 - MPMX19_02034 0.20 +0.5
2,128,237 - MPMX19_02034 0.20 -0.1

Or see this region's nucleotide sequence