Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02008 and MPMX19_02009 overlap by 4 nucleotides MPMX19_02009 and MPMX19_02010 are separated by 52 nucleotides MPMX19_02010 and MPMX19_02011 are separated by 136 nucleotides
MPMX19_02008: MPMX19_02008 - Adenosylcobinamide-GDP ribazoletransferase, at 2,096,485 to 2,097,321
_02008
MPMX19_02009: MPMX19_02009 - Adenosylcobalamin/alpha-ribazole phosphatase, at 2,097,318 to 2,097,962
_02009
MPMX19_02010: MPMX19_02010 - hypothetical protein, at 2,098,015 to 2,098,545
_02010
MPMX19_02011: MPMX19_02011 - RNA helicase CrhR, at 2,098,682 to 2,100,046
_02011
Position (kb)
2098
2099 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2098.023 kb on + strand at 2098.023 kb on + strand at 2098.023 kb on + strand at 2098.023 kb on + strand at 2098.023 kb on + strand at 2098.023 kb on + strand at 2098.023 kb on + strand at 2098.023 kb on + strand at 2098.023 kb on + strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.024 kb on - strand at 2098.264 kb on + strand, within MPMX19_02010 at 2098.264 kb on + strand, within MPMX19_02010 at 2098.264 kb on + strand, within MPMX19_02010 at 2098.264 kb on + strand, within MPMX19_02010 at 2098.265 kb on - strand, within MPMX19_02010 at 2098.265 kb on - strand, within MPMX19_02010 at 2098.265 kb on - strand, within MPMX19_02010 at 2098.265 kb on - strand, within MPMX19_02010 at 2098.265 kb on - strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.288 kb on + strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.289 kb on - strand, within MPMX19_02010 at 2098.435 kb on + strand, within MPMX19_02010 at 2098.435 kb on + strand, within MPMX19_02010 at 2098.435 kb on + strand, within MPMX19_02010 at 2098.436 kb on - strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.465 kb on + strand, within MPMX19_02010 at 2098.466 kb on - strand, within MPMX19_02010 at 2098.466 kb on - strand, within MPMX19_02010 at 2098.466 kb on - strand, within MPMX19_02010 at 2098.466 kb on - strand, within MPMX19_02010 at 2098.471 kb on + strand, within MPMX19_02010 at 2098.471 kb on + strand, within MPMX19_02010 at 2098.471 kb on + strand, within MPMX19_02010 at 2098.472 kb on - strand, within MPMX19_02010 at 2098.472 kb on - strand, within MPMX19_02010 at 2098.472 kb on - strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.477 kb on + strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.478 kb on - strand, within MPMX19_02010 at 2098.582 kb on + strand at 2098.582 kb on + strand at 2098.582 kb on + strand at 2098.583 kb on - strand at 2098.583 kb on - strand at 2098.583 kb on - strand at 2098.639 kb on + strand at 2098.639 kb on + strand at 2098.639 kb on + strand at 2098.640 kb on - strand at 2098.650 kb on - strand at 2098.679 kb on + strand at 2098.680 kb on - strand at 2098.680 kb on - strand at 2098.782 kb on + strand at 2098.782 kb on + strand at 2098.782 kb on + strand at 2098.782 kb on + strand at 2098.783 kb on - strand at 2098.965 kb on + strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011 at 2099.068 kb on - strand, within MPMX19_02011
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,098,023 + -0.8 2,098,023 + -1.8 2,098,023 + -0.9 2,098,023 + +0.6 2,098,023 + +0.6 2,098,023 + -0.7 2,098,023 + +0.4 2,098,023 + +0.8 2,098,023 + -0.1 2,098,024 - +0.2 2,098,024 - -1.5 2,098,024 - +0.2 2,098,024 - -0.3 2,098,024 - +0.2 2,098,024 - -0.1 2,098,024 - +1.1 2,098,024 - -1.4 2,098,024 - -0.2 2,098,024 - +0.2 2,098,024 - +0.1 2,098,024 - +0.5 2,098,024 - -0.4 2,098,264 + MPMX19_02010 0.47 -1.7 2,098,264 + MPMX19_02010 0.47 +0.6 2,098,264 + MPMX19_02010 0.47 -0.2 2,098,264 + MPMX19_02010 0.47 -0.7 2,098,265 - MPMX19_02010 0.47 +0.2 2,098,265 - MPMX19_02010 0.47 +0.8 2,098,265 - MPMX19_02010 0.47 +1.6 2,098,265 - MPMX19_02010 0.47 +0.5 2,098,265 - MPMX19_02010 0.47 -0.3 2,098,288 + MPMX19_02010 0.51 -0.4 2,098,288 + MPMX19_02010 0.51 -1.4 2,098,288 + MPMX19_02010 0.51 -1.1 2,098,288 + MPMX19_02010 0.51 -0.1 2,098,288 + MPMX19_02010 0.51 -1.4 2,098,288 + MPMX19_02010 0.51 +0.1 2,098,288 + MPMX19_02010 0.51 -0.5 2,098,288 + MPMX19_02010 0.51 +0.6 2,098,288 + MPMX19_02010 0.51 -1.4 2,098,288 + MPMX19_02010 0.51 -0.3 2,098,288 + MPMX19_02010 0.51 -2.2 2,098,288 + MPMX19_02010 0.51 -0.3 2,098,288 + MPMX19_02010 0.51 -0.2 2,098,288 + MPMX19_02010 0.51 -0.5 2,098,288 + MPMX19_02010 0.51 -0.4 2,098,288 + MPMX19_02010 0.51 +0.1 2,098,288 + MPMX19_02010 0.51 +0.5 2,098,288 + MPMX19_02010 0.51 -0.8 2,098,288 + MPMX19_02010 0.51 -1.3 2,098,288 + MPMX19_02010 0.51 -0.8 2,098,288 + MPMX19_02010 0.51 -1.2 2,098,288 + MPMX19_02010 0.51 -1.3 2,098,288 + MPMX19_02010 0.51 -0.2 2,098,289 - MPMX19_02010 0.52 -1.7 2,098,289 - MPMX19_02010 0.52 -1.4 2,098,289 - MPMX19_02010 0.52 +0.8 2,098,289 - MPMX19_02010 0.52 -0.8 2,098,289 - MPMX19_02010 0.52 -0.4 2,098,289 - MPMX19_02010 0.52 -0.4 2,098,289 - MPMX19_02010 0.52 -0.2 2,098,289 - MPMX19_02010 0.52 -0.4 2,098,289 - MPMX19_02010 0.52 +0.5 2,098,289 - MPMX19_02010 0.52 -1.5 2,098,289 - MPMX19_02010 0.52 -1.1 2,098,289 - MPMX19_02010 0.52 -0.7 2,098,289 - MPMX19_02010 0.52 -1.0 2,098,289 - MPMX19_02010 0.52 -0.7 2,098,289 - MPMX19_02010 0.52 +0.2 2,098,289 - MPMX19_02010 0.52 -1.1 2,098,289 - MPMX19_02010 0.52 -0.0 2,098,289 - MPMX19_02010 0.52 +0.1 2,098,289 - MPMX19_02010 0.52 -0.9 2,098,289 - MPMX19_02010 0.52 -0.3 2,098,289 - MPMX19_02010 0.52 -0.2 2,098,289 - MPMX19_02010 0.52 -0.1 2,098,289 - MPMX19_02010 0.52 -0.7 2,098,289 - MPMX19_02010 0.52 -1.0 2,098,289 - MPMX19_02010 0.52 -0.9 2,098,289 - MPMX19_02010 0.52 +0.6 2,098,289 - MPMX19_02010 0.52 -0.7 2,098,289 - MPMX19_02010 0.52 -0.2 2,098,289 - MPMX19_02010 0.52 -0.2 2,098,289 - MPMX19_02010 0.52 -1.4 2,098,435 + MPMX19_02010 0.79 +0.1 2,098,435 + MPMX19_02010 0.79 -0.8 2,098,435 + MPMX19_02010 0.79 -0.1 2,098,436 - MPMX19_02010 0.79 +0.6 2,098,465 + MPMX19_02010 0.85 -1.0 2,098,465 + MPMX19_02010 0.85 -0.2 2,098,465 + MPMX19_02010 0.85 -0.0 2,098,465 + MPMX19_02010 0.85 -0.5 2,098,465 + MPMX19_02010 0.85 -2.4 2,098,465 + MPMX19_02010 0.85 -0.2 2,098,465 + MPMX19_02010 0.85 -1.7 2,098,465 + MPMX19_02010 0.85 +0.2 2,098,465 + MPMX19_02010 0.85 -0.9 2,098,466 - MPMX19_02010 0.85 -0.5 2,098,466 - MPMX19_02010 0.85 +0.1 2,098,466 - MPMX19_02010 0.85 +0.0 2,098,466 - MPMX19_02010 0.85 -0.5 2,098,471 + MPMX19_02010 0.86 -1.4 2,098,471 + MPMX19_02010 0.86 -0.8 2,098,471 + MPMX19_02010 0.86 -0.1 2,098,472 - MPMX19_02010 0.86 -0.5 2,098,472 - MPMX19_02010 0.86 -1.7 2,098,472 - MPMX19_02010 0.86 +1.2 2,098,477 + MPMX19_02010 0.87 -0.6 2,098,477 + MPMX19_02010 0.87 -1.4 2,098,477 + MPMX19_02010 0.87 -2.3 2,098,477 + MPMX19_02010 0.87 -1.6 2,098,477 + MPMX19_02010 0.87 +0.5 2,098,477 + MPMX19_02010 0.87 +0.1 2,098,477 + MPMX19_02010 0.87 -2.2 2,098,477 + MPMX19_02010 0.87 +0.2 2,098,477 + MPMX19_02010 0.87 -1.9 2,098,477 + MPMX19_02010 0.87 -1.3 2,098,477 + MPMX19_02010 0.87 -1.5 2,098,478 - MPMX19_02010 0.87 -0.9 2,098,478 - MPMX19_02010 0.87 -2.1 2,098,478 - MPMX19_02010 0.87 -0.6 2,098,478 - MPMX19_02010 0.87 -1.4 2,098,478 - MPMX19_02010 0.87 +0.4 2,098,478 - MPMX19_02010 0.87 -1.8 2,098,478 - MPMX19_02010 0.87 -0.5 2,098,478 - MPMX19_02010 0.87 -0.7 2,098,478 - MPMX19_02010 0.87 +0.4 2,098,478 - MPMX19_02010 0.87 -0.5 2,098,582 + -0.3 2,098,582 + -0.5 2,098,582 + -1.7 2,098,583 - +0.9 2,098,583 - +0.1 2,098,583 - -0.2 2,098,639 + +0.1 2,098,639 + +0.7 2,098,639 + -2.4 2,098,640 - -0.5 2,098,650 - -1.2 2,098,679 + +0.6 2,098,680 - -0.6 2,098,680 - -0.0 2,098,782 + -1.9 2,098,782 + +1.4 2,098,782 + -0.4 2,098,782 + +0.1 2,098,783 - -0.2 2,098,965 + MPMX19_02011 0.21 -1.3 2,099,068 - MPMX19_02011 0.28 -0.7 2,099,068 - MPMX19_02011 0.28 +0.1 2,099,068 - MPMX19_02011 0.28 +1.8 2,099,068 - MPMX19_02011 0.28 +0.1 2,099,068 - MPMX19_02011 0.28 +0.2 2,099,068 - MPMX19_02011 0.28 -1.5 2,099,068 - MPMX19_02011 0.28 -0.6 2,099,068 - MPMX19_02011 0.28 -1.0 2,099,068 - MPMX19_02011 0.28 -1.4
Or see this region's nucleotide sequence