Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01993

Experiment: NL-CCM, start OD=0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.1
2,080,310	+		MPMX19_01992	0.56	-0.0
2,080,310	+		MPMX19_01992	0.56	-0.1
2,080,311	-		MPMX19_01992	0.56	-0.6
2,080,311	-		MPMX19_01992	0.56	+0.9
2,080,311	-		MPMX19_01992	0.56	+1.1
2,080,311	-		MPMX19_01992	0.56	-0.2
2,080,328	+		MPMX19_01992	0.57	+0.4
2,080,328	+		MPMX19_01992	0.57	-1.9
2,080,328	+		MPMX19_01992	0.57	-1.5
2,080,328	+		MPMX19_01992	0.57	+1.0
2,080,328	+		MPMX19_01992	0.57	+0.3
2,080,328	+		MPMX19_01992	0.57	+0.2
2,080,328	+		MPMX19_01992	0.57	+1.8
2,080,328	+		MPMX19_01992	0.57	+0.1
2,080,328	+		MPMX19_01992	0.57	-0.4
2,080,328	+		MPMX19_01992	0.57	-0.1
2,080,328	+		MPMX19_01992	0.57	+0.2
2,080,328	+		MPMX19_01992	0.57	+1.2
2,080,328	+		MPMX19_01992	0.57	-0.6
2,080,328	+		MPMX19_01992	0.57	-1.1
2,080,329	-		MPMX19_01992	0.57	-1.4
2,080,329	-		MPMX19_01992	0.57	+0.2
2,080,329	-		MPMX19_01992	0.57	+1.3
2,080,329	-		MPMX19_01992	0.57	-0.5
2,080,329	-		MPMX19_01992	0.57	+0.2
2,080,329	-		MPMX19_01992	0.57	-0.4
2,080,329	-		MPMX19_01992	0.57	-1.3
2,080,329	-		MPMX19_01992	0.57	-0.2
2,080,329	-		MPMX19_01992	0.57	-0.4
2,080,445	+		MPMX19_01992	0.67	+0.1
2,080,445	+		MPMX19_01992	0.67	+0.2
2,080,445	+		MPMX19_01992	0.67	-0.6
2,080,445	+		MPMX19_01992	0.67	-1.7
2,080,445	+		MPMX19_01992	0.67	-0.8
2,080,445	+		MPMX19_01992	0.67	+0.3
2,080,445	+		MPMX19_01992	0.67	+0.1
2,080,445	+		MPMX19_01992	0.67	-1.9
2,080,445	+		MPMX19_01992	0.67	+0.4
2,080,445	+		MPMX19_01992	0.67	+0.1
2,080,445	+		MPMX19_01992	0.67	-0.8
2,080,445	+		MPMX19_01992	0.67	-0.3
2,080,445	+		MPMX19_01992	0.67	-0.7
2,080,445	+		MPMX19_01992	0.67	-0.4
2,080,445	+		MPMX19_01992	0.67	-0.1
2,080,445	+		MPMX19_01992	0.67	-1.2
2,080,445	+		MPMX19_01992	0.67	-2.1
2,080,445	+		MPMX19_01992	0.67	-2.1
2,080,445	+		MPMX19_01992	0.67	-0.2
2,080,445	+		MPMX19_01992	0.67	-1.5
2,080,445	+		MPMX19_01992	0.67	+0.2
2,080,445	+		MPMX19_01992	0.67	+0.4
2,080,446	-		MPMX19_01992	0.67	-0.3
2,080,446	-		MPMX19_01992	0.67	-0.6
2,080,446	-		MPMX19_01992	0.67	-1.8
2,080,446	-		MPMX19_01992	0.67	-0.9
2,080,446	-		MPMX19_01992	0.67	+0.1
2,080,446	-		MPMX19_01992	0.67	-0.6
2,080,446	-		MPMX19_01992	0.67	-0.9
2,080,446	-		MPMX19_01992	0.67	-0.9
2,080,446	-		MPMX19_01992	0.67	+1.6
2,080,446	-		MPMX19_01992	0.67	+0.6
2,080,446	-		MPMX19_01992	0.67	+1.0
2,080,446	-		MPMX19_01992	0.67	-0.4
2,080,446	-		MPMX19_01992	0.67	-2.3
2,080,446	-		MPMX19_01992	0.67	-0.1
2,080,446	-		MPMX19_01992	0.67	-0.9
2,080,446	-		MPMX19_01992	0.67	-0.6
2,080,446	-		MPMX19_01992	0.67	+0.3
2,080,446	-		MPMX19_01992	0.67	-0.7
2,080,446	-		MPMX19_01992	0.67	-0.5
2,080,517	+		MPMX19_01992	0.72	+1.5
2,080,517	+		MPMX19_01992	0.72	-1.4
2,080,517	+		MPMX19_01992	0.72	+0.2
2,080,517	+		MPMX19_01992	0.72	-1.8
2,080,517	+		MPMX19_01992	0.72	+0.4
2,080,517	+		MPMX19_01992	0.72	-1.2
2,080,517	+		MPMX19_01992	0.72	-0.1
2,080,517	+		MPMX19_01992	0.72	-1.2
2,080,518	-		MPMX19_01992	0.72	+0.2
2,080,518	-		MPMX19_01992	0.72	-1.0
2,080,518	-		MPMX19_01992	0.72	-0.0
2,080,518	-		MPMX19_01992	0.72	+0.9
2,080,518	-		MPMX19_01992	0.72	-1.2
2,080,737	+		MPMX19_01992	0.90	-1.4
2,080,737	+		MPMX19_01992	0.90	-0.7
2,080,737	+		MPMX19_01992	0.90	+0.1
2,080,738	-		MPMX19_01992	0.90	-0.9
2,080,739	+		MPMX19_01992	0.90	-2.3
2,080,739	+		MPMX19_01992	0.90	-1.5
2,080,739	+		MPMX19_01992	0.90	-0.9
2,080,739	+		MPMX19_01992	0.90	+1.9
2,080,739	+		MPMX19_01992	0.90	+0.1
2,080,739	+		MPMX19_01992	0.90	+1.2
2,080,739	+		MPMX19_01992	0.90	+0.6
2,080,739	+		MPMX19_01992	0.90	-0.9
2,080,739	+		MPMX19_01992	0.90	-1.4
2,080,739	+		MPMX19_01992	0.90	-2.1
2,080,739	+		MPMX19_01992	0.90	+0.2
2,080,739	+		MPMX19_01992	0.90	-0.2
2,080,739	+		MPMX19_01992	0.90	-1.2
2,080,739	+		MPMX19_01992	0.90	-0.9
2,080,739	+		MPMX19_01992	0.90	-2.8
2,080,739	+		MPMX19_01992	0.90	-1.1
2,080,739	+		MPMX19_01992	0.90	-0.2
2,080,739	+		MPMX19_01992	0.90	+0.1
2,080,739	+		MPMX19_01992	0.90	+0.6
2,080,739	+		MPMX19_01992	0.90	+0.5
2,080,739	+		MPMX19_01992	0.90	+0.5
2,080,739	+		MPMX19_01992	0.90	+0.5
2,080,739	+		MPMX19_01992	0.90	-0.4
2,080,739	+		MPMX19_01992	0.90	-0.7
2,080,739	+		MPMX19_01992	0.90	-1.4
2,080,739	+		MPMX19_01992	0.90	+0.8
2,080,739	+		MPMX19_01992	0.90	-1.2
2,080,740	-		MPMX19_01992	0.90	-0.7
2,080,740	-		MPMX19_01992	0.90	+0.3
2,080,740	-		MPMX19_01992	0.90	+0.5
2,080,740	-		MPMX19_01992	0.90	+0.2
2,080,740	-		MPMX19_01992	0.90	-1.2
2,080,740	-		MPMX19_01992	0.90	+1.6
2,080,740	-		MPMX19_01992	0.90	+0.2
2,080,740	-		MPMX19_01992	0.90	-0.2
2,080,740	-		MPMX19_01992	0.90	-1.5
2,080,740	-		MPMX19_01992	0.90	+0.9
2,080,740	-		MPMX19_01992	0.90	-1.8
2,080,740	-		MPMX19_01992	0.90	+0.6
2,080,740	-		MPMX19_01992	0.90	+0.4
2,080,740	-		MPMX19_01992	0.90	+0.1
2,080,740	-		MPMX19_01992	0.90	-0.1
2,080,740	-		MPMX19_01992	0.90	-0.3
2,080,740	-		MPMX19_01992	0.90	+0.5
2,080,740	-		MPMX19_01992	0.90	-2.1
2,080,923	+				-0.8
2,080,923	+				+1.2
2,080,924	-				+0.2
2,080,924	-				-0.9
2,080,924	-				-0.9
2,081,076	+				-1.2
2,081,123	+				-0.1
2,081,169	-				-0.3
2,081,303	-				-1.6
2,081,330	+		MPMX19_01993	0.15	+0.6
2,081,330	+		MPMX19_01993	0.15	-0.9
2,081,330	+		MPMX19_01993	0.15	+0.1
2,081,330	+		MPMX19_01993	0.15	-1.2
2,081,330	+		MPMX19_01993	0.15	+0.2
2,081,330	+		MPMX19_01993	0.15	-0.4
2,081,331	-		MPMX19_01993	0.15	+1.4
2,081,331	-		MPMX19_01993	0.15	-1.5
2,081,331	-		MPMX19_01993	0.15	-1.1
2,081,331	-		MPMX19_01993	0.15	-0.4
2,081,540	+		MPMX19_01993	0.58	-1.1
2,081,540	+		MPMX19_01993	0.58	-0.1
2,081,540	+		MPMX19_01993	0.58	-0.5
2,081,540	+		MPMX19_01993	0.58	-1.2
2,081,540	+		MPMX19_01993	0.58	-0.4
2,081,540	+		MPMX19_01993	0.58	+0.4
2,081,540	+		MPMX19_01993	0.58	-1.2
2,081,540	+		MPMX19_01993	0.58	-1.3
2,081,541	-		MPMX19_01993	0.59	+0.5
2,081,541	-		MPMX19_01993	0.59	-1.2
2,081,541	-		MPMX19_01993	0.59	+0.6
2,081,576	+		MPMX19_01993	0.66	+0.1
2,081,577	-		MPMX19_01993	0.66	+1.3
2,081,577	-		MPMX19_01993	0.66	-0.4
2,081,577	-		MPMX19_01993	0.66	+0.2
2,081,597	+		MPMX19_01993	0.70	-2.1
2,081,597	+		MPMX19_01993	0.70	+1.6
2,081,597	+		MPMX19_01993	0.70	-0.3
2,081,597	+		MPMX19_01993	0.70	-1.2
2,081,597	+		MPMX19_01993	0.70	-1.2
2,081,598	-		MPMX19_01993	0.70	-0.9
2,081,598	-		MPMX19_01993	0.70	-0.5
2,081,598	-		MPMX19_01993	0.70	-0.4
2,081,598	-		MPMX19_01993	0.70	-0.5
2,081,598	-		MPMX19_01993	0.70	-2.2
2,081,705	+				-0.1
2,081,705	+				+0.1
2,081,705	+				-0.4
2,081,706	-				+0.1
2,081,706	-				+0.2
2,081,706	-				-0.4
2,081,706	-				-1.2
2,081,827	+		MPMX19_01994	0.15	-1.2
2,081,827	+		MPMX19_01994	0.15	-2.6
2,081,827	+		MPMX19_01994	0.15	+0.7
2,081,828	-		MPMX19_01994	0.15	-0.1
2,081,828	-		MPMX19_01994	0.15	-0.9
2,081,828	-		MPMX19_01994	0.15	-0.6
2,081,828	-		MPMX19_01994	0.15	-1.9
2,081,887	+		MPMX19_01994	0.28	-0.1
2,081,887	+		MPMX19_01994	0.28	+2.2
2,081,887	+		MPMX19_01994	0.28	+0.7
2,081,887	+		MPMX19_01994	0.28	+0.2
2,081,887	+		MPMX19_01994	0.28	-1.4
2,081,888	-		MPMX19_01994	0.28	-0.0
2,081,888	-		MPMX19_01994	0.28	-2.4
2,081,888	-		MPMX19_01994	0.28	+0.5
2,081,888	-		MPMX19_01994	0.28	-1.5
2,081,989	-		MPMX19_01994	0.49	+0.2
2,082,012	+		MPMX19_01994	0.54	-0.7
2,082,012	+		MPMX19_01994	0.54	+0.4
2,082,012	+		MPMX19_01994	0.54	+0.9
2,082,012	+		MPMX19_01994	0.54	+0.5
2,082,012	+		MPMX19_01994	0.54	+0.6
2,082,012	+		MPMX19_01994	0.54	-0.1
2,082,012	+		MPMX19_01994	0.54	-1.4
2,082,013	-		MPMX19_01994	0.54	-0.4
2,082,013	-		MPMX19_01994	0.54	-1.9
2,082,013	-		MPMX19_01994	0.54	-0.4
2,082,013	-		MPMX19_01994	0.54	-0.1
2,082,094	+		MPMX19_01994	0.71	+0.6
2,082,094	+		MPMX19_01994	0.71	-0.2
2,082,094	+		MPMX19_01994	0.71	-0.7
2,082,094	+		MPMX19_01994	0.71	-0.8
2,082,094	+		MPMX19_01994	0.71	+0.2
2,082,094	+		MPMX19_01994	0.71	+1.3
2,082,094	+		MPMX19_01994	0.71	-1.9
2,082,094	+		MPMX19_01994	0.71	-1.4
2,082,094	+		MPMX19_01994	0.71	-3.4
2,082,094	+		MPMX19_01994	0.71	-2.1
2,082,094	+		MPMX19_01994	0.71	-1.2
2,082,094	+		MPMX19_01994	0.71	-0.9
2,082,094	+		MPMX19_01994	0.71	-0.6
2,082,094	+		MPMX19_01994	0.71	+0.1
2,082,095	-		MPMX19_01994	0.71	-1.0
2,082,095	-		MPMX19_01994	0.71	+0.8
2,082,095	-		MPMX19_01994	0.71	-0.9
2,082,095	-		MPMX19_01994	0.71	+1.8
2,082,095	-		MPMX19_01994	0.71	-0.6
2,082,095	-		MPMX19_01994	0.71	-0.7
2,082,095	-		MPMX19_01994	0.71	-0.4
2,082,095	-		MPMX19_01994	0.71	+0.4
2,082,095	-		MPMX19_01994	0.71	-0.3
2,082,151	+		MPMX19_01994	0.82	-0.5
2,082,151	+		MPMX19_01994	0.82	-2.1
2,082,151	+		MPMX19_01994	0.82	+0.8
2,082,151	+		MPMX19_01994	0.82	-0.2
2,082,151	+		MPMX19_01994	0.82	+0.5
2,082,151	+		MPMX19_01994	0.82	+0.8
2,082,152	-		MPMX19_01994	0.83	+1.5
2,082,152	-		MPMX19_01994	0.83	+0.2
2,082,199	+				-2.4
2,082,199	+				+0.4
2,082,199	+				+0.4
2,082,199	+				-0.8
2,082,199	+				-0.6
2,082,199	+				+0.6
2,082,199	+				-1.4
2,082,199	+				-0.5
2,082,199	+				+0.9
2,082,199	+				-0.9
2,082,199	+				-0.9
2,082,199	+				+0.3
2,082,199	+				+0.2
2,082,199	+				-0.4
2,082,199	+				+0.8
2,082,199	+				+1.3
2,082,199	+				-0.5
2,082,199	+				-1.7
2,082,199	+				+2.0
2,082,199	+				-0.9
2,082,199	+				-0.9
2,082,199	+				-1.4
2,082,200	-				-0.4
2,082,200	-				+0.1
2,082,200	-				-0.8
2,082,200	-				-0.4
2,082,200	-				+0.1
2,082,200	-				-1.4
2,082,200	-				-0.4
2,082,200	-				-0.2
2,082,200	-				-0.5
2,082,200	-				-0.4
2,082,200	-				+0.4
2,082,200	-				+0.6
2,082,200	-				+0.2
2,082,200	-				-1.2
2,082,200	-				-0.3
2,082,200	-				+0.6
2,082,200	-				-0.9
2,082,200	-				-0.4
2,082,391	+		MPMX19_01995	0.16	+1.4
2,082,391	+		MPMX19_01995	0.16	-0.2
2,082,391	+		MPMX19_01995	0.16	-0.4
2,082,391	+		MPMX19_01995	0.16	-0.6
2,082,392	-		MPMX19_01995	0.17	-0.6
2,082,392	-		MPMX19_01995	0.17	+0.6
2,082,392	-		MPMX19_01995	0.17	+0.2
2,082,392	-		MPMX19_01995	0.17	-1.0