Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01907

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01906 and MPMX19_01907 are separated by 58 nucleotidesMPMX19_01907 and MPMX19_01908 are separated by 45 nucleotidesMPMX19_01908 and MPMX19_01909 overlap by 4 nucleotidesMPMX19_01909 and MPMX19_01910 are separated by 42 nucleotides MPMX19_01906: MPMX19_01906 - Chaperedoxin, at 1,991,551 to 1,992,516 _01906 MPMX19_01907: MPMX19_01907 - hypothetical protein, at 1,992,575 to 1,993,243 _01907 MPMX19_01908: MPMX19_01908 - hypothetical protein, at 1,993,289 to 1,993,519 _01908 MPMX19_01909: MPMX19_01909 - hypothetical protein, at 1,993,516 to 1,993,914 _01909 MPMX19_01910: MPMX19_01910 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 1,993,957 to 1,995,471 _01910 Position (kb) 1992 1993 1994Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1991.863 kb on + strand, within MPMX19_01906at 1991.863 kb on + strand, within MPMX19_01906at 1991.863 kb on + strand, within MPMX19_01906at 1991.863 kb on + strand, within MPMX19_01906at 1991.863 kb on + strand, within MPMX19_01906at 1991.863 kb on + strand, within MPMX19_01906at 1991.863 kb on + strand, within MPMX19_01906at 1991.863 kb on + strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1991.864 kb on - strand, within MPMX19_01906at 1992.064 kb on + strand, within MPMX19_01906at 1992.064 kb on + strand, within MPMX19_01906at 1992.064 kb on + strand, within MPMX19_01906at 1992.064 kb on + strand, within MPMX19_01906at 1992.064 kb on + strand, within MPMX19_01906at 1992.064 kb on + strand, within MPMX19_01906at 1992.064 kb on + strand, within MPMX19_01906at 1992.064 kb on + strand, within MPMX19_01906at 1992.065 kb on - strand, within MPMX19_01906at 1992.065 kb on - strand, within MPMX19_01906at 1992.065 kb on - strand, within MPMX19_01906at 1992.065 kb on - strand, within MPMX19_01906at 1992.065 kb on - strand, within MPMX19_01906at 1992.106 kb on + strand, within MPMX19_01906at 1992.106 kb on + strand, within MPMX19_01906at 1992.106 kb on + strand, within MPMX19_01906at 1992.106 kb on + strand, within MPMX19_01906at 1992.106 kb on + strand, within MPMX19_01906at 1992.107 kb on - strand, within MPMX19_01906at 1992.107 kb on - strand, within MPMX19_01906at 1992.107 kb on - strand, within MPMX19_01906at 1992.107 kb on - strand, within MPMX19_01906at 1992.107 kb on - strand, within MPMX19_01906at 1992.107 kb on - strand, within MPMX19_01906at 1992.107 kb on - strand, within MPMX19_01906at 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.563 kb on + strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.564 kb on - strandat 1992.698 kb on + strand, within MPMX19_01907at 1992.698 kb on + strand, within MPMX19_01907at 1992.699 kb on - strand, within MPMX19_01907at 1992.699 kb on - strand, within MPMX19_01907at 1992.736 kb on + strand, within MPMX19_01907at 1992.736 kb on + strand, within MPMX19_01907at 1992.736 kb on + strand, within MPMX19_01907at 1992.737 kb on - strand, within MPMX19_01907at 1992.737 kb on - strand, within MPMX19_01907at 1992.737 kb on - strand, within MPMX19_01907at 1992.794 kb on + strand, within MPMX19_01907at 1992.794 kb on + strand, within MPMX19_01907at 1992.794 kb on + strand, within MPMX19_01907at 1992.794 kb on + strand, within MPMX19_01907at 1992.794 kb on + strand, within MPMX19_01907at 1992.794 kb on + strand, within MPMX19_01907at 1992.794 kb on + strand, within MPMX19_01907at 1992.794 kb on + strand, within MPMX19_01907at 1992.795 kb on - strand, within MPMX19_01907at 1992.795 kb on - strand, within MPMX19_01907at 1992.795 kb on - strand, within MPMX19_01907at 1992.795 kb on - strand, within MPMX19_01907at 1992.918 kb on - strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.019 kb on + strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.020 kb on - strand, within MPMX19_01907at 1993.245 kb on + strandat 1993.245 kb on + strandat 1993.245 kb on + strandat 1993.636 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.762 kb on + strand, within MPMX19_01909at 1993.763 kb on - strand, within MPMX19_01909at 1993.763 kb on - strand, within MPMX19_01909at 1993.763 kb on - strand, within MPMX19_01909at 1993.763 kb on - strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.819 kb on + strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.820 kb on - strand, within MPMX19_01909at 1993.825 kb on + strand, within MPMX19_01909at 1993.825 kb on + strand, within MPMX19_01909at 1993.826 kb on - strand, within MPMX19_01909at 1993.826 kb on - strand, within MPMX19_01909at 1993.826 kb on - strand, within MPMX19_01909at 1993.826 kb on - strand, within MPMX19_01909at 1993.864 kb on + strand, within MPMX19_01909at 1993.864 kb on + strand, within MPMX19_01909at 1993.864 kb on + strand, within MPMX19_01909at 1993.864 kb on + strand, within MPMX19_01909at 1993.864 kb on + strand, within MPMX19_01909at 1993.864 kb on + strand, within MPMX19_01909at 1993.865 kb on - strand, within MPMX19_01909at 1993.865 kb on - strand, within MPMX19_01909at 1993.865 kb on - strand, within MPMX19_01909at 1993.893 kb on + strandat 1993.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,991,863 + MPMX19_01906 0.32 -0.7
1,991,863 + MPMX19_01906 0.32 -0.5
1,991,863 + MPMX19_01906 0.32 -0.6
1,991,863 + MPMX19_01906 0.32 -0.3
1,991,863 + MPMX19_01906 0.32 +0.2
1,991,863 + MPMX19_01906 0.32 +1.1
1,991,863 + MPMX19_01906 0.32 +1.2
1,991,863 + MPMX19_01906 0.32 -0.4
1,991,864 - MPMX19_01906 0.32 -1.2
1,991,864 - MPMX19_01906 0.32 +1.0
1,991,864 - MPMX19_01906 0.32 -0.4
1,991,864 - MPMX19_01906 0.32 -1.2
1,991,864 - MPMX19_01906 0.32 -0.1
1,991,864 - MPMX19_01906 0.32 -0.3
1,991,864 - MPMX19_01906 0.32 -0.5
1,991,864 - MPMX19_01906 0.32 -0.3
1,991,864 - MPMX19_01906 0.32 -1.1
1,991,864 - MPMX19_01906 0.32 +0.2
1,991,864 - MPMX19_01906 0.32 -0.8
1,991,864 - MPMX19_01906 0.32 -1.3
1,991,864 - MPMX19_01906 0.32 -0.6
1,992,064 + MPMX19_01906 0.53 -0.4
1,992,064 + MPMX19_01906 0.53 -1.7
1,992,064 + MPMX19_01906 0.53 -2.0
1,992,064 + MPMX19_01906 0.53 -0.5
1,992,064 + MPMX19_01906 0.53 +0.4
1,992,064 + MPMX19_01906 0.53 +0.7
1,992,064 + MPMX19_01906 0.53 -0.2
1,992,064 + MPMX19_01906 0.53 -2.0
1,992,065 - MPMX19_01906 0.53 +1.2
1,992,065 - MPMX19_01906 0.53 +1.2
1,992,065 - MPMX19_01906 0.53 +0.6
1,992,065 - MPMX19_01906 0.53 -1.0
1,992,065 - MPMX19_01906 0.53 +0.6
1,992,106 + MPMX19_01906 0.57 -1.7
1,992,106 + MPMX19_01906 0.57 -0.8
1,992,106 + MPMX19_01906 0.57 +2.0
1,992,106 + MPMX19_01906 0.57 -0.1
1,992,106 + MPMX19_01906 0.57 +0.9
1,992,107 - MPMX19_01906 0.58 -2.9
1,992,107 - MPMX19_01906 0.58 +0.2
1,992,107 - MPMX19_01906 0.58 +0.3
1,992,107 - MPMX19_01906 0.58 -0.1
1,992,107 - MPMX19_01906 0.58 +1.1
1,992,107 - MPMX19_01906 0.58 -1.4
1,992,107 - MPMX19_01906 0.58 +0.6
1,992,563 + -1.1
1,992,563 + +1.0
1,992,563 + -0.4
1,992,563 + -0.7
1,992,563 + -0.4
1,992,563 + -0.8
1,992,563 + -0.7
1,992,563 + +0.1
1,992,563 + -1.0
1,992,563 + +0.2
1,992,563 + -0.0
1,992,563 + +0.5
1,992,563 + -1.5
1,992,563 + -0.4
1,992,563 + +2.6
1,992,563 + -0.2
1,992,564 - +0.0
1,992,564 - -0.5
1,992,564 - -1.2
1,992,564 - -0.3
1,992,564 - -0.4
1,992,564 - -0.2
1,992,564 - +0.0
1,992,564 - -2.1
1,992,564 - +0.0
1,992,564 - -1.4
1,992,564 - +0.0
1,992,564 - -1.5
1,992,564 - +1.2
1,992,564 - -1.0
1,992,698 + MPMX19_01907 0.18 +0.3
1,992,698 + MPMX19_01907 0.18 -1.6
1,992,699 - MPMX19_01907 0.19 -0.2
1,992,699 - MPMX19_01907 0.19 +1.0
1,992,736 + MPMX19_01907 0.24 +0.2
1,992,736 + MPMX19_01907 0.24 -2.1
1,992,736 + MPMX19_01907 0.24 +0.1
1,992,737 - MPMX19_01907 0.24 -0.7
1,992,737 - MPMX19_01907 0.24 +0.8
1,992,737 - MPMX19_01907 0.24 -0.4
1,992,794 + MPMX19_01907 0.33 -1.7
1,992,794 + MPMX19_01907 0.33 +0.5
1,992,794 + MPMX19_01907 0.33 -0.3
1,992,794 + MPMX19_01907 0.33 +0.4
1,992,794 + MPMX19_01907 0.33 -0.3
1,992,794 + MPMX19_01907 0.33 -0.2
1,992,794 + MPMX19_01907 0.33 -1.5
1,992,794 + MPMX19_01907 0.33 +0.0
1,992,795 - MPMX19_01907 0.33 +0.2
1,992,795 - MPMX19_01907 0.33 +0.2
1,992,795 - MPMX19_01907 0.33 +0.6
1,992,795 - MPMX19_01907 0.33 -0.2
1,992,918 - MPMX19_01907 0.51 +0.8
1,993,019 + MPMX19_01907 0.66 +0.4
1,993,019 + MPMX19_01907 0.66 -1.3
1,993,019 + MPMX19_01907 0.66 +0.0
1,993,019 + MPMX19_01907 0.66 -0.3
1,993,019 + MPMX19_01907 0.66 +0.6
1,993,019 + MPMX19_01907 0.66 +0.5
1,993,019 + MPMX19_01907 0.66 -0.5
1,993,019 + MPMX19_01907 0.66 -1.7
1,993,019 + MPMX19_01907 0.66 -1.0
1,993,019 + MPMX19_01907 0.66 -0.7
1,993,019 + MPMX19_01907 0.66 +0.4
1,993,019 + MPMX19_01907 0.66 -0.1
1,993,020 - MPMX19_01907 0.67 -0.1
1,993,020 - MPMX19_01907 0.67 +0.6
1,993,020 - MPMX19_01907 0.67 +0.1
1,993,020 - MPMX19_01907 0.67 +0.3
1,993,020 - MPMX19_01907 0.67 -1.8
1,993,020 - MPMX19_01907 0.67 +0.1
1,993,020 - MPMX19_01907 0.67 -1.0
1,993,020 - MPMX19_01907 0.67 +1.0
1,993,020 - MPMX19_01907 0.67 +0.0
1,993,020 - MPMX19_01907 0.67 -0.7
1,993,020 - MPMX19_01907 0.67 -2.1
1,993,245 + +0.5
1,993,245 + -2.1
1,993,245 + +0.0
1,993,636 + MPMX19_01909 0.30 -0.4
1,993,762 + MPMX19_01909 0.62 -0.4
1,993,762 + MPMX19_01909 0.62 -0.2
1,993,762 + MPMX19_01909 0.62 -2.7
1,993,762 + MPMX19_01909 0.62 -1.0
1,993,762 + MPMX19_01909 0.62 +0.5
1,993,762 + MPMX19_01909 0.62 -1.0
1,993,762 + MPMX19_01909 0.62 -0.7
1,993,762 + MPMX19_01909 0.62 +0.0
1,993,762 + MPMX19_01909 0.62 +0.8
1,993,762 + MPMX19_01909 0.62 -0.5
1,993,762 + MPMX19_01909 0.62 -1.0
1,993,762 + MPMX19_01909 0.62 -1.6
1,993,762 + MPMX19_01909 0.62 -2.8
1,993,762 + MPMX19_01909 0.62 -0.5
1,993,762 + MPMX19_01909 0.62 +0.4
1,993,763 - MPMX19_01909 0.62 -1.0
1,993,763 - MPMX19_01909 0.62 -0.2
1,993,763 - MPMX19_01909 0.62 +1.1
1,993,763 - MPMX19_01909 0.62 -0.3
1,993,819 + MPMX19_01909 0.76 +0.2
1,993,819 + MPMX19_01909 0.76 -0.4
1,993,819 + MPMX19_01909 0.76 +0.2
1,993,819 + MPMX19_01909 0.76 -0.4
1,993,819 + MPMX19_01909 0.76 +0.6
1,993,819 + MPMX19_01909 0.76 -0.1
1,993,819 + MPMX19_01909 0.76 -0.6
1,993,819 + MPMX19_01909 0.76 +0.3
1,993,819 + MPMX19_01909 0.76 -0.3
1,993,819 + MPMX19_01909 0.76 -1.8
1,993,819 + MPMX19_01909 0.76 -2.1
1,993,819 + MPMX19_01909 0.76 +0.3
1,993,820 - MPMX19_01909 0.76 +0.0
1,993,820 - MPMX19_01909 0.76 +0.5
1,993,820 - MPMX19_01909 0.76 -1.8
1,993,820 - MPMX19_01909 0.76 +1.0
1,993,820 - MPMX19_01909 0.76 -0.6
1,993,820 - MPMX19_01909 0.76 +1.6
1,993,820 - MPMX19_01909 0.76 -1.4
1,993,820 - MPMX19_01909 0.76 +0.5
1,993,820 - MPMX19_01909 0.76 -1.1
1,993,820 - MPMX19_01909 0.76 -1.0
1,993,820 - MPMX19_01909 0.76 +0.3
1,993,820 - MPMX19_01909 0.76 -0.6
1,993,820 - MPMX19_01909 0.76 +0.6
1,993,820 - MPMX19_01909 0.76 -0.9
1,993,825 + MPMX19_01909 0.77 +1.6
1,993,825 + MPMX19_01909 0.77 +0.7
1,993,826 - MPMX19_01909 0.78 +2.9
1,993,826 - MPMX19_01909 0.78 -0.4
1,993,826 - MPMX19_01909 0.78 -2.1
1,993,826 - MPMX19_01909 0.78 +1.1
1,993,864 + MPMX19_01909 0.87 -0.7
1,993,864 + MPMX19_01909 0.87 -1.2
1,993,864 + MPMX19_01909 0.87 +0.1
1,993,864 + MPMX19_01909 0.87 -0.2
1,993,864 + MPMX19_01909 0.87 +1.0
1,993,864 + MPMX19_01909 0.87 -0.5
1,993,865 - MPMX19_01909 0.87 +0.0
1,993,865 - MPMX19_01909 0.87 -1.0
1,993,865 - MPMX19_01909 0.87 +1.6
1,993,893 + -1.4
1,993,893 + +0.5

Or see this region's nucleotide sequence