Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01866

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01865 and MPMX19_01866 are separated by 13 nucleotidesMPMX19_01866 and MPMX19_01867 overlap by 4 nucleotides MPMX19_01865: MPMX19_01865 - Thiosulfate sulfurtransferase GlpE, at 1,945,705 to 1,946,862 _01865 MPMX19_01866: MPMX19_01866 - Sulfur carrier protein CysO, at 1,946,876 to 1,947,160 _01866 MPMX19_01867: MPMX19_01867 - hypothetical protein, at 1,947,157 to 1,948,578 _01867 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -2 -1 0 1 2at 1945.952 kb on + strand, within MPMX19_01865at 1945.952 kb on + strand, within MPMX19_01865at 1945.952 kb on + strand, within MPMX19_01865at 1945.952 kb on + strand, within MPMX19_01865at 1945.953 kb on - strand, within MPMX19_01865at 1945.953 kb on - strand, within MPMX19_01865at 1945.953 kb on - strand, within MPMX19_01865at 1945.953 kb on - strand, within MPMX19_01865at 1945.953 kb on - strand, within MPMX19_01865at 1945.953 kb on - strand, within MPMX19_01865at 1945.953 kb on - strand, within MPMX19_01865at 1945.953 kb on - strand, within MPMX19_01865at 1945.956 kb on - strand, within MPMX19_01865at 1945.988 kb on + strand, within MPMX19_01865at 1946.060 kb on + strand, within MPMX19_01865at 1946.060 kb on + strand, within MPMX19_01865at 1946.060 kb on + strand, within MPMX19_01865at 1946.060 kb on + strand, within MPMX19_01865at 1946.060 kb on + strand, within MPMX19_01865at 1946.060 kb on + strand, within MPMX19_01865at 1946.060 kb on + strand, within MPMX19_01865at 1946.061 kb on - strand, within MPMX19_01865at 1946.061 kb on - strand, within MPMX19_01865at 1946.061 kb on - strand, within MPMX19_01865at 1946.105 kb on + strand, within MPMX19_01865at 1946.105 kb on + strand, within MPMX19_01865at 1946.105 kb on + strand, within MPMX19_01865at 1946.106 kb on - strand, within MPMX19_01865at 1946.106 kb on - strand, within MPMX19_01865at 1946.106 kb on - strand, within MPMX19_01865at 1946.106 kb on - strand, within MPMX19_01865at 1946.106 kb on - strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.366 kb on + strand, within MPMX19_01865at 1946.367 kb on - strand, within MPMX19_01865at 1946.367 kb on - strand, within MPMX19_01865at 1946.367 kb on - strand, within MPMX19_01865at 1946.367 kb on - strand, within MPMX19_01865at 1946.367 kb on - strand, within MPMX19_01865at 1946.367 kb on - strand, within MPMX19_01865at 1946.367 kb on - strand, within MPMX19_01865at 1946.367 kb on - strand, within MPMX19_01865at 1946.478 kb on - strand, within MPMX19_01865at 1946.644 kb on + strand, within MPMX19_01865at 1946.644 kb on + strand, within MPMX19_01865at 1946.644 kb on + strand, within MPMX19_01865at 1946.645 kb on - strand, within MPMX19_01865at 1946.645 kb on - strand, within MPMX19_01865at 1946.645 kb on - strand, within MPMX19_01865at 1946.645 kb on - strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.689 kb on + strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.690 kb on - strand, within MPMX19_01865at 1946.973 kb on + strand, within MPMX19_01866at 1946.973 kb on + strand, within MPMX19_01866at 1946.973 kb on + strand, within MPMX19_01866at 1946.973 kb on + strand, within MPMX19_01866at 1946.973 kb on + strand, within MPMX19_01866at 1946.973 kb on + strand, within MPMX19_01866at 1946.974 kb on - strand, within MPMX19_01866at 1946.974 kb on - strand, within MPMX19_01866at 1946.974 kb on - strand, within MPMX19_01866at 1946.974 kb on - strand, within MPMX19_01866at 1946.974 kb on - strand, within MPMX19_01866at 1946.974 kb on - strand, within MPMX19_01866at 1946.974 kb on - strand, within MPMX19_01866at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.320 kb on + strand, within MPMX19_01867at 1947.321 kb on - strand, within MPMX19_01867at 1947.321 kb on - strand, within MPMX19_01867at 1947.321 kb on - strand, within MPMX19_01867at 1947.321 kb on - strand, within MPMX19_01867at 1947.321 kb on - strand, within MPMX19_01867at 1947.321 kb on - strand, within MPMX19_01867at 1947.326 kb on + strand, within MPMX19_01867at 1947.326 kb on + strand, within MPMX19_01867at 1947.326 kb on + strand, within MPMX19_01867at 1947.326 kb on + strand, within MPMX19_01867at 1947.326 kb on + strand, within MPMX19_01867at 1947.327 kb on - strand, within MPMX19_01867at 1947.327 kb on - strand, within MPMX19_01867at 1947.327 kb on - strand, within MPMX19_01867at 1947.327 kb on - strand, within MPMX19_01867at 1947.327 kb on - strand, within MPMX19_01867at 1947.327 kb on - strand, within MPMX19_01867at 1947.327 kb on - strand, within MPMX19_01867at 1947.485 kb on + strand, within MPMX19_01867at 1947.485 kb on + strand, within MPMX19_01867at 1947.485 kb on + strand, within MPMX19_01867at 1947.486 kb on - strand, within MPMX19_01867at 1947.486 kb on - strand, within MPMX19_01867at 1947.486 kb on - strand, within MPMX19_01867at 1947.486 kb on - strand, within MPMX19_01867at 1947.878 kb on + strand, within MPMX19_01867at 1947.878 kb on + strand, within MPMX19_01867at 1947.879 kb on - strand, within MPMX19_01867at 1947.893 kb on + strand, within MPMX19_01867at 1947.893 kb on + strand, within MPMX19_01867at 1947.894 kb on - strand, within MPMX19_01867at 1947.894 kb on - strand, within MPMX19_01867at 1947.894 kb on - strand, within MPMX19_01867at 1947.894 kb on - strand, within MPMX19_01867at 1947.958 kb on + strand, within MPMX19_01867at 1947.958 kb on + strand, within MPMX19_01867at 1947.958 kb on + strand, within MPMX19_01867at 1947.958 kb on + strand, within MPMX19_01867at 1947.958 kb on + strand, within MPMX19_01867at 1947.958 kb on + strand, within MPMX19_01867at 1947.959 kb on - strand, within MPMX19_01867at 1947.959 kb on - strand, within MPMX19_01867at 1947.959 kb on - strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.088 kb on + strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867at 1948.089 kb on - strand, within MPMX19_01867

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,945,952 + MPMX19_01865 0.21 -1.3
1,945,952 + MPMX19_01865 0.21 -0.6
1,945,952 + MPMX19_01865 0.21 -1.5
1,945,952 + MPMX19_01865 0.21 +0.3
1,945,953 - MPMX19_01865 0.21 +0.4
1,945,953 - MPMX19_01865 0.21 +1.3
1,945,953 - MPMX19_01865 0.21 -1.3
1,945,953 - MPMX19_01865 0.21 -0.2
1,945,953 - MPMX19_01865 0.21 -0.2
1,945,953 - MPMX19_01865 0.21 -0.1
1,945,953 - MPMX19_01865 0.21 -0.7
1,945,953 - MPMX19_01865 0.21 -1.5
1,945,956 - MPMX19_01865 0.22 -0.6
1,945,988 + MPMX19_01865 0.24 +1.3
1,946,060 + MPMX19_01865 0.31 -1.2
1,946,060 + MPMX19_01865 0.31 -0.4
1,946,060 + MPMX19_01865 0.31 -1.0
1,946,060 + MPMX19_01865 0.31 +1.0
1,946,060 + MPMX19_01865 0.31 -1.1
1,946,060 + MPMX19_01865 0.31 -1.5
1,946,060 + MPMX19_01865 0.31 -0.8
1,946,061 - MPMX19_01865 0.31 +0.6
1,946,061 - MPMX19_01865 0.31 -0.1
1,946,061 - MPMX19_01865 0.31 -1.5
1,946,105 + MPMX19_01865 0.35 -1.5
1,946,105 + MPMX19_01865 0.35 -0.4
1,946,105 + MPMX19_01865 0.35 -1.8
1,946,106 - MPMX19_01865 0.35 -0.3
1,946,106 - MPMX19_01865 0.35 -0.0
1,946,106 - MPMX19_01865 0.35 +1.4
1,946,106 - MPMX19_01865 0.35 -0.6
1,946,106 - MPMX19_01865 0.35 +0.3
1,946,366 + MPMX19_01865 0.57 -0.5
1,946,366 + MPMX19_01865 0.57 +0.3
1,946,366 + MPMX19_01865 0.57 -1.4
1,946,366 + MPMX19_01865 0.57 +0.5
1,946,366 + MPMX19_01865 0.57 -1.4
1,946,366 + MPMX19_01865 0.57 +1.0
1,946,366 + MPMX19_01865 0.57 -0.3
1,946,366 + MPMX19_01865 0.57 -1.5
1,946,366 + MPMX19_01865 0.57 +0.5
1,946,367 - MPMX19_01865 0.57 -0.5
1,946,367 - MPMX19_01865 0.57 -2.0
1,946,367 - MPMX19_01865 0.57 -0.9
1,946,367 - MPMX19_01865 0.57 -1.0
1,946,367 - MPMX19_01865 0.57 +1.1
1,946,367 - MPMX19_01865 0.57 -0.7
1,946,367 - MPMX19_01865 0.57 +0.6
1,946,367 - MPMX19_01865 0.57 -1.1
1,946,478 - MPMX19_01865 0.67 -0.5
1,946,644 + MPMX19_01865 0.81 -0.5
1,946,644 + MPMX19_01865 0.81 -0.2
1,946,644 + MPMX19_01865 0.81 -1.2
1,946,645 - MPMX19_01865 0.81 -0.1
1,946,645 - MPMX19_01865 0.81 -0.9
1,946,645 - MPMX19_01865 0.81 -1.0
1,946,645 - MPMX19_01865 0.81 -0.2
1,946,689 + MPMX19_01865 0.85 -0.8
1,946,689 + MPMX19_01865 0.85 -0.8
1,946,689 + MPMX19_01865 0.85 -0.1
1,946,689 + MPMX19_01865 0.85 -0.2
1,946,689 + MPMX19_01865 0.85 +0.4
1,946,689 + MPMX19_01865 0.85 +0.1
1,946,689 + MPMX19_01865 0.85 +0.2
1,946,689 + MPMX19_01865 0.85 +0.1
1,946,689 + MPMX19_01865 0.85 -0.3
1,946,690 - MPMX19_01865 0.85 +0.1
1,946,690 - MPMX19_01865 0.85 +0.1
1,946,690 - MPMX19_01865 0.85 -0.9
1,946,690 - MPMX19_01865 0.85 +0.1
1,946,690 - MPMX19_01865 0.85 -0.4
1,946,690 - MPMX19_01865 0.85 +1.1
1,946,690 - MPMX19_01865 0.85 -0.4
1,946,690 - MPMX19_01865 0.85 +0.5
1,946,690 - MPMX19_01865 0.85 -0.1
1,946,973 + MPMX19_01866 0.34 -1.4
1,946,973 + MPMX19_01866 0.34 -0.1
1,946,973 + MPMX19_01866 0.34 -0.4
1,946,973 + MPMX19_01866 0.34 +0.4
1,946,973 + MPMX19_01866 0.34 -0.4
1,946,973 + MPMX19_01866 0.34 +0.4
1,946,974 - MPMX19_01866 0.34 +0.2
1,946,974 - MPMX19_01866 0.34 -0.0
1,946,974 - MPMX19_01866 0.34 +0.3
1,946,974 - MPMX19_01866 0.34 -1.0
1,946,974 - MPMX19_01866 0.34 +0.5
1,946,974 - MPMX19_01866 0.34 -1.0
1,946,974 - MPMX19_01866 0.34 -1.8
1,947,320 + MPMX19_01867 0.11 +0.9
1,947,320 + MPMX19_01867 0.11 -1.5
1,947,320 + MPMX19_01867 0.11 -0.9
1,947,320 + MPMX19_01867 0.11 -0.7
1,947,320 + MPMX19_01867 0.11 +0.6
1,947,320 + MPMX19_01867 0.11 -0.7
1,947,320 + MPMX19_01867 0.11 -0.9
1,947,320 + MPMX19_01867 0.11 -0.5
1,947,320 + MPMX19_01867 0.11 +0.1
1,947,320 + MPMX19_01867 0.11 +0.1
1,947,320 + MPMX19_01867 0.11 +1.1
1,947,321 - MPMX19_01867 0.12 -1.0
1,947,321 - MPMX19_01867 0.12 +0.6
1,947,321 - MPMX19_01867 0.12 -0.3
1,947,321 - MPMX19_01867 0.12 -1.1
1,947,321 - MPMX19_01867 0.12 +0.6
1,947,321 - MPMX19_01867 0.12 -0.7
1,947,326 + MPMX19_01867 0.12 +1.3
1,947,326 + MPMX19_01867 0.12 +0.5
1,947,326 + MPMX19_01867 0.12 -0.6
1,947,326 + MPMX19_01867 0.12 +0.4
1,947,326 + MPMX19_01867 0.12 +0.1
1,947,327 - MPMX19_01867 0.12 -1.7
1,947,327 - MPMX19_01867 0.12 -0.1
1,947,327 - MPMX19_01867 0.12 +1.1
1,947,327 - MPMX19_01867 0.12 -0.3
1,947,327 - MPMX19_01867 0.12 -0.8
1,947,327 - MPMX19_01867 0.12 +0.4
1,947,327 - MPMX19_01867 0.12 -1.1
1,947,485 + MPMX19_01867 0.23 -1.5
1,947,485 + MPMX19_01867 0.23 -0.3
1,947,485 + MPMX19_01867 0.23 +0.4
1,947,486 - MPMX19_01867 0.23 -0.9
1,947,486 - MPMX19_01867 0.23 -1.2
1,947,486 - MPMX19_01867 0.23 -1.2
1,947,486 - MPMX19_01867 0.23 -0.4
1,947,878 + MPMX19_01867 0.51 +0.7
1,947,878 + MPMX19_01867 0.51 +0.9
1,947,879 - MPMX19_01867 0.51 -1.7
1,947,893 + MPMX19_01867 0.52 -0.4
1,947,893 + MPMX19_01867 0.52 -0.1
1,947,894 - MPMX19_01867 0.52 +0.5
1,947,894 - MPMX19_01867 0.52 +0.4
1,947,894 - MPMX19_01867 0.52 +0.2
1,947,894 - MPMX19_01867 0.52 +0.2
1,947,958 + MPMX19_01867 0.56 +0.3
1,947,958 + MPMX19_01867 0.56 -0.1
1,947,958 + MPMX19_01867 0.56 -0.6
1,947,958 + MPMX19_01867 0.56 +1.9
1,947,958 + MPMX19_01867 0.56 -0.6
1,947,958 + MPMX19_01867 0.56 -0.6
1,947,959 - MPMX19_01867 0.56 +0.2
1,947,959 - MPMX19_01867 0.56 +1.0
1,947,959 - MPMX19_01867 0.56 -1.3
1,948,088 + MPMX19_01867 0.65 +0.5
1,948,088 + MPMX19_01867 0.65 -0.1
1,948,088 + MPMX19_01867 0.65 +0.4
1,948,088 + MPMX19_01867 0.65 +0.3
1,948,088 + MPMX19_01867 0.65 -2.3
1,948,088 + MPMX19_01867 0.65 -0.8
1,948,088 + MPMX19_01867 0.65 -0.9
1,948,088 + MPMX19_01867 0.65 -1.0
1,948,088 + MPMX19_01867 0.65 +0.6
1,948,088 + MPMX19_01867 0.65 -0.8
1,948,088 + MPMX19_01867 0.65 -0.7
1,948,088 + MPMX19_01867 0.65 +0.1
1,948,088 + MPMX19_01867 0.65 +0.5
1,948,088 + MPMX19_01867 0.65 -0.1
1,948,089 - MPMX19_01867 0.66 -1.4
1,948,089 - MPMX19_01867 0.66 +0.5
1,948,089 - MPMX19_01867 0.66 +0.1
1,948,089 - MPMX19_01867 0.66 -0.4
1,948,089 - MPMX19_01867 0.66 -1.4
1,948,089 - MPMX19_01867 0.66 -0.4
1,948,089 - MPMX19_01867 0.66 -0.2
1,948,089 - MPMX19_01867 0.66 -0.2
1,948,089 - MPMX19_01867 0.66 +0.3
1,948,089 - MPMX19_01867 0.66 +0.6
1,948,089 - MPMX19_01867 0.66 +0.2
1,948,089 - MPMX19_01867 0.66 -2.4
1,948,089 - MPMX19_01867 0.66 -1.5
1,948,089 - MPMX19_01867 0.66 -0.3
1,948,089 - MPMX19_01867 0.66 -0.9
1,948,089 - MPMX19_01867 0.66 -0.7
1,948,089 - MPMX19_01867 0.66 -0.6
1,948,089 - MPMX19_01867 0.66 -1.4

Or see this region's nucleotide sequence