Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01706 and MPMX19_01707 overlap by 4 nucleotides MPMX19_01707 and MPMX19_01708 are separated by 131 nucleotides MPMX19_01708 and MPMX19_01709 are separated by 19 nucleotides MPMX19_01709 and MPMX19_01710 are separated by 76 nucleotides
MPMX19_01706: MPMX19_01706 - hypothetical protein, at 1,799,821 to 1,800,747
_01706
MPMX19_01707: MPMX19_01707 - Phosphatidylserine decarboxylase proenzyme, at 1,800,744 to 1,801,442
_01707
MPMX19_01708: MPMX19_01708 - hypothetical protein, at 1,801,574 to 1,802,044
_01708
MPMX19_01709: MPMX19_01709 - hypothetical protein, at 1,802,064 to 1,802,504
_01709
MPMX19_01710: MPMX19_01710 - Purine-binding protein, at 1,802,581 to 1,803,684
_01710
Position (kb) 1801
1802
1803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1801.459 kb on - strand at 1801.459 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.519 kb on - strand at 1801.519 kb on - strand at 1801.652 kb on - strand, within MPMX19_01708 at 1801.652 kb on - strand, within MPMX19_01708 at 1801.820 kb on + strand, within MPMX19_01708 at 1801.820 kb on + strand, within MPMX19_01708 at 1801.820 kb on + strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.043 kb on - strand at 1802.343 kb on + strand, within MPMX19_01709 at 1802.470 kb on + strand at 1802.470 kb on + strand at 1802.470 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.615 kb on + strand at 1802.615 kb on + strand at 1802.615 kb on + strand at 1802.615 kb on + strand at 1802.615 kb on + strand at 1802.616 kb on - strand at 1802.616 kb on - strand at 1802.616 kb on - strand at 1802.616 kb on - strand at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.882 kb on + strand, within MPMX19_01710 at 1802.882 kb on + strand, within MPMX19_01710 at 1802.882 kb on + strand, within MPMX19_01710 at 1802.883 kb on - strand, within MPMX19_01710 at 1802.883 kb on - strand, within MPMX19_01710 at 1802.883 kb on - strand, within MPMX19_01710 at 1802.883 kb on - strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.010 kb on - strand, within MPMX19_01710 at 1803.010 kb on - strand, within MPMX19_01710 at 1803.010 kb on - strand, within MPMX19_01710
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 1,801,459 - +0.2 1,801,459 - -0.2 1,801,488 - -0.1 1,801,488 - -0.1 1,801,488 - +0.0 1,801,488 - -1.8 1,801,488 - -0.3 1,801,488 - -1.2 1,801,488 - -1.8 1,801,488 - -0.1 1,801,519 - +1.3 1,801,519 - -1.6 1,801,652 - MPMX19_01708 0.17 -1.0 1,801,652 - MPMX19_01708 0.17 -1.1 1,801,820 + MPMX19_01708 0.52 -1.4 1,801,820 + MPMX19_01708 0.52 -0.7 1,801,820 + MPMX19_01708 0.52 +0.0 1,801,821 - MPMX19_01708 0.52 +2.2 1,801,821 - MPMX19_01708 0.52 -0.1 1,801,821 - MPMX19_01708 0.52 -0.4 1,801,821 - MPMX19_01708 0.52 +0.2 1,801,821 - MPMX19_01708 0.52 -1.6 1,802,036 + +0.2 1,802,036 + -3.1 1,802,036 + -0.3 1,802,036 + -0.1 1,802,036 + +0.5 1,802,036 + -0.9 1,802,036 + -1.8 1,802,036 + -1.2 1,802,036 + -1.4 1,802,036 + +0.9 1,802,036 + -0.5 1,802,037 - +0.6 1,802,037 - -0.2 1,802,037 - -1.0 1,802,037 - -1.4 1,802,037 - -0.8 1,802,037 - -2.6 1,802,037 - -1.7 1,802,037 - -1.0 1,802,037 - +0.9 1,802,037 - -0.2 1,802,037 - -1.4 1,802,037 - -0.4 1,802,037 - +1.0 1,802,037 - +0.4 1,802,042 + +0.4 1,802,042 + +1.0 1,802,042 + +0.1 1,802,042 + -0.6 1,802,042 + +0.2 1,802,042 + -1.2 1,802,043 - -1.4 1,802,343 + MPMX19_01709 0.63 -0.6 1,802,470 + -3.1 1,802,470 + +0.5 1,802,470 + -0.1 1,802,485 + +0.5 1,802,485 + +0.5 1,802,485 + +0.5 1,802,485 + -0.4 1,802,485 + -0.5 1,802,485 + -0.8 1,802,485 + -0.2 1,802,485 + -1.3 1,802,485 + -0.4 1,802,485 + -0.7 1,802,485 + -1.4 1,802,485 + +0.2 1,802,485 + +0.3 1,802,582 + -1.3 1,802,582 + -2.1 1,802,582 + +1.0 1,802,582 + -0.5 1,802,582 + -1.2 1,802,582 + -0.4 1,802,582 + -1.8 1,802,582 + +0.2 1,802,582 + -0.5 1,802,582 + +0.6 1,802,583 - +0.2 1,802,583 - +0.6 1,802,583 - -0.6 1,802,583 - -1.3 1,802,583 - +0.5 1,802,583 - -1.3 1,802,583 - -1.0 1,802,583 - -0.4 1,802,583 - -0.6 1,802,583 - -0.1 1,802,583 - -1.2 1,802,583 - -0.8 1,802,615 + -1.7 1,802,615 + -2.0 1,802,615 + -1.8 1,802,615 + +0.0 1,802,615 + +0.8 1,802,616 - +0.2 1,802,616 - +0.6 1,802,616 - -1.2 1,802,616 - +0.8 1,802,786 + MPMX19_01710 0.19 -1.6 1,802,786 + MPMX19_01710 0.19 -0.6 1,802,786 + MPMX19_01710 0.19 -0.2 1,802,786 + MPMX19_01710 0.19 -1.6 1,802,786 + MPMX19_01710 0.19 -0.4 1,802,786 + MPMX19_01710 0.19 +0.3 1,802,786 + MPMX19_01710 0.19 -0.8 1,802,787 - MPMX19_01710 0.19 -0.8 1,802,787 - MPMX19_01710 0.19 -0.5 1,802,787 - MPMX19_01710 0.19 -0.5 1,802,787 - MPMX19_01710 0.19 +0.2 1,802,787 - MPMX19_01710 0.19 -2.0 1,802,787 - MPMX19_01710 0.19 -0.9 1,802,787 - MPMX19_01710 0.19 +0.6 1,802,787 - MPMX19_01710 0.19 +0.8 1,802,787 - MPMX19_01710 0.19 +0.6 1,802,787 - MPMX19_01710 0.19 +1.1 1,802,787 - MPMX19_01710 0.19 -1.4 1,802,787 - MPMX19_01710 0.19 +0.1 1,802,787 - MPMX19_01710 0.19 +1.1 1,802,787 - MPMX19_01710 0.19 -0.7 1,802,879 + MPMX19_01710 0.27 -1.7 1,802,879 + MPMX19_01710 0.27 +0.2 1,802,879 + MPMX19_01710 0.27 -1.0 1,802,879 + MPMX19_01710 0.27 -0.2 1,802,879 + MPMX19_01710 0.27 +0.2 1,802,879 + MPMX19_01710 0.27 +0.0 1,802,879 + MPMX19_01710 0.27 -0.9 1,802,879 + MPMX19_01710 0.27 -0.2 1,802,879 + MPMX19_01710 0.27 +0.4 1,802,879 + MPMX19_01710 0.27 -0.4 1,802,879 + MPMX19_01710 0.27 -1.7 1,802,879 + MPMX19_01710 0.27 -0.0 1,802,879 + MPMX19_01710 0.27 -0.4 1,802,879 + MPMX19_01710 0.27 -0.3 1,802,879 + MPMX19_01710 0.27 -0.4 1,802,879 + MPMX19_01710 0.27 +1.4 1,802,879 + MPMX19_01710 0.27 -0.6 1,802,879 + MPMX19_01710 0.27 +0.0 1,802,879 + MPMX19_01710 0.27 +0.6 1,802,879 + MPMX19_01710 0.27 -1.0 1,802,879 + MPMX19_01710 0.27 -0.6 1,802,879 + MPMX19_01710 0.27 +0.2 1,802,879 + MPMX19_01710 0.27 -1.2 1,802,879 + MPMX19_01710 0.27 -0.3 1,802,879 + MPMX19_01710 0.27 -0.9 1,802,879 + MPMX19_01710 0.27 +0.5 1,802,879 + MPMX19_01710 0.27 -0.2 1,802,880 - MPMX19_01710 0.27 -1.2 1,802,880 - MPMX19_01710 0.27 +0.2 1,802,880 - MPMX19_01710 0.27 +1.1 1,802,880 - MPMX19_01710 0.27 -0.4 1,802,880 - MPMX19_01710 0.27 -1.6 1,802,880 - MPMX19_01710 0.27 +0.4 1,802,880 - MPMX19_01710 0.27 -1.6 1,802,880 - MPMX19_01710 0.27 +0.6 1,802,880 - MPMX19_01710 0.27 -1.3 1,802,880 - MPMX19_01710 0.27 -1.4 1,802,880 - MPMX19_01710 0.27 +0.6 1,802,880 - MPMX19_01710 0.27 -0.7 1,802,880 - MPMX19_01710 0.27 +0.2 1,802,880 - MPMX19_01710 0.27 -1.4 1,802,880 - MPMX19_01710 0.27 -0.6 1,802,880 - MPMX19_01710 0.27 -1.0 1,802,880 - MPMX19_01710 0.27 -0.6 1,802,880 - MPMX19_01710 0.27 -0.6 1,802,880 - MPMX19_01710 0.27 -1.7 1,802,880 - MPMX19_01710 0.27 -1.9 1,802,880 - MPMX19_01710 0.27 -0.4 1,802,880 - MPMX19_01710 0.27 -0.8 1,802,880 - MPMX19_01710 0.27 -0.8 1,802,880 - MPMX19_01710 0.27 +1.0 1,802,880 - MPMX19_01710 0.27 -0.5 1,802,880 - MPMX19_01710 0.27 -0.5 1,802,880 - MPMX19_01710 0.27 +0.3 1,802,880 - MPMX19_01710 0.27 -0.7 1,802,880 - MPMX19_01710 0.27 -0.9 1,802,880 - MPMX19_01710 0.27 +0.6 1,802,880 - MPMX19_01710 0.27 -1.0 1,802,880 - MPMX19_01710 0.27 -0.5 1,802,880 - MPMX19_01710 0.27 -0.6 1,802,880 - MPMX19_01710 0.27 -1.4 1,802,880 - MPMX19_01710 0.27 +0.7 1,802,880 - MPMX19_01710 0.27 -0.8 1,802,880 - MPMX19_01710 0.27 -1.4 1,802,880 - MPMX19_01710 0.27 +0.6 1,802,880 - MPMX19_01710 0.27 -1.5 1,802,880 - MPMX19_01710 0.27 -0.6 1,802,880 - MPMX19_01710 0.27 -0.6 1,802,880 - MPMX19_01710 0.27 -1.9 1,802,880 - MPMX19_01710 0.27 +1.2 1,802,882 + MPMX19_01710 0.27 +1.9 1,802,882 + MPMX19_01710 0.27 +0.0 1,802,882 + MPMX19_01710 0.27 -1.3 1,802,883 - MPMX19_01710 0.27 -1.7 1,802,883 - MPMX19_01710 0.27 -1.2 1,802,883 - MPMX19_01710 0.27 +0.7 1,802,883 - MPMX19_01710 0.27 -0.2 1,803,009 + MPMX19_01710 0.39 -0.2 1,803,009 + MPMX19_01710 0.39 +0.3 1,803,009 + MPMX19_01710 0.39 -0.3 1,803,009 + MPMX19_01710 0.39 +1.2 1,803,009 + MPMX19_01710 0.39 -0.1 1,803,009 + MPMX19_01710 0.39 -2.3 1,803,010 - MPMX19_01710 0.39 -0.4 1,803,010 - MPMX19_01710 0.39 -1.0 1,803,010 - MPMX19_01710 0.39 +0.3
Or see this region's nucleotide sequence