Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01650

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01648 and MPMX19_01649 are separated by 104 nucleotidesMPMX19_01649 and MPMX19_01650 are separated by 117 nucleotidesMPMX19_01650 and MPMX19_01651 are separated by 128 nucleotidesMPMX19_01651 and MPMX19_01652 are separated by 59 nucleotides MPMX19_01648: MPMX19_01648 - hypothetical protein, at 1,733,169 to 1,733,561 _01648 MPMX19_01649: MPMX19_01649 - Intermembrane phospholipid transport system binding protein MlaD, at 1,733,666 to 1,734,187 _01649 MPMX19_01650: MPMX19_01650 - hypothetical protein, at 1,734,305 to 1,734,571 _01650 MPMX19_01651: MPMX19_01651 - hypothetical protein, at 1,734,700 to 1,735,155 _01651 MPMX19_01652: MPMX19_01652 - hypothetical protein, at 1,735,215 to 1,735,877 _01652 Position (kb) 1734 1735Strain fitness (log2 ratio) -2 -1 0 1at 1733.328 kb on + strand, within MPMX19_01648at 1733.328 kb on + strand, within MPMX19_01648at 1733.328 kb on + strand, within MPMX19_01648at 1733.328 kb on + strand, within MPMX19_01648at 1733.328 kb on + strand, within MPMX19_01648at 1733.328 kb on + strand, within MPMX19_01648at 1733.328 kb on + strand, within MPMX19_01648at 1733.329 kb on - strand, within MPMX19_01648at 1733.329 kb on - strand, within MPMX19_01648at 1733.424 kb on + strand, within MPMX19_01648at 1733.456 kb on + strand, within MPMX19_01648at 1733.456 kb on + strand, within MPMX19_01648at 1733.481 kb on + strand, within MPMX19_01648at 1733.481 kb on + strand, within MPMX19_01648at 1733.538 kb on + strandat 1733.538 kb on + strandat 1733.539 kb on - strandat 1733.659 kb on + strandat 1733.659 kb on + strandat 1733.665 kb on + strandat 1733.665 kb on + strandat 1733.665 kb on + strandat 1733.665 kb on + strandat 1733.665 kb on + strandat 1733.665 kb on + strandat 1733.666 kb on - strandat 1733.742 kb on - strand, within MPMX19_01649at 1733.775 kb on - strand, within MPMX19_01649at 1733.888 kb on + strand, within MPMX19_01649at 1733.889 kb on - strand, within MPMX19_01649at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.625 kb on + strandat 1734.625 kb on + strandat 1734.649 kb on + strandat 1734.649 kb on + strandat 1734.649 kb on + strandat 1734.649 kb on + strandat 1734.649 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.750 kb on + strand, within MPMX19_01651at 1734.750 kb on + strand, within MPMX19_01651at 1734.750 kb on + strand, within MPMX19_01651at 1735.216 kb on + strandat 1735.216 kb on + strandat 1735.217 kb on - strandat 1735.217 kb on - strandat 1735.217 kb on - strandat 1735.217 kb on - strandat 1735.262 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
1,733,328 + MPMX19_01648 0.40 -1.2
1,733,328 + MPMX19_01648 0.40 -0.3
1,733,328 + MPMX19_01648 0.40 +1.2
1,733,328 + MPMX19_01648 0.40 -0.4
1,733,328 + MPMX19_01648 0.40 -0.3
1,733,328 + MPMX19_01648 0.40 -0.9
1,733,328 + MPMX19_01648 0.40 +1.2
1,733,329 - MPMX19_01648 0.41 +0.7
1,733,329 - MPMX19_01648 0.41 -1.2
1,733,424 + MPMX19_01648 0.65 +0.4
1,733,456 + MPMX19_01648 0.73 -0.9
1,733,456 + MPMX19_01648 0.73 -2.2
1,733,481 + MPMX19_01648 0.79 -0.6
1,733,481 + MPMX19_01648 0.79 +0.4
1,733,538 + -1.5
1,733,538 + -0.8
1,733,539 - +0.8
1,733,659 + -1.0
1,733,659 + -1.5
1,733,665 + -2.1
1,733,665 + -0.3
1,733,665 + +0.9
1,733,665 + -0.3
1,733,665 + -1.6
1,733,665 + -0.1
1,733,666 - -1.0
1,733,742 - MPMX19_01649 0.15 -0.2
1,733,775 - MPMX19_01649 0.21 +0.9
1,733,888 + MPMX19_01649 0.43 -1.8
1,733,889 - MPMX19_01649 0.43 +0.0
1,734,533 + MPMX19_01650 0.85 -1.0
1,734,533 + MPMX19_01650 0.85 -2.0
1,734,533 + MPMX19_01650 0.85 -1.2
1,734,533 + MPMX19_01650 0.85 -1.4
1,734,533 + MPMX19_01650 0.85 -0.7
1,734,533 + MPMX19_01650 0.85 +0.0
1,734,533 + MPMX19_01650 0.85 -0.2
1,734,533 + MPMX19_01650 0.85 -1.3
1,734,533 + MPMX19_01650 0.85 +0.3
1,734,533 + MPMX19_01650 0.85 -0.6
1,734,533 + MPMX19_01650 0.85 -0.9
1,734,533 + MPMX19_01650 0.85 -1.0
1,734,533 + MPMX19_01650 0.85 -1.0
1,734,533 + MPMX19_01650 0.85 -0.8
1,734,533 + MPMX19_01650 0.85 +0.1
1,734,533 + MPMX19_01650 0.85 -2.2
1,734,533 + MPMX19_01650 0.85 -0.7
1,734,533 + MPMX19_01650 0.85 +0.2
1,734,533 + MPMX19_01650 0.85 -0.7
1,734,533 + MPMX19_01650 0.85 -0.2
1,734,533 + MPMX19_01650 0.85 -0.7
1,734,533 + MPMX19_01650 0.85 -0.2
1,734,533 + MPMX19_01650 0.85 +1.6
1,734,533 + MPMX19_01650 0.85 -0.4
1,734,533 + MPMX19_01650 0.85 -1.0
1,734,533 + MPMX19_01650 0.85 -1.1
1,734,533 + MPMX19_01650 0.85 -1.0
1,734,533 + MPMX19_01650 0.85 +0.9
1,734,533 + MPMX19_01650 0.85 +0.4
1,734,533 + MPMX19_01650 0.85 +0.4
1,734,534 - MPMX19_01650 0.86 +0.4
1,734,534 - MPMX19_01650 0.86 -0.9
1,734,534 - MPMX19_01650 0.86 -0.5
1,734,534 - MPMX19_01650 0.86 +0.0
1,734,534 - MPMX19_01650 0.86 -1.2
1,734,534 - MPMX19_01650 0.86 +0.7
1,734,534 - MPMX19_01650 0.86 -0.3
1,734,534 - MPMX19_01650 0.86 +0.7
1,734,534 - MPMX19_01650 0.86 +0.1
1,734,534 - MPMX19_01650 0.86 -0.2
1,734,534 - MPMX19_01650 0.86 -2.3
1,734,534 - MPMX19_01650 0.86 +0.0
1,734,534 - MPMX19_01650 0.86 -2.6
1,734,534 - MPMX19_01650 0.86 -0.8
1,734,534 - MPMX19_01650 0.86 -0.8
1,734,534 - MPMX19_01650 0.86 -1.2
1,734,534 - MPMX19_01650 0.86 -0.4
1,734,625 + -0.1
1,734,625 + -0.1
1,734,649 + -1.1
1,734,649 + -0.6
1,734,649 + +0.0
1,734,649 + -0.9
1,734,649 + +0.5
1,734,719 + -0.6
1,734,719 + -1.3
1,734,719 + -0.9
1,734,719 + -0.6
1,734,719 + -2.0
1,734,719 + +0.1
1,734,750 + MPMX19_01651 0.11 -1.4
1,734,750 + MPMX19_01651 0.11 -1.6
1,734,750 + MPMX19_01651 0.11 +0.6
1,735,216 + -1.4
1,735,216 + -1.0
1,735,217 - +0.2
1,735,217 - -1.2
1,735,217 - -0.9
1,735,217 - +0.0
1,735,262 - -0.6

Or see this region's nucleotide sequence