Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01424

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM, start OD=0.1
				remove
1,486,216	+	MPMX19_01422	0.23	-1.1
1,486,216	+	MPMX19_01422	0.23	-0.9
1,486,216	+	MPMX19_01422	0.23	-0.4
1,486,216	+	MPMX19_01422	0.23	-1.3
1,486,216	+	MPMX19_01422	0.23	-1.7
1,486,216	+	MPMX19_01422	0.23	+0.6
1,486,216	+	MPMX19_01422	0.23	-1.9
1,486,216	+	MPMX19_01422	0.23	-0.6
1,486,216	+	MPMX19_01422	0.23	-0.2
1,486,216	+	MPMX19_01422	0.23	-0.4
1,486,217	-	MPMX19_01422	0.24	-2.9
1,486,217	-	MPMX19_01422	0.24	-0.3
1,486,217	-	MPMX19_01422	0.24	-1.2
1,486,217	-	MPMX19_01422	0.24	+2.1
1,486,217	-	MPMX19_01422	0.24	-1.7
1,486,217	-	MPMX19_01422	0.24	+0.0
1,486,217	-	MPMX19_01422	0.24	-1.8
1,486,217	-	MPMX19_01422	0.24	-1.7
1,486,217	-	MPMX19_01422	0.24	+0.3
1,486,217	-	MPMX19_01422	0.24	-2.3
1,486,217	-	MPMX19_01422	0.24	-0.1
1,486,217	-	MPMX19_01422	0.24	-0.5
1,486,217	-	MPMX19_01422	0.24	-0.8
1,486,217	-	MPMX19_01422	0.24	+0.3
1,486,217	-	MPMX19_01422	0.24	-2.1
1,486,219	+	MPMX19_01422	0.24	-2.2
1,486,219	+	MPMX19_01422	0.24	-0.6
1,486,219	+	MPMX19_01422	0.24	-0.6
1,486,220	-	MPMX19_01422	0.24	+1.0
1,486,220	-	MPMX19_01422	0.24	+0.3
1,486,220	-	MPMX19_01422	0.24	+0.0
1,486,220	-	MPMX19_01422	0.24	-2.0
1,486,220	-	MPMX19_01422	0.24	-0.1
1,486,348	+	MPMX19_01422	0.42	+0.1
1,486,348	+	MPMX19_01422	0.42	-2.5
1,486,348	+	MPMX19_01422	0.42	+0.6
1,486,348	+	MPMX19_01422	0.42	-0.6
1,486,348	+	MPMX19_01422	0.42	-0.1
1,486,348	+	MPMX19_01422	0.42	+0.9
1,486,349	-	MPMX19_01422	0.42	+0.2
1,486,349	-	MPMX19_01422	0.42	-0.6
1,486,349	-	MPMX19_01422	0.42	-2.3
1,486,349	-	MPMX19_01422	0.42	-0.9
1,486,349	-	MPMX19_01422	0.42	+0.6
1,486,349	-	MPMX19_01422	0.42	-0.5
1,486,349	-	MPMX19_01422	0.42	-3.0
1,486,349	-	MPMX19_01422	0.42	-0.7
1,486,349	-	MPMX19_01422	0.42	+0.0
1,486,349	-	MPMX19_01422	0.42	-1.6
1,486,349	-	MPMX19_01422	0.42	-0.4
1,486,354	+	MPMX19_01422	0.42	-1.0
1,486,354	+	MPMX19_01422	0.42	-0.1
1,486,354	+	MPMX19_01422	0.42	+0.1
1,486,354	+	MPMX19_01422	0.42	-1.7
1,486,355	-	MPMX19_01422	0.43	-1.9
1,486,355	-	MPMX19_01422	0.43	-0.6
1,486,355	-	MPMX19_01422	0.43	+0.2
1,486,355	-	MPMX19_01422	0.43	-1.4
1,486,355	-	MPMX19_01422	0.43	-0.3
1,486,355	-	MPMX19_01422	0.43	-0.6
1,486,355	-	MPMX19_01422	0.43	-0.6
1,486,355	-	MPMX19_01422	0.43	-1.3
1,486,355	-	MPMX19_01422	0.43	+0.8
1,486,470	+	MPMX19_01422	0.59	-0.9
1,486,559	+	MPMX19_01422	0.71	-0.2
1,486,559	+	MPMX19_01422	0.71	-0.1
1,486,559	+	MPMX19_01422	0.71	+0.0
1,486,559	+	MPMX19_01422	0.71	-1.2
1,486,559	+	MPMX19_01422	0.71	-0.4
1,486,559	+	MPMX19_01422	0.71	+0.5
1,486,559	+	MPMX19_01422	0.71	+0.1
1,486,559	+	MPMX19_01422	0.71	+0.5
1,486,559	+	MPMX19_01422	0.71	+1.4
1,486,559	+	MPMX19_01422	0.71	-1.1
1,486,559	+	MPMX19_01422	0.71	+0.9
1,486,559	+	MPMX19_01422	0.71	-0.7
1,486,559	+	MPMX19_01422	0.71	-0.5
1,486,559	+	MPMX19_01422	0.71	+0.9
1,486,559	+	MPMX19_01422	0.71	-1.8
1,486,559	+	MPMX19_01422	0.71	+0.8
1,486,559	+	MPMX19_01422	0.71	-0.3
1,486,559	+	MPMX19_01422	0.71	-0.2
1,486,559	+	MPMX19_01422	0.71	+0.6
1,486,559	+	MPMX19_01422	0.71	-1.0
1,486,559	+	MPMX19_01422	0.71	+0.6
1,486,559	+	MPMX19_01422	0.71	-1.1
1,486,559	+	MPMX19_01422	0.71	+1.6
1,486,559	+	MPMX19_01422	0.71	+1.4
1,486,559	+	MPMX19_01422	0.71	-1.1
1,486,559	+	MPMX19_01422	0.71	+0.9
1,486,559	+	MPMX19_01422	0.71	-1.2
1,486,559	+	MPMX19_01422	0.71	+0.3
1,486,559	+	MPMX19_01422	0.71	-0.5
1,486,559	+	MPMX19_01422	0.71	+0.4
1,486,559	+	MPMX19_01422	0.71	-0.2
1,486,559	+	MPMX19_01422	0.71	-0.9
1,486,559	+	MPMX19_01422	0.71	-0.4
1,486,559	+	MPMX19_01422	0.71	+1.3
1,486,559	+	MPMX19_01422	0.71	-0.7
1,486,560	-	MPMX19_01422	0.71	-0.7
1,486,560	-	MPMX19_01422	0.71	-1.7
1,486,560	-	MPMX19_01422	0.71	+0.3
1,486,560	-	MPMX19_01422	0.71	-0.2
1,486,560	-	MPMX19_01422	0.71	+0.8
1,486,560	-	MPMX19_01422	0.71	-0.4
1,486,560	-	MPMX19_01422	0.71	-0.3
1,486,560	-	MPMX19_01422	0.71	-1.3
1,486,560	-	MPMX19_01422	0.71	-0.8
1,486,560	-	MPMX19_01422	0.71	+0.0
1,486,560	-	MPMX19_01422	0.71	-0.1
1,486,560	-	MPMX19_01422	0.71	-0.4
1,486,560	-	MPMX19_01422	0.71	-1.9
1,486,560	-	MPMX19_01422	0.71	+0.5
1,486,560	-	MPMX19_01422	0.71	-0.1
1,486,560	-	MPMX19_01422	0.71	-1.6
1,486,560	-	MPMX19_01422	0.71	+0.0
1,486,560	-	MPMX19_01422	0.71	-1.9
1,486,560	-	MPMX19_01422	0.71	+0.9
1,486,560	-	MPMX19_01422	0.71	+1.1
1,486,560	-	MPMX19_01422	0.71	-0.4
1,486,560	-	MPMX19_01422	0.71	+0.2
1,486,560	-	MPMX19_01422	0.71	-0.3
1,486,560	-	MPMX19_01422	0.71	-0.6
1,486,560	-	MPMX19_01422	0.71	+0.1
1,486,560	-	MPMX19_01422	0.71	-0.5
1,486,560	-	MPMX19_01422	0.71	-0.3
1,486,560	-	MPMX19_01422	0.71	-0.1
1,486,560	-	MPMX19_01422	0.71	-0.9
1,486,560	-	MPMX19_01422	0.71	-0.7
1,486,560	-	MPMX19_01422	0.71	-1.0
1,486,560	-	MPMX19_01422	0.71	+1.1
1,486,560	-	MPMX19_01422	0.71	-1.7
1,486,560	-	MPMX19_01422	0.71	-0.7
1,486,560	-	MPMX19_01422	0.71	-0.9
1,486,560	-	MPMX19_01422	0.71	-0.8
1,486,560	-	MPMX19_01422	0.71	+0.6
1,486,560	-	MPMX19_01422	0.71	-1.6
1,486,560	-	MPMX19_01422	0.71	-0.7
1,486,560	-	MPMX19_01422	0.71	-0.7
1,486,700	+			-0.9
1,486,700	+			-0.8
1,486,700	+			-1.2
1,486,701	-			+0.6
1,486,701	-			+0.0
1,486,701	-			-0.2
1,486,813	+			-0.4
1,486,813	+			-1.2
1,486,813	+			-0.5
1,486,813	+			+1.5
1,486,813	+			+0.2
1,486,813	+			+0.3
1,486,813	+			+0.6
1,486,814	-			-0.4
1,486,814	-			+0.5
1,486,814	-			-0.1
1,486,814	-			+0.0
1,486,814	-			-0.6
1,486,814	-			-0.4
1,486,814	-			-0.5
1,486,814	-			-0.7
1,486,814	-			-0.9
1,486,814	-			+1.4
1,486,814	-			+0.4
1,486,862	+			-1.8
1,486,862	+			-1.7
1,486,863	-			-0.4
1,487,129	+	MPMX19_01423	0.77	-1.0
1,487,129	+	MPMX19_01423	0.77	+1.0
1,487,130	-	MPMX19_01423	0.77	-1.1
1,487,130	-	MPMX19_01423	0.77	+0.1
1,487,145	+	MPMX19_01423	0.82	-0.4
1,487,145	+	MPMX19_01423	0.82	-1.2
1,487,157	+			-0.7
1,487,157	+			-1.7
1,487,157	+			+1.3
1,487,157	+			+0.0
1,487,157	+			-0.7
1,487,157	+			-0.2
1,487,158	-			+1.1
1,487,158	-			-1.2
1,487,158	-			-1.6
1,487,158	-			-2.2
1,487,158	-			-1.5
1,487,158	-			-0.9
1,487,158	-			+0.0
1,487,158	-			-0.7
1,487,158	-			-1.2
1,487,243	+			+0.8
1,487,243	+			+0.1
1,487,243	+			-0.8
1,487,243	+			-1.7
1,487,243	+			-1.4
1,487,244	-			-1.2
1,487,244	-			-0.7
1,487,244	-			-1.1
1,487,244	-			-0.5
1,487,296	-	MPMX19_01424	0.10	+0.0
1,487,881	-	MPMX19_01424	0.52	-1.4
1,487,881	-	MPMX19_01424	0.52	-0.7
1,487,919	+	MPMX19_01424	0.55	-0.7
1,487,919	+	MPMX19_01424	0.55	-0.7
1,487,919	+	MPMX19_01424	0.55	+0.3
1,487,919	+	MPMX19_01424	0.55	+0.1
1,487,919	+	MPMX19_01424	0.55	+0.7
1,487,919	-	MPMX19_01424	0.55	+0.3
1,487,920	-	MPMX19_01424	0.55	-1.2
1,487,937	+	MPMX19_01424	0.56	+0.4
1,487,938	-	MPMX19_01424	0.56	+0.5
1,488,175	+	MPMX19_01424	0.73	+1.2
1,488,175	+	MPMX19_01424	0.73	-0.2
1,488,175	+	MPMX19_01424	0.73	-0.2
1,488,175	+	MPMX19_01424	0.73	+0.0
1,488,175	+	MPMX19_01424	0.73	-1.0
1,488,175	+	MPMX19_01424	0.73	-2.0
1,488,175	+	MPMX19_01424	0.73	+0.2
1,488,175	+	MPMX19_01424	0.73	+1.4
1,488,175	+	MPMX19_01424	0.73	-1.0
1,488,175	+	MPMX19_01424	0.73	+0.9
1,488,175	+	MPMX19_01424	0.73	-1.1
1,488,175	+	MPMX19_01424	0.73	-0.1
1,488,176	-	MPMX19_01424	0.73	+0.1
1,488,176	-	MPMX19_01424	0.73	-1.0
1,488,176	-	MPMX19_01424	0.73	-0.5
1,488,176	-	MPMX19_01424	0.73	-0.1
1,488,176	-	MPMX19_01424	0.73	-0.1
1,488,176	-	MPMX19_01424	0.73	+0.1
1,488,176	-	MPMX19_01424	0.73	-0.7
1,488,176	-	MPMX19_01424	0.73	+0.1
1,488,176	-	MPMX19_01424	0.73	-0.3
1,488,176	-	MPMX19_01424	0.73	-0.3
1,488,176	-	MPMX19_01424	0.73	+0.3
1,488,176	-	MPMX19_01424	0.73	+0.9
1,488,176	-	MPMX19_01424	0.73	-0.3
1,488,176	-	MPMX19_01424	0.73	-1.7
1,488,176	-	MPMX19_01424	0.73	+0.6
1,488,486	+			-0.6
1,488,486	+			-0.9
1,488,487	-			+0.2
1,488,506	+			-0.9
1,488,506	+			-0.4
1,488,506	+			+0.0
1,488,506	+			-2.4
1,488,506	+			+0.5
1,488,506	+			-0.5
1,488,506	+			-0.1
1,488,506	+			-1.0
1,488,506	+			-0.1
1,488,506	+			+1.2
1,488,507	-			-1.2
1,488,507	-			-1.6
1,488,507	-			-0.5
1,488,507	-			-0.8
1,488,507	-			+0.5
1,488,715	+			-1.6
1,488,715	+			+1.2
1,488,715	+			+0.5
1,488,715	+			+0.0
1,488,716	-			-1.2
1,488,747	+			-0.9
1,488,757	+			-3.0
1,488,758	-			+0.3
1,488,758	-			-1.4
1,488,847	-			+0.8
1,488,847	-			-2.0
1,488,847	-			-0.6
1,488,847	-			-0.6
1,488,847	-			-0.6
1,488,847	-			+0.3
1,488,847	-			-0.4
1,488,847	-			+1.4
1,489,199	+			-1.3
1,489,199	+			+0.6
1,489,199	+			-0.5
1,489,199	+			-0.2
1,489,199	+			+0.7
1,489,199	+			+0.2
1,489,200	-			+0.0
1,489,200	-			-2.6
1,489,200	-			-1.0
1,489,200	-			-1.6
1,489,282	+			-3.0
1,489,283	-			-0.1
1,489,315	+			-0.4
1,489,315	+			-2.9
1,489,316	-			+0.3
1,489,316	-			-0.8
1,489,316	-			+0.1
1,489,318	-			-1.0
1,489,318	-			-0.1
1,489,318	-			-1.7
1,489,319	+			-1.0
1,489,319	+			-2.2
1,489,319	+			+0.7
1,489,320	-			-2.3
1,489,354	-			+0.0
1,489,388	-			-1.8
1,489,388	-			+1.0
1,489,407	+			+1.6
1,489,407	+			-0.4
1,489,408	-			-0.4
1,489,432	+			-0.8
1,489,432	+			-2.4
1,489,442	+			-0.2
1,489,442	+			+0.3
1,489,442	+			+0.5
1,489,442	+			-0.5
1,489,442	+			-1.8
1,489,442	+			+0.4
1,489,442	+			+1.4
1,489,442	+			-0.2
1,489,443	-			-0.2
1,489,443	-			-0.7
1,489,443	-			-1.0
1,489,443	-			+0.7
1,489,443	-			+0.9
1,489,443	-			-1.2
1,489,443	-			-0.6
1,489,443	-			+0.2
1,489,443	-			-2.2
1,489,443	-			+0.2
1,489,443	-			+0.5
1,489,495	+	MPMX19_01426	0.23	-0.8

Or see this region's nucleotide sequence