Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01198

Experiment: NL-CCM, start OD=0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.1
1,246,623	-		MPMX19_01197	0.12	-0.6
1,246,623	-		MPMX19_01197	0.12	+1.0
1,246,726	+		MPMX19_01197	0.33	-1.7
1,246,726	+		MPMX19_01197	0.33	-1.3
1,246,726	+		MPMX19_01197	0.33	-0.8
1,246,726	+		MPMX19_01197	0.33	-0.4
1,246,727	-		MPMX19_01197	0.34	-0.3
1,246,727	-		MPMX19_01197	0.34	-0.4
1,246,727	-		MPMX19_01197	0.34	-1.1
1,246,727	-		MPMX19_01197	0.34	-0.6
1,246,727	-		MPMX19_01197	0.34	-0.8
1,246,727	-		MPMX19_01197	0.34	-0.8
1,246,944	-		MPMX19_01197	0.79	-0.6
1,247,069	+				-0.6
1,247,069	+				-1.7
1,247,069	+				+0.5
1,247,069	+				+0.1
1,247,069	+				-0.5
1,247,069	+				-2.0
1,247,069	+				-0.2
1,247,069	+				-0.6
1,247,070	-				-1.0
1,247,070	-				-0.0
1,247,070	-				+1.5
1,247,070	-				-0.5
1,247,070	-				-1.5
1,247,131	-				-1.0
1,247,131	-				-0.8
1,247,131	-				+0.3
1,247,218	+				-1.5
1,247,250	+				-1.9
1,247,250	+				-0.0
1,247,263	-				-0.3
1,247,272	+				+0.2
1,247,272	+				-0.0
1,247,272	+				-1.5
1,247,272	+				-0.5
1,247,272	+				-1.0
1,247,272	+				+0.9
1,247,272	+				-2.0
1,247,272	+				-0.5
1,247,272	+				-0.5
1,247,272	+				-0.5
1,247,273	-				+0.0
1,247,273	-				-2.0
1,247,273	-				-0.6
1,247,273	-				-0.2
1,247,273	-				-1.0
1,247,273	-				-1.0
1,247,273	-				-0.0
1,247,273	-				-2.0
1,247,273	-				-0.3
1,247,273	-				+0.7
1,247,273	-				-0.1
1,247,273	-				-0.6
1,247,273	-				+0.1
1,247,273	-				+0.1
1,247,273	-				-0.2
1,247,273	-				+0.5
1,247,273	-				-1.0
1,247,273	-				-1.2
1,247,276	+				+0.3
1,247,276	+				-0.7
1,247,276	+				-0.0
1,247,276	+				-1.5
1,247,276	+				-1.8
1,247,276	+				-1.7
1,247,276	+				-0.2
1,247,276	+				-0.3
1,247,276	+				+1.0
1,247,276	+				-1.6
1,247,276	+				+0.5
1,247,277	-				+0.2
1,247,277	-				+0.6
1,247,277	-				-0.1
1,247,277	-				+0.7
1,247,277	-				-0.8
1,247,277	-				+0.4
1,247,277	-				-0.2
1,247,277	-				-0.1
1,247,277	-				+0.4
1,247,277	-				-0.8
1,247,277	-				+0.1
1,247,277	-				-2.8
1,247,277	-				-1.2
1,247,277	-				-0.5
1,247,277	-				+1.1
1,247,277	-				+0.7
1,247,277	-				-0.8
1,247,277	-				-0.1
1,247,277	-				+0.1
1,247,397	+				-0.2
1,247,397	+				-0.0
1,247,397	+				-0.7
1,247,397	+				+0.2
1,247,397	+				+0.9
1,247,398	-				+0.5
1,247,398	-				+0.3
1,247,398	-				-1.0
1,247,398	-				+2.1
1,247,398	-				-1.7
1,247,398	-				-1.0
1,247,398	-				-1.4
1,247,398	-				-0.3
1,247,398	-				-2.1
1,247,398	-				-3.2
1,247,484	+				-1.5
1,247,484	+				-0.9
1,247,485	-				-0.5
1,247,485	-				+0.5
1,247,485	-				+1.0
1,247,505	+				-0.6
1,247,505	+				-0.0
1,247,506	-				-0.3
1,247,506	-				-1.4
1,247,515	+				-1.6
1,247,515	+				+0.2
1,247,515	+				-0.1
1,247,516	-				-0.7
1,247,633	+				+0.4
1,247,633	+				-1.0
1,247,634	-				+0.4
1,247,646	+		MPMX19_01198	0.10	-0.0
1,247,646	+		MPMX19_01198	0.10	+0.2
1,247,646	+		MPMX19_01198	0.10	-0.3
1,247,646	+		MPMX19_01198	0.10	+0.3
1,247,647	-		MPMX19_01198	0.11	-1.9
1,247,647	-		MPMX19_01198	0.11	+0.2
1,247,647	-		MPMX19_01198	0.11	+0.1
1,247,647	-		MPMX19_01198	0.11	+0.1
1,247,647	-		MPMX19_01198	0.11	-1.0
1,247,647	-		MPMX19_01198	0.11	+1.0
1,247,648	+		MPMX19_01198	0.11	-1.5
1,247,648	+		MPMX19_01198	0.11	-0.8
1,247,648	+		MPMX19_01198	0.11	-0.5
1,247,648	+		MPMX19_01198	0.11	-0.5
1,247,648	+		MPMX19_01198	0.11	+0.7
1,247,648	+		MPMX19_01198	0.11	+0.5
1,247,648	+		MPMX19_01198	0.11	+0.3
1,247,648	+		MPMX19_01198	0.11	-1.0
1,247,648	+		MPMX19_01198	0.11	-1.8
1,247,648	+		MPMX19_01198	0.11	-0.8
1,247,648	+		MPMX19_01198	0.11	+0.1
1,247,648	+		MPMX19_01198	0.11	-0.3
1,247,648	+		MPMX19_01198	0.11	+1.3
1,247,648	+		MPMX19_01198	0.11	+1.3
1,247,648	+		MPMX19_01198	0.11	-1.3
1,247,648	+		MPMX19_01198	0.11	-0.0
1,247,648	-		MPMX19_01198	0.11	-0.4
1,247,649	-		MPMX19_01198	0.12	-0.3
1,247,649	-		MPMX19_01198	0.12	-1.0
1,247,649	-		MPMX19_01198	0.12	-1.9
1,247,649	-		MPMX19_01198	0.12	-1.8
1,247,649	-		MPMX19_01198	0.12	-1.3
1,247,649	-		MPMX19_01198	0.12	-0.2
1,247,649	-		MPMX19_01198	0.12	+0.5
1,247,649	-		MPMX19_01198	0.12	-2.0
1,247,649	-		MPMX19_01198	0.12	-1.1
1,247,649	-		MPMX19_01198	0.12	+0.9
1,247,649	-		MPMX19_01198	0.12	-0.0
1,247,649	-		MPMX19_01198	0.12	+0.6
1,247,649	-		MPMX19_01198	0.12	+1.9
1,247,649	-		MPMX19_01198	0.12	-1.6
1,247,649	-		MPMX19_01198	0.12	+0.1
1,247,649	-		MPMX19_01198	0.12	-0.0
1,247,649	-		MPMX19_01198	0.12	+0.1
1,247,649	-		MPMX19_01198	0.12	+0.1
1,247,649	-		MPMX19_01198	0.12	-0.0
1,247,649	-		MPMX19_01198	0.12	-0.4
1,247,649	-		MPMX19_01198	0.12	-0.6
1,247,649	-		MPMX19_01198	0.12	-1.5
1,247,656	+		MPMX19_01198	0.15	-0.6
1,247,656	+		MPMX19_01198	0.15	+0.2
1,247,656	+		MPMX19_01198	0.15	+0.8
1,247,657	-		MPMX19_01198	0.15	-0.5
1,247,779	+		MPMX19_01198	0.69	-0.5
1,247,779	+		MPMX19_01198	0.69	+0.2
1,247,779	+		MPMX19_01198	0.69	-0.3
1,247,779	+		MPMX19_01198	0.69	+0.8
1,247,779	+		MPMX19_01198	0.69	-0.4
1,247,779	+		MPMX19_01198	0.69	-0.2
1,247,780	-		MPMX19_01198	0.70	-1.1
1,247,780	-		MPMX19_01198	0.70	-0.6
1,247,780	-		MPMX19_01198	0.70	+1.4
1,247,780	-		MPMX19_01198	0.70	-0.4
1,247,780	-		MPMX19_01198	0.70	-1.8
1,247,780	-		MPMX19_01198	0.70	-1.9
1,247,780	-		MPMX19_01198	0.70	-1.0
1,247,780	-		MPMX19_01198	0.70	-0.3
1,247,780	-		MPMX19_01198	0.70	-0.3
1,247,870	+				-1.6
1,247,901	+				-1.5
1,247,901	+				+1.5
1,247,901	+				-0.5
1,248,004	+				-0.0
1,248,004	+				-0.8
1,248,004	+				+1.1
1,248,004	+				-1.9
1,248,005	-				+0.5
1,248,005	-				+0.3
1,248,005	-				-1.0
1,248,005	-				-1.6
1,248,202	+		MPMX19_01199	0.17	-0.6
1,248,202	+		MPMX19_01199	0.17	+1.2
1,248,202	+		MPMX19_01199	0.17	-0.8
1,248,202	+		MPMX19_01199	0.17	-1.3
1,248,202	+		MPMX19_01199	0.17	-0.5
1,248,202	+		MPMX19_01199	0.17	-3.1
1,248,202	+		MPMX19_01199	0.17	-1.5
1,248,202	+		MPMX19_01199	0.17	-0.3
1,248,202	+		MPMX19_01199	0.17	-0.3
1,248,202	+		MPMX19_01199	0.17	-1.2
1,248,202	+		MPMX19_01199	0.17	-1.3
1,248,202	+		MPMX19_01199	0.17	-0.0
1,248,202	+		MPMX19_01199	0.17	-1.3
1,248,202	+		MPMX19_01199	0.17	-0.7
1,248,202	+		MPMX19_01199	0.17	-0.0
1,248,202	+		MPMX19_01199	0.17	+0.5
1,248,202	+		MPMX19_01199	0.17	-0.7
1,248,203	-		MPMX19_01199	0.17	+0.5
1,248,203	-		MPMX19_01199	0.17	-2.2
1,248,203	-		MPMX19_01199	0.17	+1.2
1,248,203	-		MPMX19_01199	0.17	-0.5
1,248,203	-		MPMX19_01199	0.17	+0.4
1,248,203	-		MPMX19_01199	0.17	+0.8
1,248,203	-		MPMX19_01199	0.17	-1.4
1,248,203	-		MPMX19_01199	0.17	-1.5
1,248,203	-		MPMX19_01199	0.17	-1.0
1,248,203	-		MPMX19_01199	0.17	-2.5
1,248,203	-		MPMX19_01199	0.17	-1.8
1,248,203	-		MPMX19_01199	0.17	+0.1
1,248,203	-		MPMX19_01199	0.17	-2.0
1,248,203	-		MPMX19_01199	0.17	-2.3
1,248,203	-		MPMX19_01199	0.17	-0.5
1,248,203	-		MPMX19_01199	0.17	-1.0
1,248,203	-		MPMX19_01199	0.17	-0.6
1,248,270	+		MPMX19_01199	0.21	+0.1
1,248,270	+		MPMX19_01199	0.21	+0.5
1,248,270	+		MPMX19_01199	0.21	-1.3
1,248,270	+		MPMX19_01199	0.21	-0.6
1,248,270	+		MPMX19_01199	0.21	-0.6
1,248,270	+		MPMX19_01199	0.21	+0.7
1,248,271	-		MPMX19_01199	0.21	+0.8
1,248,271	-		MPMX19_01199	0.21	-0.0
1,248,271	-		MPMX19_01199	0.21	-0.3
1,248,271	-		MPMX19_01199	0.21	-0.2
1,248,278	-		MPMX19_01199	0.22	+0.5
1,248,370	+		MPMX19_01199	0.28	+0.5
1,248,371	-		MPMX19_01199	0.28	-0.2
1,248,371	-		MPMX19_01199	0.28	-0.8