Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01140

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM, start OD=0.1
				remove
1,173,633	+	MPMX19_01139	0.72	-0.3
1,173,633	+	MPMX19_01139	0.72	-1.6
1,173,633	+	MPMX19_01139	0.72	+0.6
1,173,634	-	MPMX19_01139	0.72	-1.9
1,173,634	-	MPMX19_01139	0.72	+0.5
1,174,280	+			-0.2
1,174,280	+			+0.5
1,174,280	+			+0.7
1,174,280	+			+0.5
1,174,280	+			-1.3
1,174,280	+			+2.3
1,174,280	+			-0.0
1,174,280	+			-2.0
1,174,280	+			+0.2
1,174,280	+			+0.3
1,174,280	+			-0.5
1,174,280	+			-0.2
1,174,280	+			-1.0
1,174,280	+			+1.0
1,174,280	+			+0.5
1,174,280	+			-1.3
1,174,280	+			-0.5
1,174,280	+			+1.0
1,174,280	+			+0.3
1,174,281	-			-0.0
1,174,281	-			-0.8
1,174,281	-			-0.0
1,174,281	-			+0.5
1,174,281	-			-0.5
1,174,281	-			-0.8
1,174,281	-			+0.4
1,174,281	-			-0.0
1,174,281	-			+1.0
1,174,281	-			-1.7
1,174,281	-			-0.5
1,174,281	-			-0.0
1,174,281	-			-0.5
1,174,281	-			-0.0
1,174,281	-			+0.1
1,174,298	+			-0.8
1,174,298	+			-2.0
1,174,299	-			-0.5
1,174,299	-			-0.3
1,174,299	-			+1.0
1,174,299	-			-2.5
1,174,520	+	MPMX19_01140	0.11	-0.6
1,174,520	+	MPMX19_01140	0.11	-2.3
1,174,520	+	MPMX19_01140	0.11	-2.0
1,174,520	+	MPMX19_01140	0.11	-0.5
1,174,520	+	MPMX19_01140	0.11	+1.0
1,174,520	+	MPMX19_01140	0.11	-0.2
1,174,520	+	MPMX19_01140	0.11	-0.5
1,174,521	-	MPMX19_01140	0.11	+0.2
1,174,521	-	MPMX19_01140	0.11	-0.8
1,174,521	-	MPMX19_01140	0.11	-0.5
1,174,521	-	MPMX19_01140	0.11	+0.5
1,174,665	+	MPMX19_01140	0.16	-0.5
1,174,665	+	MPMX19_01140	0.16	-0.0
1,174,665	+	MPMX19_01140	0.16	-0.8
1,174,665	+	MPMX19_01140	0.16	-0.3
1,174,665	+	MPMX19_01140	0.16	+0.5
1,174,665	+	MPMX19_01140	0.16	+0.5
1,174,665	+	MPMX19_01140	0.16	+0.2
1,174,665	+	MPMX19_01140	0.16	-2.4
1,174,665	+	MPMX19_01140	0.16	-1.6
1,174,665	+	MPMX19_01140	0.16	-1.3
1,174,666	-	MPMX19_01140	0.16	-0.6
1,174,666	-	MPMX19_01140	0.16	-1.0
1,174,666	-	MPMX19_01140	0.16	-1.6
1,174,666	-	MPMX19_01140	0.16	-0.0
1,174,667	+	MPMX19_01140	0.16	+0.2
1,174,667	+	MPMX19_01140	0.16	-0.5
1,174,667	+	MPMX19_01140	0.16	+1.1
1,174,667	+	MPMX19_01140	0.16	-2.0
1,174,667	+	MPMX19_01140	0.16	-0.5
1,174,667	+	MPMX19_01140	0.16	+0.8
1,174,667	+	MPMX19_01140	0.16	-0.8
1,174,667	+	MPMX19_01140	0.16	+1.9
1,174,667	+	MPMX19_01140	0.16	-1.9
1,174,667	+	MPMX19_01140	0.16	-0.8
1,174,667	+	MPMX19_01140	0.16	-1.5
1,174,667	+	MPMX19_01140	0.16	-1.8
1,174,667	+	MPMX19_01140	0.16	-1.3
1,174,668	-	MPMX19_01140	0.16	-0.6
1,174,668	-	MPMX19_01140	0.16	-0.2
1,174,668	-	MPMX19_01140	0.16	-0.5
1,174,668	-	MPMX19_01140	0.16	-0.0
1,174,668	-	MPMX19_01140	0.16	-2.2
1,174,668	-	MPMX19_01140	0.16	+0.4
1,174,668	-	MPMX19_01140	0.16	+0.2
1,174,668	-	MPMX19_01140	0.16	+1.0
1,174,668	-	MPMX19_01140	0.16	+0.7
1,174,668	-	MPMX19_01140	0.16	-1.0
1,174,668	-	MPMX19_01140	0.16	+1.1
1,174,668	-	MPMX19_01140	0.16	+2.1
1,174,668	-	MPMX19_01140	0.16	-0.0
1,174,668	-	MPMX19_01140	0.16	-0.3
1,174,668	-	MPMX19_01140	0.16	-1.0
1,174,730	+	MPMX19_01140	0.18	-0.5
1,174,731	-	MPMX19_01140	0.18	-0.5
1,174,731	-	MPMX19_01140	0.18	+0.5
1,174,742	+	MPMX19_01140	0.19	+0.1
1,174,742	+	MPMX19_01140	0.19	-1.6
1,174,742	+	MPMX19_01140	0.19	-1.0
1,174,742	+	MPMX19_01140	0.19	+0.4
1,174,743	-	MPMX19_01140	0.19	+1.0
1,174,743	-	MPMX19_01140	0.19	-0.2
1,174,743	-	MPMX19_01140	0.19	+0.3
1,174,743	-	MPMX19_01140	0.19	-0.5
1,174,743	-	MPMX19_01140	0.19	-1.7
1,174,883	+	MPMX19_01140	0.24	-0.5
1,174,883	+	MPMX19_01140	0.24	-1.2
1,174,883	+	MPMX19_01140	0.24	+1.0
1,174,884	-	MPMX19_01140	0.24	+0.5
1,174,892	+	MPMX19_01140	0.24	+0.2
1,174,892	+	MPMX19_01140	0.24	+0.7
1,174,892	+	MPMX19_01140	0.24	+2.5
1,174,892	+	MPMX19_01140	0.24	+1.2
1,174,892	+	MPMX19_01140	0.24	-0.0
1,174,892	+	MPMX19_01140	0.24	+1.1
1,174,892	+	MPMX19_01140	0.24	+1.0
1,174,892	+	MPMX19_01140	0.24	+0.3
1,174,893	-	MPMX19_01140	0.24	-0.0
1,174,893	-	MPMX19_01140	0.24	-1.5
1,174,893	-	MPMX19_01140	0.24	-0.8
1,174,893	-	MPMX19_01140	0.24	-0.5
1,174,893	-	MPMX19_01140	0.24	+0.2
1,174,893	-	MPMX19_01140	0.24	-0.6
1,174,893	-	MPMX19_01140	0.24	+2.0
1,174,893	-	MPMX19_01140	0.24	-0.8
1,174,893	-	MPMX19_01140	0.24	-0.3
1,174,893	-	MPMX19_01140	0.24	+1.5
1,175,005	-	MPMX19_01140	0.29	-0.8
1,175,005	-	MPMX19_01140	0.29	-2.4
1,175,129	+	MPMX19_01140	0.33	+0.5
1,175,130	-	MPMX19_01140	0.33	-0.8
1,175,130	-	MPMX19_01140	0.33	-0.0
1,175,130	-	MPMX19_01140	0.33	+0.3
1,175,228	+	MPMX19_01140	0.37	+1.8
1,175,228	+	MPMX19_01140	0.37	+0.2
1,175,228	+	MPMX19_01140	0.37	-0.8
1,175,229	-	MPMX19_01140	0.37	+0.5
1,175,229	-	MPMX19_01140	0.37	-0.0
1,175,229	-	MPMX19_01140	0.37	-0.6
1,175,229	-	MPMX19_01140	0.37	-0.5
1,175,229	-	MPMX19_01140	0.37	-0.3
1,175,229	-	MPMX19_01140	0.37	+1.5
1,175,229	-	MPMX19_01140	0.37	-2.0
1,175,900	+	MPMX19_01140	0.61	+0.8
1,175,900	+	MPMX19_01140	0.61	-1.0
1,175,901	-	MPMX19_01140	0.61	-0.6
1,175,901	-	MPMX19_01140	0.61	+0.2
1,175,901	-	MPMX19_01140	0.61	-1.5
1,175,901	-	MPMX19_01140	0.61	+1.1
1,175,901	-	MPMX19_01140	0.61	+0.3
1,175,901	-	MPMX19_01140	0.61	-1.1
1,175,901	-	MPMX19_01140	0.61	+1.5
1,175,901	-	MPMX19_01140	0.61	+1.3
1,175,924	+	MPMX19_01140	0.62	-1.2
1,175,924	+	MPMX19_01140	0.62	+3.4
1,175,924	+	MPMX19_01140	0.62	+0.5
1,175,924	+	MPMX19_01140	0.62	+1.1
1,175,924	+	MPMX19_01140	0.62	-0.5
1,175,924	+	MPMX19_01140	0.62	-0.0
1,175,924	+	MPMX19_01140	0.62	-0.8
1,175,925	-	MPMX19_01140	0.62	-0.8
1,175,925	-	MPMX19_01140	0.62	-1.5
1,175,925	-	MPMX19_01140	0.62	-2.2
1,175,927	+	MPMX19_01140	0.62	-2.4
1,175,927	+	MPMX19_01140	0.62	+0.5
1,175,927	+	MPMX19_01140	0.62	+0.4
1,175,927	+	MPMX19_01140	0.62	-1.5
1,175,927	+	MPMX19_01140	0.62	+1.2
1,175,927	+	MPMX19_01140	0.62	-0.3
1,175,927	+	MPMX19_01140	0.62	+0.4
1,175,927	+	MPMX19_01140	0.62	-0.8
1,175,928	-	MPMX19_01140	0.62	-1.9
1,175,928	-	MPMX19_01140	0.62	-0.0
1,175,928	-	MPMX19_01140	0.62	-0.0
1,175,928	-	MPMX19_01140	0.62	-0.8
1,175,928	-	MPMX19_01140	0.62	-1.0
1,175,928	-	MPMX19_01140	0.62	-1.7
1,176,840	+			-0.0
1,176,880	+			-0.6
1,176,880	+			-0.5
1,176,880	+			+0.8
1,176,880	+			+0.3
1,176,880	+			-0.1
1,176,880	+			-0.0
1,176,880	+			+1.5
1,176,880	+			+1.5
1,176,880	+			-1.0
1,176,880	+			-1.0
1,176,880	+			+1.0
1,176,881	-			-0.5
1,176,881	-			-0.6
1,176,881	-			-0.2
1,176,881	-			-1.9
1,176,881	-			+0.1
1,176,881	-			-2.0
1,176,881	-			+0.5
1,176,881	-			-1.3
1,176,881	-			-0.3
1,176,881	-			+1.2
1,176,881	-			-1.8
1,176,881	-			-0.3
1,176,881	-			-1.0
1,176,988	+			-0.8
1,176,988	+			-0.8
1,176,988	+			-0.1
1,177,226	+	MPMX19_01141	0.24	+0.1
1,177,226	+	MPMX19_01141	0.24	-0.7
1,177,226	+	MPMX19_01141	0.24	-0.0
1,177,227	-	MPMX19_01141	0.24	+1.5
1,177,227	-	MPMX19_01141	0.24	+0.5
1,177,227	-	MPMX19_01141	0.24	+1.1
1,177,227	-	MPMX19_01141	0.24	-0.5
1,177,227	-	MPMX19_01141	0.24	+0.5
1,177,227	-	MPMX19_01141	0.24	-1.0
1,177,227	-	MPMX19_01141	0.24	+0.1
1,177,658	+	MPMX19_01141	0.71	+0.6
1,177,658	+	MPMX19_01141	0.71	+0.5
1,177,658	+	MPMX19_01141	0.71	+1.3
1,177,658	+	MPMX19_01141	0.71	+1.5
1,177,658	+	MPMX19_01141	0.71	-0.5
1,177,658	+	MPMX19_01141	0.71	-1.0
1,177,658	+	MPMX19_01141	0.71	-0.3
1,177,658	+	MPMX19_01141	0.71	+0.5
1,177,658	+	MPMX19_01141	0.71	-0.5
1,177,658	+	MPMX19_01141	0.71	+0.2
1,177,658	+	MPMX19_01141	0.71	-0.6
1,177,658	+	MPMX19_01141	0.71	-1.8
1,177,659	-	MPMX19_01141	0.71	+0.7
1,177,659	-	MPMX19_01141	0.71	-0.6
1,177,659	-	MPMX19_01141	0.71	+0.5
1,177,659	-	MPMX19_01141	0.71	+0.1
1,177,659	-	MPMX19_01141	0.71	-0.5
1,177,659	-	MPMX19_01141	0.71	+1.4
1,177,659	-	MPMX19_01141	0.71	+0.7
1,177,659	-	MPMX19_01141	0.71	+0.9
1,177,659	-	MPMX19_01141	0.71	+1.5
1,177,659	-	MPMX19_01141	0.71	-0.8

Or see this region's nucleotide sequence