Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01083 and MPMX19_01084 overlap by 4 nucleotides MPMX19_01084 and MPMX19_01085 are separated by 89 nucleotides MPMX19_01085 and MPMX19_01086 are separated by 2 nucleotides MPMX19_01086 and MPMX19_01087 are separated by 204 nucleotides
MPMX19_01083: MPMX19_01083 - hypothetical protein, at 1,119,586 to 1,120,419
_01083
MPMX19_01084: MPMX19_01084 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 1,120,416 to 1,121,192
_01084
MPMX19_01085: MPMX19_01085 - hypothetical protein, at 1,121,282 to 1,121,842
_01085
MPMX19_01086: MPMX19_01086 - Blue light- and temperature-regulated antirepressor BluF, at 1,121,845 to 1,122,543
_01086
MPMX19_01087: MPMX19_01087 - Carbon monoxide dehydrogenase large chain, at 1,122,748 to 1,125,093
_01087
Position (kb) 1121
1122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1120.328 kb on + strand, within MPMX19_01083 at 1120.328 kb on + strand, within MPMX19_01083 at 1120.328 kb on + strand, within MPMX19_01083 at 1120.328 kb on + strand, within MPMX19_01083 at 1120.329 kb on - strand, within MPMX19_01083 at 1120.329 kb on - strand, within MPMX19_01083 at 1120.329 kb on - strand, within MPMX19_01083 at 1120.329 kb on - strand, within MPMX19_01083 at 1120.430 kb on - strand at 1120.469 kb on - strand at 1120.648 kb on + strand, within MPMX19_01084 at 1120.648 kb on + strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.801 kb on + strand, within MPMX19_01084 at 1120.801 kb on + strand, within MPMX19_01084 at 1120.801 kb on + strand, within MPMX19_01084 at 1120.802 kb on - strand, within MPMX19_01084 at 1120.802 kb on - strand, within MPMX19_01084 at 1120.825 kb on + strand, within MPMX19_01084 at 1120.825 kb on + strand, within MPMX19_01084 at 1120.825 kb on + strand, within MPMX19_01084 at 1121.110 kb on + strand, within MPMX19_01084 at 1121.110 kb on + strand, within MPMX19_01084 at 1121.111 kb on - strand, within MPMX19_01084 at 1121.111 kb on - strand, within MPMX19_01084 at 1121.111 kb on - strand, within MPMX19_01084 at 1121.205 kb on + strand at 1121.205 kb on + strand at 1121.205 kb on + strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.340 kb on + strand, within MPMX19_01085 at 1121.340 kb on + strand, within MPMX19_01085 at 1121.341 kb on - strand, within MPMX19_01085 at 1121.341 kb on - strand, within MPMX19_01085 at 1121.350 kb on + strand, within MPMX19_01085 at 1121.350 kb on + strand, within MPMX19_01085 at 1121.350 kb on + strand, within MPMX19_01085 at 1121.350 kb on + strand, within MPMX19_01085 at 1121.351 kb on - strand, within MPMX19_01085 at 1121.351 kb on - strand, within MPMX19_01085 at 1121.408 kb on + strand, within MPMX19_01085 at 1121.451 kb on - strand, within MPMX19_01085 at 1121.451 kb on - strand, within MPMX19_01085 at 1121.585 kb on + strand, within MPMX19_01085 at 1121.585 kb on + strand, within MPMX19_01085 at 1121.585 kb on + strand, within MPMX19_01085 at 1121.585 kb on + strand, within MPMX19_01085 at 1121.586 kb on - strand, within MPMX19_01085 at 1121.586 kb on - strand, within MPMX19_01085 at 1121.586 kb on - strand, within MPMX19_01085 at 1121.651 kb on + strand, within MPMX19_01085 at 1121.651 kb on + strand, within MPMX19_01085 at 1121.652 kb on - strand, within MPMX19_01085 at 1121.704 kb on + strand, within MPMX19_01085 at 1121.723 kb on + strand, within MPMX19_01085 at 1121.723 kb on + strand, within MPMX19_01085 at 1121.723 kb on + strand, within MPMX19_01085 at 1121.723 kb on + strand, within MPMX19_01085 at 1121.724 kb on - strand, within MPMX19_01085 at 1121.724 kb on - strand, within MPMX19_01085 at 1121.724 kb on - strand, within MPMX19_01085 at 1121.750 kb on + strand, within MPMX19_01085 at 1121.751 kb on - strand, within MPMX19_01085 at 1121.792 kb on + strand at 1121.792 kb on + strand at 1121.792 kb on + strand at 1121.792 kb on + strand at 1121.792 kb on + strand at 1121.793 kb on - strand at 1121.793 kb on - strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.812 kb on + strand at 1121.812 kb on + strand at 1121.812 kb on + strand at 1121.812 kb on + strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.854 kb on + strand at 1121.855 kb on - strand at 1121.855 kb on - strand at 1121.855 kb on - strand at 1121.855 kb on - strand at 1121.855 kb on - strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1122.179 kb on + strand, within MPMX19_01086 at 1122.179 kb on + strand, within MPMX19_01086 at 1122.179 kb on + strand, within MPMX19_01086 at 1122.179 kb on + strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.317 kb on + strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.318 kb on - strand, within MPMX19_01086 at 1122.420 kb on - strand, within MPMX19_01086 at 1122.628 kb on + strand at 1122.628 kb on + strand at 1122.628 kb on + strand at 1122.628 kb on + strand at 1122.628 kb on + strand at 1122.628 kb on + strand at 1122.629 kb on - strand at 1122.629 kb on - strand at 1122.629 kb on - strand at 1122.629 kb on - strand at 1122.629 kb on - strand at 1122.642 kb on + strand at 1122.642 kb on + strand at 1122.642 kb on + strand at 1122.642 kb on + strand at 1122.642 kb on + strand at 1122.642 kb on + strand at 1122.642 kb on + strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.643 kb on - strand at 1122.646 kb on + strand at 1122.706 kb on + strand at 1122.706 kb on + strand at 1122.707 kb on - strand at 1122.720 kb on - strand at 1122.730 kb on + strand at 1122.731 kb on - strand at 1122.749 kb on + strand at 1122.749 kb on + strand at 1122.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 1,120,328 + MPMX19_01083 0.89 -0.8 1,120,328 + MPMX19_01083 0.89 -1.2 1,120,328 + MPMX19_01083 0.89 +0.2 1,120,328 + MPMX19_01083 0.89 +1.3 1,120,329 - MPMX19_01083 0.89 +1.3 1,120,329 - MPMX19_01083 0.89 -0.3 1,120,329 - MPMX19_01083 0.89 -1.5 1,120,329 - MPMX19_01083 0.89 -0.0 1,120,430 - +0.4 1,120,469 - -0.9 1,120,648 + MPMX19_01084 0.30 -1.0 1,120,648 + MPMX19_01084 0.30 -1.6 1,120,649 - MPMX19_01084 0.30 -1.5 1,120,649 - MPMX19_01084 0.30 -1.1 1,120,649 - MPMX19_01084 0.30 -0.8 1,120,649 - MPMX19_01084 0.30 -2.0 1,120,649 - MPMX19_01084 0.30 -2.6 1,120,801 + MPMX19_01084 0.50 +0.0 1,120,801 + MPMX19_01084 0.50 -0.2 1,120,801 + MPMX19_01084 0.50 -1.0 1,120,802 - MPMX19_01084 0.50 -0.3 1,120,802 - MPMX19_01084 0.50 -1.9 1,120,825 + MPMX19_01084 0.53 -0.5 1,120,825 + MPMX19_01084 0.53 -0.9 1,120,825 + MPMX19_01084 0.53 -2.3 1,121,110 + MPMX19_01084 0.89 -1.6 1,121,110 + MPMX19_01084 0.89 -1.5 1,121,111 - MPMX19_01084 0.89 -1.5 1,121,111 - MPMX19_01084 0.89 +0.1 1,121,111 - MPMX19_01084 0.89 -0.3 1,121,205 + -0.0 1,121,205 + -1.8 1,121,205 + -0.9 1,121,206 - -1.0 1,121,206 - -0.3 1,121,206 - +1.8 1,121,206 - -0.8 1,121,206 - -1.0 1,121,206 - -0.8 1,121,206 - -0.3 1,121,206 - -0.8 1,121,210 + -1.9 1,121,210 + -0.0 1,121,210 + -0.8 1,121,210 + -1.8 1,121,210 + -1.4 1,121,210 + -2.0 1,121,210 + -0.1 1,121,210 + +0.5 1,121,210 + -0.0 1,121,210 + +0.5 1,121,210 + -2.5 1,121,210 + -1.5 1,121,210 + -0.7 1,121,210 + -0.0 1,121,210 + -0.5 1,121,211 - -0.9 1,121,211 - -1.9 1,121,211 - +0.4 1,121,211 - -0.5 1,121,211 - -2.0 1,121,211 - -0.9 1,121,211 - -0.6 1,121,211 - -0.0 1,121,211 - +0.7 1,121,211 - +0.1 1,121,211 - -0.4 1,121,211 - -0.9 1,121,211 - +0.1 1,121,211 - -0.6 1,121,211 - -1.3 1,121,225 + -1.3 1,121,225 + +0.3 1,121,225 + -0.2 1,121,225 + -2.2 1,121,225 + +0.0 1,121,225 + -1.3 1,121,226 - -1.0 1,121,226 - -1.9 1,121,226 - -0.8 1,121,226 - -1.0 1,121,226 - -1.8 1,121,226 - +0.1 1,121,226 - -0.2 1,121,226 - -1.2 1,121,226 - -0.5 1,121,226 - -1.5 1,121,226 - +0.3 1,121,226 - -1.4 1,121,226 - -1.6 1,121,226 - -1.5 1,121,226 - +0.5 1,121,226 - -1.6 1,121,340 + MPMX19_01085 0.10 -0.9 1,121,340 + MPMX19_01085 0.10 -0.5 1,121,341 - MPMX19_01085 0.11 -0.5 1,121,341 - MPMX19_01085 0.11 +1.1 1,121,350 + MPMX19_01085 0.12 -1.0 1,121,350 + MPMX19_01085 0.12 +0.2 1,121,350 + MPMX19_01085 0.12 -0.3 1,121,350 + MPMX19_01085 0.12 +0.7 1,121,351 - MPMX19_01085 0.12 -2.3 1,121,351 - MPMX19_01085 0.12 -0.8 1,121,408 + MPMX19_01085 0.22 -2.2 1,121,451 - MPMX19_01085 0.30 +0.1 1,121,451 - MPMX19_01085 0.30 -0.0 1,121,585 + MPMX19_01085 0.54 +0.3 1,121,585 + MPMX19_01085 0.54 -0.3 1,121,585 + MPMX19_01085 0.54 -1.3 1,121,585 + MPMX19_01085 0.54 -1.5 1,121,586 - MPMX19_01085 0.54 -0.5 1,121,586 - MPMX19_01085 0.54 -1.3 1,121,586 - MPMX19_01085 0.54 +0.1 1,121,651 + MPMX19_01085 0.66 +0.7 1,121,651 + MPMX19_01085 0.66 -1.6 1,121,652 - MPMX19_01085 0.66 -2.8 1,121,704 + MPMX19_01085 0.75 -1.5 1,121,723 + MPMX19_01085 0.79 -1.2 1,121,723 + MPMX19_01085 0.79 -0.5 1,121,723 + MPMX19_01085 0.79 -0.3 1,121,723 + MPMX19_01085 0.79 -1.5 1,121,724 - MPMX19_01085 0.79 -0.9 1,121,724 - MPMX19_01085 0.79 -0.9 1,121,724 - MPMX19_01085 0.79 -2.2 1,121,750 + MPMX19_01085 0.83 -0.9 1,121,751 - MPMX19_01085 0.84 -0.5 1,121,792 + +0.2 1,121,792 + -1.3 1,121,792 + +0.3 1,121,792 + -1.9 1,121,792 + -0.3 1,121,793 - -1.2 1,121,793 - -1.9 1,121,810 + -0.3 1,121,810 + +0.8 1,121,810 + -0.6 1,121,810 + -0.0 1,121,810 + -1.3 1,121,810 + -0.5 1,121,810 + -1.5 1,121,810 + -0.2 1,121,810 + -1.8 1,121,810 + -0.3 1,121,810 + -1.3 1,121,810 + -0.9 1,121,810 + +0.2 1,121,810 + -0.2 1,121,811 - +0.2 1,121,811 - -1.5 1,121,811 - -1.6 1,121,811 - -0.5 1,121,811 - -1.3 1,121,811 - -0.3 1,121,811 - -0.6 1,121,811 - +1.0 1,121,811 - -0.8 1,121,811 - +1.9 1,121,811 - -0.8 1,121,811 - -1.5 1,121,811 - -2.0 1,121,811 - -0.6 1,121,811 - +0.8 1,121,811 - +0.8 1,121,812 + +0.2 1,121,812 + +0.5 1,121,812 + +1.1 1,121,812 + +0.5 1,121,813 - -0.1 1,121,813 - -1.2 1,121,813 - -2.3 1,121,813 - -0.2 1,121,813 - -1.3 1,121,813 - -1.1 1,121,813 - -1.0 1,121,813 - -1.5 1,121,813 - -2.8 1,121,813 - +2.0 1,121,813 - -0.3 1,121,854 + -0.0 1,121,855 - -0.5 1,121,855 - -0.0 1,121,855 - -1.0 1,121,855 - +0.7 1,121,855 - -0.0 1,121,912 + -0.2 1,121,912 + +1.0 1,121,912 + +0.4 1,121,912 + +0.6 1,121,912 + +0.1 1,121,912 + -0.8 1,121,912 + -0.3 1,121,913 - -0.0 1,121,913 - -0.5 1,121,913 - -2.0 1,121,913 - +1.1 1,121,913 - -1.4 1,121,913 - +0.0 1,121,913 - +0.1 1,122,179 + MPMX19_01086 0.48 +0.1 1,122,179 + MPMX19_01086 0.48 -0.9 1,122,179 + MPMX19_01086 0.48 -0.8 1,122,179 + MPMX19_01086 0.48 -0.5 1,122,180 - MPMX19_01086 0.48 +0.3 1,122,180 - MPMX19_01086 0.48 -0.6 1,122,180 - MPMX19_01086 0.48 -1.3 1,122,180 - MPMX19_01086 0.48 -1.3 1,122,180 - MPMX19_01086 0.48 +1.0 1,122,180 - MPMX19_01086 0.48 +0.5 1,122,180 - MPMX19_01086 0.48 +0.1 1,122,180 - MPMX19_01086 0.48 -0.5 1,122,317 + MPMX19_01086 0.68 -0.8 1,122,317 + MPMX19_01086 0.68 +0.2 1,122,317 + MPMX19_01086 0.68 +0.4 1,122,317 + MPMX19_01086 0.68 -0.9 1,122,317 + MPMX19_01086 0.68 -1.8 1,122,317 + MPMX19_01086 0.68 -0.6 1,122,317 + MPMX19_01086 0.68 +0.2 1,122,317 + MPMX19_01086 0.68 +0.1 1,122,317 + MPMX19_01086 0.68 -1.0 1,122,317 + MPMX19_01086 0.68 -0.2 1,122,317 + MPMX19_01086 0.68 -2.0 1,122,317 + MPMX19_01086 0.68 -0.3 1,122,317 + MPMX19_01086 0.68 -0.9 1,122,317 + MPMX19_01086 0.68 -0.0 1,122,317 + MPMX19_01086 0.68 -1.6 1,122,317 + MPMX19_01086 0.68 +0.3 1,122,317 + MPMX19_01086 0.68 -0.7 1,122,317 + MPMX19_01086 0.68 -0.8 1,122,318 - MPMX19_01086 0.68 -0.2 1,122,318 - MPMX19_01086 0.68 -1.0 1,122,318 - MPMX19_01086 0.68 -1.8 1,122,318 - MPMX19_01086 0.68 -0.2 1,122,318 - MPMX19_01086 0.68 +0.5 1,122,318 - MPMX19_01086 0.68 -1.3 1,122,318 - MPMX19_01086 0.68 -1.3 1,122,318 - MPMX19_01086 0.68 +1.3 1,122,318 - MPMX19_01086 0.68 -0.1 1,122,318 - MPMX19_01086 0.68 +2.1 1,122,420 - MPMX19_01086 0.82 -0.8 1,122,628 + -0.2 1,122,628 + -0.0 1,122,628 + +0.9 1,122,628 + +0.5 1,122,628 + -1.0 1,122,628 + -2.4 1,122,629 - -0.8 1,122,629 - +0.3 1,122,629 - -0.8 1,122,629 - -0.8 1,122,629 - +0.4 1,122,642 + -1.0 1,122,642 + -1.8 1,122,642 + +0.5 1,122,642 + -1.0 1,122,642 + -0.0 1,122,642 + -2.3 1,122,642 + -0.1 1,122,643 - -0.0 1,122,643 - -1.8 1,122,643 - +0.2 1,122,643 - +0.1 1,122,643 - -1.5 1,122,643 - +1.4 1,122,643 - +1.2 1,122,643 - -0.6 1,122,643 - +0.2 1,122,643 - -0.3 1,122,643 - -0.4 1,122,643 - -1.2 1,122,643 - -1.9 1,122,643 - +0.2 1,122,646 + -0.1 1,122,706 + +0.5 1,122,706 + +3.9 1,122,707 - -0.5 1,122,720 - +0.1 1,122,730 + -0.5 1,122,731 - -1.3 1,122,749 + -0.8 1,122,749 + -0.4 1,122,749 + -0.5
Or see this region's nucleotide sequence