Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00893 and MPMX19_00894 are separated by 41 nucleotides MPMX19_00894 and MPMX19_00895 are separated by 243 nucleotides MPMX19_00895 and MPMX19_00896 are separated by 117 nucleotides MPMX19_00896 and MPMX19_00897 are separated by 22 nucleotides
MPMX19_00893: MPMX19_00893 - Anthranilate synthase component 1, at 927,259 to 928,770
_00893
MPMX19_00894: MPMX19_00894 - Peptidyl-prolyl cis-trans isomerase D, at 928,812 to 930,692
_00894
MPMX19_00895: MPMX19_00895 - hypothetical protein, at 930,936 to 931,115
_00895
MPMX19_00896: MPMX19_00896 - hypothetical protein, at 931,233 to 931,571
_00896
MPMX19_00897: MPMX19_00897 - hypothetical protein, at 931,594 to 931,812
_00897
Position (kb) 928
929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.829 kb on - strand, within MPMX19_00893 at 927.829 kb on - strand, within MPMX19_00893 at 927.957 kb on - strand, within MPMX19_00893 at 927.957 kb on - strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.196 kb on + strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.379 kb on + strand, within MPMX19_00893 at 928.379 kb on + strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.730 kb on + strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.752 kb on + strand at 928.864 kb on + strand at 928.865 kb on - strand at 929.926 kb on + strand, within MPMX19_00894 at 930.148 kb on + strand, within MPMX19_00894 at 930.244 kb on + strand, within MPMX19_00894 at 930.245 kb on - strand, within MPMX19_00894 at 930.594 kb on + strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.705 kb on + strand at 930.706 kb on - strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.750 kb on - strand at 930.750 kb on - strand at 930.890 kb on - strand at 930.890 kb on - strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.938 kb on - strand at 930.938 kb on - strand at 931.140 kb on + strand at 931.140 kb on + strand at 931.141 kb on - strand at 931.141 kb on - strand at 931.141 kb on - strand at 931.141 kb on - strand at 931.178 kb on + strand at 931.178 kb on + strand at 931.178 kb on + strand at 931.179 kb on - strand at 931.179 kb on - strand at 931.184 kb on + strand at 931.184 kb on + strand at 931.184 kb on + strand at 931.184 kb on + strand at 931.184 kb on + strand at 931.185 kb on - strand at 931.185 kb on - strand at 931.185 kb on - strand at 931.185 kb on - strand at 931.487 kb on + strand, within MPMX19_00896 at 931.487 kb on + strand, within MPMX19_00896
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 927,829 - MPMX19_00893 0.38 -1.2 927,829 - MPMX19_00893 0.38 -0.2 927,957 - MPMX19_00893 0.46 +0.5 927,957 - MPMX19_00893 0.46 -0.5 928,037 + MPMX19_00893 0.51 -1.5 928,037 + MPMX19_00893 0.51 -1.9 928,037 + MPMX19_00893 0.51 +0.6 928,037 + MPMX19_00893 0.51 -1.5 928,037 + MPMX19_00893 0.51 +0.8 928,037 + MPMX19_00893 0.51 +0.6 928,037 + MPMX19_00893 0.51 -0.6 928,037 + MPMX19_00893 0.51 -1.2 928,037 + MPMX19_00893 0.51 +0.0 928,037 + MPMX19_00893 0.51 +0.5 928,037 + MPMX19_00893 0.51 +0.1 928,037 + MPMX19_00893 0.51 -1.0 928,037 + MPMX19_00893 0.51 -1.9 928,037 + MPMX19_00893 0.51 -0.2 928,037 + MPMX19_00893 0.51 -0.5 928,038 - MPMX19_00893 0.52 -0.0 928,038 - MPMX19_00893 0.52 -0.7 928,038 - MPMX19_00893 0.52 -0.0 928,038 - MPMX19_00893 0.52 +0.6 928,038 - MPMX19_00893 0.52 +0.0 928,038 - MPMX19_00893 0.52 +0.1 928,038 - MPMX19_00893 0.52 -1.2 928,038 - MPMX19_00893 0.52 -0.0 928,038 - MPMX19_00893 0.52 -0.4 928,038 - MPMX19_00893 0.52 -2.5 928,038 - MPMX19_00893 0.52 +1.1 928,038 - MPMX19_00893 0.52 -0.8 928,038 - MPMX19_00893 0.52 +0.5 928,067 + MPMX19_00893 0.53 -0.5 928,067 + MPMX19_00893 0.53 -0.3 928,067 + MPMX19_00893 0.53 +0.5 928,067 + MPMX19_00893 0.53 -1.7 928,068 - MPMX19_00893 0.54 -0.8 928,068 - MPMX19_00893 0.54 -0.5 928,068 - MPMX19_00893 0.54 +0.5 928,068 - MPMX19_00893 0.54 -0.1 928,068 - MPMX19_00893 0.54 +0.2 928,068 - MPMX19_00893 0.54 -1.2 928,196 + MPMX19_00893 0.62 -0.7 928,197 - MPMX19_00893 0.62 -0.7 928,197 - MPMX19_00893 0.62 -0.0 928,197 - MPMX19_00893 0.62 -1.2 928,370 + MPMX19_00893 0.73 -1.0 928,370 + MPMX19_00893 0.73 -0.2 928,370 + MPMX19_00893 0.73 -0.2 928,370 + MPMX19_00893 0.73 -1.5 928,370 + MPMX19_00893 0.73 -0.1 928,370 + MPMX19_00893 0.73 -1.6 928,370 + MPMX19_00893 0.73 -1.2 928,370 + MPMX19_00893 0.73 -2.0 928,370 + MPMX19_00893 0.73 -2.0 928,370 + MPMX19_00893 0.73 +0.2 928,370 + MPMX19_00893 0.73 -1.1 928,370 + MPMX19_00893 0.73 -1.5 928,371 - MPMX19_00893 0.74 -0.5 928,371 - MPMX19_00893 0.74 -1.0 928,371 - MPMX19_00893 0.74 -1.0 928,371 - MPMX19_00893 0.74 -1.5 928,371 - MPMX19_00893 0.74 -0.6 928,371 - MPMX19_00893 0.74 -0.5 928,371 - MPMX19_00893 0.74 +0.1 928,371 - MPMX19_00893 0.74 -0.5 928,371 - MPMX19_00893 0.74 -0.5 928,379 + MPMX19_00893 0.74 +0.5 928,379 + MPMX19_00893 0.74 -0.1 928,380 - MPMX19_00893 0.74 -1.4 928,380 - MPMX19_00893 0.74 +0.8 928,380 - MPMX19_00893 0.74 -0.9 928,380 - MPMX19_00893 0.74 -0.5 928,380 - MPMX19_00893 0.74 +0.7 928,380 - MPMX19_00893 0.74 +0.2 928,661 + +0.8 928,661 + +1.0 928,661 + -0.6 928,661 + -0.4 928,661 + -1.8 928,661 + -0.5 928,661 + +0.3 928,661 + -0.3 928,661 + -2.0 928,661 - +0.5 928,662 - -1.2 928,662 - +0.2 928,662 - -0.5 928,662 - -0.6 928,662 - +0.4 928,662 - +0.2 928,662 - -0.0 928,662 - -0.3 928,730 + -1.3 928,731 - +1.2 928,731 - -0.5 928,731 - -0.7 928,731 - -1.7 928,752 + +0.5 928,864 + -0.1 928,865 - -1.2 929,926 + MPMX19_00894 0.59 -1.0 930,148 + MPMX19_00894 0.71 -0.5 930,244 + MPMX19_00894 0.76 -1.4 930,245 - MPMX19_00894 0.76 +0.4 930,594 + -1.2 930,595 - +0.0 930,595 - -0.2 930,595 - -2.0 930,595 - -1.8 930,595 - -0.9 930,595 - -1.8 930,705 + +0.7 930,706 - +0.8 930,745 + -2.3 930,745 + -1.8 930,745 + -0.7 930,745 + -1.5 930,745 + -1.5 930,745 + -0.0 930,745 + -0.5 930,745 + -1.5 930,745 + -0.7 930,745 + -0.1 930,745 + -0.5 930,745 + -0.7 930,746 - +1.1 930,746 - -0.5 930,746 - -0.2 930,746 - +0.1 930,746 - -0.4 930,746 - -1.3 930,746 - -2.1 930,746 - -0.4 930,746 - +1.8 930,746 - -1.2 930,746 - -0.6 930,746 - +0.8 930,746 - -0.8 930,746 - -2.0 930,746 - -0.9 930,746 - +0.5 930,746 - +1.1 930,746 - +0.4 930,746 - -0.3 930,746 - +0.2 930,746 - +0.8 930,746 - +1.5 930,746 - -0.5 930,746 - -0.6 930,746 - -0.7 930,746 - -0.5 930,746 - -0.6 930,746 - -1.0 930,746 - -0.7 930,746 - -1.0 930,746 - -0.9 930,746 - +0.3 930,746 - -1.1 930,746 - +0.1 930,746 - +1.2 930,750 - +0.8 930,750 - +0.7 930,890 - -0.8 930,890 - +0.5 930,937 + -1.3 930,937 + -2.9 930,937 + -0.4 930,938 - +0.4 930,938 - -0.9 931,140 + +1.0 931,140 + -0.9 931,141 - -1.0 931,141 - -0.8 931,141 - -0.6 931,141 - -0.7 931,178 + -0.5 931,178 + -1.6 931,178 + +1.8 931,179 - +0.9 931,179 - -0.2 931,184 + -0.8 931,184 + -0.2 931,184 + +0.1 931,184 + -1.3 931,184 + -0.0 931,185 - +0.0 931,185 - -0.8 931,185 - +0.3 931,185 - -0.7 931,487 + MPMX19_00896 0.75 -0.0 931,487 + MPMX19_00896 0.75 +0.5
Or see this region's nucleotide sequence