Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00887

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00886 and MPMX19_00887 overlap by 4 nucleotidesMPMX19_00887 and MPMX19_00888 are separated by 1 nucleotidesMPMX19_00888 and MPMX19_00889 are separated by 21 nucleotides MPMX19_00886: MPMX19_00886 - Protoheme IX farnesyltransferase, at 921,494 to 922,405 _00886 MPMX19_00887: MPMX19_00887 - hypothetical protein, at 922,402 to 922,587 _00887 MPMX19_00888: MPMX19_00888 - Cytochrome c oxidase assembly protein CtaG, at 922,589 to 923,230 _00888 MPMX19_00889: MPMX19_00889 - Cytochrome c oxidase subunit 3, at 923,252 to 924,127 _00889 Position (kb) 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1at 921.475 kb on + strandat 921.475 kb on + strandat 921.493 kb on + strandat 921.493 kb on + strandat 921.493 kb on + strandat 921.493 kb on + strandat 921.493 kb on + strandat 921.493 kb on + strandat 922.384 kb on + strandat 922.384 kb on + strandat 922.384 kb on + strandat 922.549 kb on + strand, within MPMX19_00887at 922.549 kb on + strand, within MPMX19_00887at 922.549 kb on + strand, within MPMX19_00887at 922.549 kb on + strand, within MPMX19_00887at 922.549 kb on + strand, within MPMX19_00887at 922.550 kb on - strand, within MPMX19_00887at 922.550 kb on - strand, within MPMX19_00887at 922.586 kb on + strandat 922.588 kb on + strandat 922.588 kb on + strandat 922.588 kb on + strandat 922.588 kb on + strandat 922.589 kb on - strandat 922.589 kb on - strandat 922.589 kb on - strandat 922.589 kb on - strandat 922.589 kb on - strandat 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.677 kb on - strand, within MPMX19_00888at 922.677 kb on - strand, within MPMX19_00888at 922.677 kb on - strand, within MPMX19_00888at 922.694 kb on + strand, within MPMX19_00888at 922.694 kb on + strand, within MPMX19_00888at 922.695 kb on - strand, within MPMX19_00888at 922.695 kb on - strand, within MPMX19_00888at 922.883 kb on + strand, within MPMX19_00888at 922.931 kb on + strand, within MPMX19_00888at 922.931 kb on + strand, within MPMX19_00888at 922.932 kb on - strand, within MPMX19_00888at 922.932 kb on - strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.962 kb on - strand, within MPMX19_00888at 922.962 kb on - strand, within MPMX19_00888at 922.962 kb on - strand, within MPMX19_00888at 922.962 kb on - strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.236 kb on - strandat 923.242 kb on + strandat 923.243 kb on - strandat 923.243 kb on - strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.301 kb on - strandat 923.301 kb on - strandat 923.301 kb on - strandat 923.330 kb on + strandat 923.330 kb on + strandat 923.330 kb on + strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.550 kb on - strand, within MPMX19_00889

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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921,475 + +1.0
921,475 + -2.1
921,493 + -0.0
921,493 + -0.2
921,493 + -1.0
921,493 + +0.3
921,493 + +1.0
921,493 + -0.6
922,384 + -1.8
922,384 + -2.8
922,384 + -0.0
922,549 + MPMX19_00887 0.79 +0.4
922,549 + MPMX19_00887 0.79 +0.5
922,549 + MPMX19_00887 0.79 -0.9
922,549 + MPMX19_00887 0.79 +1.1
922,549 + MPMX19_00887 0.79 +0.4
922,550 - MPMX19_00887 0.80 -0.8
922,550 - MPMX19_00887 0.80 -1.8
922,586 + +0.2
922,588 + -0.8
922,588 + -0.2
922,588 + +1.1
922,588 + -1.3
922,589 - -0.3
922,589 - +1.1
922,589 - -0.1
922,589 - +0.1
922,589 - -0.3
922,676 + MPMX19_00888 0.14 +0.2
922,676 + MPMX19_00888 0.14 +1.2
922,676 + MPMX19_00888 0.14 -0.9
922,676 + MPMX19_00888 0.14 +0.3
922,676 + MPMX19_00888 0.14 -0.0
922,676 + MPMX19_00888 0.14 -1.6
922,677 - MPMX19_00888 0.14 -1.6
922,677 - MPMX19_00888 0.14 -0.2
922,677 - MPMX19_00888 0.14 -0.8
922,694 + MPMX19_00888 0.16 +0.2
922,694 + MPMX19_00888 0.16 -0.5
922,695 - MPMX19_00888 0.17 -0.5
922,695 - MPMX19_00888 0.17 -1.9
922,883 + MPMX19_00888 0.46 -0.5
922,931 + MPMX19_00888 0.53 -0.4
922,931 + MPMX19_00888 0.53 -0.2
922,932 - MPMX19_00888 0.53 -0.3
922,932 - MPMX19_00888 0.53 +0.5
922,961 + MPMX19_00888 0.58 -2.2
922,961 + MPMX19_00888 0.58 -1.5
922,961 + MPMX19_00888 0.58 +0.2
922,961 + MPMX19_00888 0.58 -0.4
922,961 + MPMX19_00888 0.58 -0.5
922,962 - MPMX19_00888 0.58 +0.2
922,962 - MPMX19_00888 0.58 -1.5
922,962 - MPMX19_00888 0.58 +0.4
922,962 - MPMX19_00888 0.58 -0.3
923,105 + MPMX19_00888 0.80 -0.7
923,105 + MPMX19_00888 0.80 +0.8
923,105 + MPMX19_00888 0.80 -0.1
923,105 + MPMX19_00888 0.80 -0.5
923,105 + MPMX19_00888 0.80 -0.7
923,105 + MPMX19_00888 0.80 -0.6
923,105 + MPMX19_00888 0.80 -1.2
923,105 + MPMX19_00888 0.80 +0.0
923,105 + MPMX19_00888 0.80 -1.3
923,105 + MPMX19_00888 0.80 -2.3
923,105 + MPMX19_00888 0.80 -1.5
923,105 + MPMX19_00888 0.80 -1.8
923,106 - MPMX19_00888 0.81 -0.8
923,106 - MPMX19_00888 0.81 +0.0
923,106 - MPMX19_00888 0.81 -0.5
923,106 - MPMX19_00888 0.81 -0.5
923,106 - MPMX19_00888 0.81 +1.5
923,106 - MPMX19_00888 0.81 -0.4
923,106 - MPMX19_00888 0.81 -0.4
923,235 + +0.0
923,235 + -0.9
923,235 + -1.3
923,235 + -0.9
923,235 + -0.2
923,236 - -0.7
923,242 + -0.0
923,243 - +0.5
923,243 - -0.0
923,300 + +0.6
923,300 + -1.9
923,300 + +0.8
923,300 + -1.2
923,301 - -1.1
923,301 - +0.9
923,301 - -1.0
923,330 + -3.2
923,330 + +0.9
923,330 + -0.0
923,331 - -0.6
923,331 - -0.7
923,331 - +1.1
923,331 - -2.4
923,550 - MPMX19_00889 0.34 -0.4

Or see this region's nucleotide sequence