Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00849 and MPMX19_00850 are separated by 362 nucleotides MPMX19_00850 and MPMX19_00851 are separated by 294 nucleotides MPMX19_00851 and MPMX19_00852 are separated by 4 nucleotides MPMX19_00852 and MPMX19_00853 overlap by 4 nucleotides
MPMX19_00849: MPMX19_00849 - hypothetical protein, at 880,872 to 881,894
_00849
MPMX19_00850: MPMX19_00850 - hypothetical protein, at 882,257 to 882,385
_00850
MPMX19_00851: MPMX19_00851 - hypothetical protein, at 882,680 to 883,387
_00851
MPMX19_00852: MPMX19_00852 - hypothetical protein, at 883,392 to 884,246
_00852
MPMX19_00853: MPMX19_00853 - hypothetical protein, at 884,243 to 884,974
_00853
Position (kb) 882
883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 881.737 kb on + strand, within MPMX19_00849 at 881.738 kb on - strand, within MPMX19_00849 at 881.738 kb on - strand, within MPMX19_00849 at 881.738 kb on - strand, within MPMX19_00849 at 881.738 kb on - strand, within MPMX19_00849 at 881.982 kb on + strand at 881.982 kb on + strand at 881.982 kb on + strand at 881.983 kb on - strand at 881.983 kb on - strand at 881.983 kb on - strand at 881.983 kb on - strand at 881.983 kb on - strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.184 kb on - strand at 882.184 kb on - strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.489 kb on - strand at 882.498 kb on + strand at 882.498 kb on + strand at 882.498 kb on + strand at 882.498 kb on + strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.512 kb on + strand at 882.513 kb on - strand at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 883.094 kb on + strand, within MPMX19_00851 at 883.094 kb on + strand, within MPMX19_00851 at 883.094 kb on + strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.515 kb on - strand, within MPMX19_00852 at 884.122 kb on + strand, within MPMX19_00852 at 884.122 kb on + strand, within MPMX19_00852 at 884.122 kb on + strand, within MPMX19_00852 at 884.123 kb on - strand, within MPMX19_00852 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 881,737 + MPMX19_00849 0.85 +1.0 881,738 - MPMX19_00849 0.85 -1.0 881,738 - MPMX19_00849 0.85 -0.6 881,738 - MPMX19_00849 0.85 -0.0 881,738 - MPMX19_00849 0.85 +1.6 881,982 + -0.4 881,982 + -1.4 881,982 + +0.3 881,983 - +0.4 881,983 - -1.8 881,983 - +0.4 881,983 - +1.3 881,983 - -1.5 881,989 + -0.0 881,989 + -1.0 881,989 + -0.6 881,989 + +0.6 881,989 + -2.0 881,989 + -0.4 881,989 + -0.6 881,989 + +0.6 881,989 + +1.0 881,989 + -0.0 881,989 + +0.8 881,990 - +0.3 881,990 - -0.4 881,990 - -0.6 881,990 - +0.3 881,990 - -1.6 881,990 - -0.8 881,990 - -2.0 881,990 - -0.7 881,990 - +0.3 881,990 - -1.4 881,990 - -0.5 881,990 - -1.2 881,990 - +0.6 881,990 - -1.2 881,990 - +0.4 881,990 - +0.4 881,990 - -0.5 881,990 - +0.2 881,990 - +0.1 881,990 - -0.3 881,990 - -0.1 881,990 - +0.4 881,996 + -2.2 881,996 + -1.5 881,996 + -1.2 881,996 + -1.4 881,996 + -0.3 881,996 + +0.6 881,996 + +1.0 881,996 + -1.0 881,996 + +1.0 881,996 + -1.8 881,997 - -0.0 881,997 - +0.2 881,997 - +0.5 881,997 - +1.0 881,997 - -2.1 881,997 - +1.1 881,997 - -0.3 881,997 - -1.7 881,997 - +0.2 881,997 - -0.4 881,997 - +0.6 881,997 - -2.0 882,183 + -0.4 882,183 + -0.6 882,183 + +0.1 882,183 + -1.0 882,183 + -0.4 882,183 + -0.1 882,183 + -2.1 882,184 - +0.3 882,184 - -1.5 882,230 + +0.4 882,230 + -1.1 882,230 + -0.4 882,230 + -0.1 882,230 + +0.1 882,230 + +1.3 882,230 + -1.2 882,230 + -0.7 882,230 + -0.1 882,230 + +1.2 882,230 + -0.8 882,230 + -0.8 882,230 + -0.0 882,230 + -0.4 882,230 + -3.2 882,230 + +0.4 882,230 + +0.1 882,231 - -0.1 882,231 - +0.6 882,231 - +0.2 882,231 - -0.2 882,231 - -0.2 882,231 - -1.4 882,231 - -0.3 882,231 - -0.4 882,231 - +1.1 882,231 - -0.2 882,231 - +1.1 882,231 - +0.1 882,231 - -0.2 882,231 - -0.5 882,489 - +1.0 882,498 + -1.0 882,498 + -1.5 882,498 + +0.2 882,498 + -1.8 882,499 - +0.5 882,499 - +0.2 882,499 - -0.4 882,499 - -0.4 882,499 - -0.9 882,499 - -0.8 882,499 - +0.6 882,512 + -1.9 882,513 - +0.1 882,851 + MPMX19_00851 0.24 -1.1 882,851 + MPMX19_00851 0.24 -0.8 882,851 + MPMX19_00851 0.24 -1.0 882,851 + MPMX19_00851 0.24 -0.2 882,851 + MPMX19_00851 0.24 -0.0 882,851 + MPMX19_00851 0.24 -1.0 882,851 + MPMX19_00851 0.24 -0.1 882,851 + MPMX19_00851 0.24 -0.9 882,851 + MPMX19_00851 0.24 -0.2 882,851 + MPMX19_00851 0.24 +0.9 882,851 + MPMX19_00851 0.24 -0.8 882,851 + MPMX19_00851 0.24 -0.9 882,851 + MPMX19_00851 0.24 -1.0 882,851 + MPMX19_00851 0.24 +0.2 882,851 + MPMX19_00851 0.24 +0.1 882,852 - MPMX19_00851 0.24 +0.7 882,852 - MPMX19_00851 0.24 +0.5 882,852 - MPMX19_00851 0.24 +1.0 882,852 - MPMX19_00851 0.24 +0.3 882,852 - MPMX19_00851 0.24 +0.2 882,852 - MPMX19_00851 0.24 -1.2 882,878 + MPMX19_00851 0.28 +0.8 882,878 + MPMX19_00851 0.28 -0.4 882,878 + MPMX19_00851 0.28 -0.6 882,878 + MPMX19_00851 0.28 -0.8 882,878 + MPMX19_00851 0.28 -0.9 882,878 + MPMX19_00851 0.28 +0.3 882,878 + MPMX19_00851 0.28 +0.6 882,878 + MPMX19_00851 0.28 +2.0 882,878 + MPMX19_00851 0.28 -0.4 882,878 + MPMX19_00851 0.28 +0.4 882,879 - MPMX19_00851 0.28 -0.7 882,879 - MPMX19_00851 0.28 -0.9 882,879 - MPMX19_00851 0.28 -1.0 882,879 - MPMX19_00851 0.28 +1.0 882,879 - MPMX19_00851 0.28 -1.4 882,879 - MPMX19_00851 0.28 +0.6 882,879 - MPMX19_00851 0.28 -0.6 882,879 - MPMX19_00851 0.28 -1.1 882,879 - MPMX19_00851 0.28 -0.0 882,879 - MPMX19_00851 0.28 -1.4 883,094 + MPMX19_00851 0.58 +0.5 883,094 + MPMX19_00851 0.58 -0.8 883,094 + MPMX19_00851 0.58 -0.3 883,095 - MPMX19_00851 0.59 +0.7 883,095 - MPMX19_00851 0.59 -0.8 883,095 - MPMX19_00851 0.59 +1.3 883,095 - MPMX19_00851 0.59 -0.0 883,095 - MPMX19_00851 0.59 -0.3 883,095 - MPMX19_00851 0.59 +1.3 883,515 - MPMX19_00852 0.14 -0.4 884,122 + MPMX19_00852 0.85 +0.2 884,122 + MPMX19_00852 0.85 +0.5 884,122 + MPMX19_00852 0.85 +0.0 884,123 - MPMX19_00852 0.85 -0.3 884,344 + MPMX19_00853 0.14 -1.7 884,344 + MPMX19_00853 0.14 +0.1 884,344 + MPMX19_00853 0.14 -0.8 884,344 + MPMX19_00853 0.14 +0.1 884,344 + MPMX19_00853 0.14 +1.4 884,344 + MPMX19_00853 0.14 +0.8 884,344 + MPMX19_00853 0.14 -2.0 884,344 + MPMX19_00853 0.14 -0.4 884,344 + MPMX19_00853 0.14 -0.7 884,344 + MPMX19_00853 0.14 -1.6 884,344 + MPMX19_00853 0.14 +0.3 884,344 + MPMX19_00853 0.14 -0.3 884,344 + MPMX19_00853 0.14 -0.1 884,344 + MPMX19_00853 0.14 -1.8 884,344 + MPMX19_00853 0.14 -0.4 884,344 + MPMX19_00853 0.14 -1.0 884,344 + MPMX19_00853 0.14 -1.9 884,344 + MPMX19_00853 0.14 -0.3 884,345 - MPMX19_00853 0.14 +0.9 884,345 - MPMX19_00853 0.14 +0.8 884,345 - MPMX19_00853 0.14 -1.4 884,345 - MPMX19_00853 0.14 +0.1 884,345 - MPMX19_00853 0.14 -0.8 884,345 - MPMX19_00853 0.14 -0.1 884,345 - MPMX19_00853 0.14 +1.2 884,345 - MPMX19_00853 0.14 +0.4 884,345 - MPMX19_00853 0.14 -1.9 884,345 - MPMX19_00853 0.14 +0.1 884,345 - MPMX19_00853 0.14 +0.2 884,345 - MPMX19_00853 0.14 -0.2 884,345 - MPMX19_00853 0.14 +0.2 884,345 - MPMX19_00853 0.14 -0.2 884,345 - MPMX19_00853 0.14 -0.2 884,345 - MPMX19_00853 0.14 -0.5 884,345 - MPMX19_00853 0.14 -0.0 884,345 - MPMX19_00853 0.14 +0.7 884,345 - MPMX19_00853 0.14 +0.6 884,345 - MPMX19_00853 0.14 +0.1 884,345 - MPMX19_00853 0.14 +1.4 884,345 - MPMX19_00853 0.14 -0.4 884,345 - MPMX19_00853 0.14 -0.0 884,345 - MPMX19_00853 0.14 +0.5 884,345 - MPMX19_00853 0.14 -0.7 884,345 - MPMX19_00853 0.14 -0.6 884,345 - MPMX19_00853 0.14 -0.9 884,369 + MPMX19_00853 0.17 -0.4 884,369 + MPMX19_00853 0.17 -0.4 884,369 + MPMX19_00853 0.17 -1.0 884,369 + MPMX19_00853 0.17 -0.8 884,369 + MPMX19_00853 0.17 +0.8 884,369 + MPMX19_00853 0.17 -0.8 884,369 + MPMX19_00853 0.17 -0.0 884,369 + MPMX19_00853 0.17 -1.5 884,369 + MPMX19_00853 0.17 +0.4 884,369 + MPMX19_00853 0.17 +0.1 884,369 + MPMX19_00853 0.17 -0.1 884,370 - MPMX19_00853 0.17 -0.6 884,370 - MPMX19_00853 0.17 -0.4 884,370 - MPMX19_00853 0.17 +0.1 884,370 - MPMX19_00853 0.17 +0.6 884,370 - MPMX19_00853 0.17 -0.5 884,370 - MPMX19_00853 0.17 -0.8 884,370 - MPMX19_00853 0.17 -0.8 884,370 - MPMX19_00853 0.17 -0.5 884,370 - MPMX19_00853 0.17 -0.1
Or see this region's nucleotide sequence