Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00835 and MPMX19_00836 are separated by 90 nucleotides MPMX19_00836 and MPMX19_00837 are separated by 266 nucleotides MPMX19_00837 and MPMX19_00838 are separated by 154 nucleotides
MPMX19_00835: MPMX19_00835 - D-erythronate 4-phosphate dehydrogenase, at 867,371 to 868,399
_00835
MPMX19_00836: MPMX19_00836 - hypothetical protein, at 868,490 to 869,131
_00836
MPMX19_00837: MPMX19_00837 - DNA-directed RNA polymerase subunit omega, at 869,398 to 869,832
_00837
MPMX19_00838: MPMX19_00838 - GTP pyrophosphokinase rsh, at 869,987 to 872,146
_00838
Position (kb) 869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 868.398 kb on - strand at 868.398 kb on - strand at 868.398 kb on - strand at 868.408 kb on + strand at 868.409 kb on - strand at 868.409 kb on - strand at 868.409 kb on - strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.876 kb on - strand, within MPMX19_00836 at 868.876 kb on - strand, within MPMX19_00836 at 868.876 kb on - strand, within MPMX19_00836 at 868.876 kb on - strand, within MPMX19_00836 at 868.882 kb on + strand, within MPMX19_00836 at 868.884 kb on + strand, within MPMX19_00836 at 868.884 kb on + strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.921 kb on - strand, within MPMX19_00836 at 868.921 kb on - strand, within MPMX19_00836 at 868.921 kb on - strand, within MPMX19_00836 at 868.921 kb on - strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.948 kb on - strand, within MPMX19_00836 at 868.948 kb on - strand, within MPMX19_00836 at 868.948 kb on - strand, within MPMX19_00836 at 868.948 kb on - strand, within MPMX19_00836 at 868.950 kb on + strand, within MPMX19_00836 at 868.950 kb on + strand, within MPMX19_00836 at 868.950 kb on + strand, within MPMX19_00836 at 868.950 kb on + strand, within MPMX19_00836 at 868.951 kb on - strand, within MPMX19_00836 at 868.951 kb on - strand, within MPMX19_00836 at 868.951 kb on - strand, within MPMX19_00836 at 868.951 kb on - strand, within MPMX19_00836 at 869.004 kb on + strand, within MPMX19_00836 at 869.167 kb on + strand at 869.168 kb on - strand at 869.209 kb on + strand at 869.209 kb on + strand at 869.210 kb on - strand at 869.214 kb on + strand at 869.214 kb on + strand at 869.214 kb on + strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.249 kb on + strand at 869.249 kb on + strand at 869.249 kb on + strand at 869.250 kb on - strand at 869.250 kb on - strand at 869.250 kb on - strand at 869.277 kb on + strand at 869.358 kb on + strand at 869.358 kb on + strand at 869.358 kb on + strand at 869.358 kb on + strand at 869.365 kb on + strand at 869.999 kb on + strand at 870.026 kb on + strand at 870.026 kb on + strand at 870.026 kb on + strand at 870.026 kb on + strand at 870.026 kb on + strand at 870.027 kb on - strand at 870.119 kb on + strand at 870.485 kb on + strand, within MPMX19_00838 at 870.486 kb on - strand, within MPMX19_00838 at 870.812 kb on + strand, within MPMX19_00838
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 868,398 - +1.7 868,398 - -2.0 868,398 - -1.4 868,408 + -0.6 868,409 - -0.8 868,409 - +1.7 868,409 - -0.6 868,512 + -0.3 868,512 + -0.3 868,512 + -0.3 868,512 + -0.5 868,512 + +0.2 868,512 + -0.8 868,512 + -0.6 868,512 + -0.6 868,512 + -1.0 868,512 + -2.4 868,512 + -1.4 868,512 + +0.1 868,512 + +0.4 868,512 + +0.7 868,512 + -0.0 868,512 + -0.3 868,512 + -0.7 868,512 + +0.1 868,512 + -0.6 868,512 + -1.2 868,513 - -0.8 868,513 - -0.8 868,513 - +0.8 868,513 - -1.0 868,513 - +0.4 868,513 - -1.3 868,513 - +0.6 868,513 - -0.2 868,513 - -0.8 868,513 - -0.2 868,513 - -0.2 868,513 - +0.9 868,513 - +0.4 868,513 - -0.2 868,513 - +0.8 868,513 - -0.6 868,799 + MPMX19_00836 0.48 +1.6 868,799 + MPMX19_00836 0.48 -0.4 868,799 + MPMX19_00836 0.48 -0.2 868,799 + MPMX19_00836 0.48 -0.8 868,799 + MPMX19_00836 0.48 -0.8 868,799 + MPMX19_00836 0.48 -0.9 868,799 + MPMX19_00836 0.48 -0.4 868,799 + MPMX19_00836 0.48 -2.3 868,799 + MPMX19_00836 0.48 +0.2 868,799 + MPMX19_00836 0.48 -1.4 868,799 + MPMX19_00836 0.48 -1.8 868,799 + MPMX19_00836 0.48 -1.0 868,800 - MPMX19_00836 0.48 -0.9 868,800 - MPMX19_00836 0.48 -1.0 868,800 - MPMX19_00836 0.48 +1.1 868,800 - MPMX19_00836 0.48 -2.1 868,800 - MPMX19_00836 0.48 -0.9 868,800 - MPMX19_00836 0.48 -0.1 868,800 - MPMX19_00836 0.48 +0.9 868,800 - MPMX19_00836 0.48 -0.8 868,800 - MPMX19_00836 0.48 +0.6 868,800 - MPMX19_00836 0.48 +0.1 868,800 - MPMX19_00836 0.48 -0.0 868,800 - MPMX19_00836 0.48 -0.2 868,800 - MPMX19_00836 0.48 -1.2 868,800 - MPMX19_00836 0.48 -1.0 868,800 - MPMX19_00836 0.48 +0.2 868,876 - MPMX19_00836 0.60 +0.2 868,876 - MPMX19_00836 0.60 +0.2 868,876 - MPMX19_00836 0.60 +0.4 868,876 - MPMX19_00836 0.60 -0.3 868,882 + MPMX19_00836 0.61 +0.2 868,884 + MPMX19_00836 0.61 -0.8 868,884 + MPMX19_00836 0.61 -0.8 868,885 - MPMX19_00836 0.62 -1.0 868,885 - MPMX19_00836 0.62 +0.2 868,885 - MPMX19_00836 0.62 +0.1 868,885 - MPMX19_00836 0.62 -1.2 868,885 - MPMX19_00836 0.62 -0.4 868,885 - MPMX19_00836 0.62 +1.0 868,885 - MPMX19_00836 0.62 -1.4 868,920 + MPMX19_00836 0.67 -1.8 868,920 + MPMX19_00836 0.67 +0.8 868,920 + MPMX19_00836 0.67 -0.8 868,920 + MPMX19_00836 0.67 +1.3 868,920 + MPMX19_00836 0.67 -0.7 868,921 - MPMX19_00836 0.67 +0.1 868,921 - MPMX19_00836 0.67 +0.1 868,921 - MPMX19_00836 0.67 +0.2 868,921 - MPMX19_00836 0.67 -0.3 868,947 + MPMX19_00836 0.71 -0.4 868,947 + MPMX19_00836 0.71 -0.0 868,947 + MPMX19_00836 0.71 +0.2 868,947 + MPMX19_00836 0.71 -2.0 868,947 + MPMX19_00836 0.71 -1.3 868,948 - MPMX19_00836 0.71 -1.6 868,948 - MPMX19_00836 0.71 -0.3 868,948 - MPMX19_00836 0.71 -0.1 868,948 - MPMX19_00836 0.71 -0.2 868,950 + MPMX19_00836 0.72 +0.2 868,950 + MPMX19_00836 0.72 -2.7 868,950 + MPMX19_00836 0.72 +0.3 868,950 + MPMX19_00836 0.72 -0.0 868,951 - MPMX19_00836 0.72 -0.0 868,951 - MPMX19_00836 0.72 +0.6 868,951 - MPMX19_00836 0.72 -0.2 868,951 - MPMX19_00836 0.72 -1.1 869,004 + MPMX19_00836 0.80 -1.2 869,167 + -1.2 869,168 - -1.2 869,209 + +1.2 869,209 + -0.4 869,210 - -1.3 869,214 + +0.4 869,214 + +0.8 869,214 + -1.3 869,215 - -0.9 869,215 - -0.8 869,215 - -1.1 869,215 - +0.1 869,215 - -2.8 869,215 - +0.2 869,215 - -0.2 869,229 + +0.4 869,229 + -0.0 869,229 + -2.0 869,229 + +0.1 869,229 + -1.4 869,229 + -0.4 869,230 - -0.2 869,230 - +0.6 869,230 - -1.2 869,230 - +0.8 869,230 - +1.6 869,230 - -0.5 869,249 + -0.4 869,249 + -0.4 869,249 + -0.1 869,250 - -0.4 869,250 - -0.3 869,250 - -0.1 869,277 + +0.2 869,358 + -0.0 869,358 + +1.2 869,358 + -2.1 869,358 + -0.3 869,365 + -0.8 869,999 + -2.1 870,026 + -2.6 870,026 + +0.4 870,026 + -0.7 870,026 + -1.8 870,026 + -0.6 870,027 - -1.0 870,119 + -2.4 870,485 + MPMX19_00838 0.23 -1.0 870,486 - MPMX19_00838 0.23 -0.6 870,812 + MPMX19_00838 0.38 -0.4
Or see this region's nucleotide sequence