Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00808

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00807 and MPMX19_00808 are separated by 275 nucleotidesMPMX19_00808 and MPMX19_00809 are separated by 314 nucleotides MPMX19_00807: MPMX19_00807 - Fumonisin B1 esterase, at 830,024 to 831,952 _00807 MPMX19_00808: MPMX19_00808 - hypothetical protein, at 832,228 to 832,440 _00808 MPMX19_00809: MPMX19_00809 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 832,755 to 833,966 _00809 Position (kb) 832 833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 831.367 kb on - strand, within MPMX19_00807at 831.367 kb on - strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.417 kb on + strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.418 kb on - strand, within MPMX19_00807at 831.531 kb on + strand, within MPMX19_00807at 831.531 kb on + strand, within MPMX19_00807at 831.531 kb on + strand, within MPMX19_00807at 831.531 kb on + strand, within MPMX19_00807at 831.531 kb on + strand, within MPMX19_00807at 831.532 kb on - strand, within MPMX19_00807at 831.532 kb on - strand, within MPMX19_00807at 831.532 kb on - strand, within MPMX19_00807at 831.532 kb on - strand, within MPMX19_00807at 831.532 kb on - strand, within MPMX19_00807at 831.532 kb on - strand, within MPMX19_00807at 831.532 kb on - strand, within MPMX19_00807at 831.693 kb on + strand, within MPMX19_00807at 831.693 kb on + strand, within MPMX19_00807at 831.693 kb on + strand, within MPMX19_00807at 831.693 kb on + strand, within MPMX19_00807at 831.693 kb on + strand, within MPMX19_00807at 831.693 kb on + strand, within MPMX19_00807at 831.693 kb on + strand, within MPMX19_00807at 831.693 kb on + strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.694 kb on - strand, within MPMX19_00807at 831.708 kb on + strand, within MPMX19_00807at 831.708 kb on + strand, within MPMX19_00807at 831.708 kb on + strand, within MPMX19_00807at 831.708 kb on + strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.709 kb on - strand, within MPMX19_00807at 831.934 kb on + strandat 831.988 kb on + strandat 832.027 kb on + strandat 832.191 kb on - strandat 832.191 kb on - strandat 832.191 kb on - strandat 832.200 kb on + strandat 832.200 kb on + strandat 832.200 kb on + strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.234 kb on + strandat 832.235 kb on - strandat 832.235 kb on - strandat 832.416 kb on + strand, within MPMX19_00808at 832.416 kb on + strand, within MPMX19_00808at 832.417 kb on - strand, within MPMX19_00808at 832.570 kb on + strandat 832.570 kb on + strandat 832.570 kb on + strandat 832.570 kb on + strandat 832.570 kb on + strandat 832.571 kb on - strandat 832.571 kb on - strandat 832.571 kb on - strandat 832.571 kb on - strandat 832.583 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.653 kb on + strandat 832.653 kb on + strandat 832.653 kb on + strandat 832.654 kb on - strandat 832.654 kb on - strandat 832.669 kb on + strandat 832.669 kb on + strandat 832.669 kb on + strandat 832.669 kb on + strandat 832.670 kb on - strandat 832.675 kb on + strandat 832.676 kb on - strandat 832.676 kb on - strandat 832.935 kb on - strand, within MPMX19_00809at 832.935 kb on - strand, within MPMX19_00809at 833.094 kb on + strand, within MPMX19_00809at 833.094 kb on + strand, within MPMX19_00809at 833.094 kb on + strand, within MPMX19_00809at 833.094 kb on + strand, within MPMX19_00809at 833.217 kb on + strand, within MPMX19_00809at 833.217 kb on + strand, within MPMX19_00809at 833.217 kb on + strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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831,367 - MPMX19_00807 0.70 -0.6
831,367 - MPMX19_00807 0.70 +0.5
831,417 + MPMX19_00807 0.72 +0.2
831,417 + MPMX19_00807 0.72 -1.6
831,417 + MPMX19_00807 0.72 -2.6
831,417 + MPMX19_00807 0.72 -0.9
831,417 + MPMX19_00807 0.72 -0.0
831,417 + MPMX19_00807 0.72 -0.5
831,417 + MPMX19_00807 0.72 -0.6
831,417 + MPMX19_00807 0.72 -0.2
831,417 + MPMX19_00807 0.72 +0.2
831,417 + MPMX19_00807 0.72 -3.2
831,417 + MPMX19_00807 0.72 -0.0
831,418 - MPMX19_00807 0.72 +0.0
831,418 - MPMX19_00807 0.72 -0.6
831,418 - MPMX19_00807 0.72 -0.2
831,418 - MPMX19_00807 0.72 -0.5
831,418 - MPMX19_00807 0.72 -0.0
831,418 - MPMX19_00807 0.72 +0.1
831,418 - MPMX19_00807 0.72 +0.6
831,418 - MPMX19_00807 0.72 +0.6
831,418 - MPMX19_00807 0.72 +1.3
831,531 + MPMX19_00807 0.78 +0.4
831,531 + MPMX19_00807 0.78 +0.1
831,531 + MPMX19_00807 0.78 -0.2
831,531 + MPMX19_00807 0.78 +0.9
831,531 + MPMX19_00807 0.78 -0.4
831,532 - MPMX19_00807 0.78 +1.1
831,532 - MPMX19_00807 0.78 +0.6
831,532 - MPMX19_00807 0.78 -2.2
831,532 - MPMX19_00807 0.78 +0.5
831,532 - MPMX19_00807 0.78 -1.0
831,532 - MPMX19_00807 0.78 -0.6
831,532 - MPMX19_00807 0.78 -0.8
831,693 + MPMX19_00807 0.87 +0.4
831,693 + MPMX19_00807 0.87 -0.1
831,693 + MPMX19_00807 0.87 -1.0
831,693 + MPMX19_00807 0.87 +0.7
831,693 + MPMX19_00807 0.87 -0.3
831,693 + MPMX19_00807 0.87 +0.6
831,693 + MPMX19_00807 0.87 -0.6
831,693 + MPMX19_00807 0.87 -0.3
831,694 - MPMX19_00807 0.87 -1.8
831,694 - MPMX19_00807 0.87 +1.1
831,694 - MPMX19_00807 0.87 -0.7
831,694 - MPMX19_00807 0.87 +1.2
831,694 - MPMX19_00807 0.87 -0.0
831,694 - MPMX19_00807 0.87 +0.8
831,694 - MPMX19_00807 0.87 -0.5
831,694 - MPMX19_00807 0.87 +2.6
831,694 - MPMX19_00807 0.87 +0.6
831,694 - MPMX19_00807 0.87 -1.0
831,694 - MPMX19_00807 0.87 -0.8
831,694 - MPMX19_00807 0.87 +0.3
831,694 - MPMX19_00807 0.87 -0.6
831,694 - MPMX19_00807 0.87 +0.7
831,708 + MPMX19_00807 0.87 -0.9
831,708 + MPMX19_00807 0.87 -1.0
831,708 + MPMX19_00807 0.87 -0.4
831,708 + MPMX19_00807 0.87 +0.3
831,709 - MPMX19_00807 0.87 -0.1
831,709 - MPMX19_00807 0.87 +0.2
831,709 - MPMX19_00807 0.87 +0.4
831,709 - MPMX19_00807 0.87 -0.1
831,709 - MPMX19_00807 0.87 -0.9
831,709 - MPMX19_00807 0.87 -1.5
831,709 - MPMX19_00807 0.87 -0.6
831,709 - MPMX19_00807 0.87 -0.0
831,709 - MPMX19_00807 0.87 -0.4
831,709 - MPMX19_00807 0.87 -0.0
831,934 + +1.1
831,988 + +0.6
832,027 + -0.2
832,191 - -1.2
832,191 - -0.3
832,191 - -1.7
832,200 + +0.4
832,200 + +0.4
832,200 + +0.2
832,201 - -0.9
832,201 - +0.6
832,201 - -0.5
832,201 - -1.0
832,201 - -1.9
832,201 - +0.3
832,201 - -1.2
832,201 - +0.6
832,201 - -0.6
832,201 - -1.4
832,234 + -0.1
832,235 - +0.5
832,235 - -0.6
832,416 + MPMX19_00808 0.88 +0.4
832,416 + MPMX19_00808 0.88 +0.2
832,417 - MPMX19_00808 0.89 +0.6
832,570 + +0.3
832,570 + +0.9
832,570 + +1.0
832,570 + +0.4
832,570 + +1.2
832,571 - +0.7
832,571 - -1.8
832,571 - -1.6
832,571 - +0.3
832,583 + -1.0
832,619 + +0.1
832,619 + +0.3
832,619 + -0.3
832,619 + -0.9
832,619 + +0.6
832,619 + -1.0
832,619 + +0.5
832,619 + -1.2
832,620 - +0.4
832,620 - -1.4
832,620 - +0.4
832,620 - -0.2
832,620 - -0.7
832,620 - -0.2
832,620 - +1.1
832,620 - +0.2
832,620 - -0.7
832,620 - +0.6
832,653 + +0.0
832,653 + +0.6
832,653 + -2.5
832,654 - -2.0
832,654 - -1.0
832,669 + -2.3
832,669 + +1.5
832,669 + -0.8
832,669 + -0.1
832,670 - +0.4
832,675 + +0.6
832,676 - -0.0
832,676 - -0.9
832,935 - MPMX19_00809 0.15 +0.1
832,935 - MPMX19_00809 0.15 +1.0
833,094 + MPMX19_00809 0.28 +0.1
833,094 + MPMX19_00809 0.28 -0.8
833,094 + MPMX19_00809 0.28 +0.6
833,094 + MPMX19_00809 0.28 +1.3
833,217 + MPMX19_00809 0.38 -0.4
833,217 + MPMX19_00809 0.38 -1.4
833,217 + MPMX19_00809 0.38 -0.4
833,218 - MPMX19_00809 0.38 -1.2
833,218 - MPMX19_00809 0.38 +0.8
833,218 - MPMX19_00809 0.38 -1.3
833,218 - MPMX19_00809 0.38 +0.1
833,218 - MPMX19_00809 0.38 -1.1
833,218 - MPMX19_00809 0.38 -0.0

Or see this region's nucleotide sequence