Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00712 and MPMX19_00713 are separated by 196 nucleotides MPMX19_00713 and MPMX19_00714 are separated by 87 nucleotides MPMX19_00714 and MPMX19_00715 are separated by 126 nucleotides
MPMX19_00712: MPMX19_00712 - hypothetical protein, at 735,089 to 735,562
_00712
MPMX19_00713: MPMX19_00713 - Pyridoxine/pyridoxamine 5'-phosphate oxidase, at 735,759 to 736,391
_00713
MPMX19_00714: MPMX19_00714 - Ferrous-iron efflux pump FieF, at 736,479 to 737,414
_00714
MPMX19_00715: MPMX19_00715 - hypothetical protein, at 737,541 to 739,052
_00715
Position (kb) 736
737
738 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.639 kb on - strand at 736.389 kb on + strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.443 kb on + strand at 736.443 kb on + strand at 736.540 kb on - strand at 736.540 kb on - strand at 736.540 kb on - strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 737.457 kb on + strand at 737.458 kb on - strand at 737.467 kb on + strand at 737.526 kb on + strand at 737.531 kb on + strand at 737.531 kb on + strand at 737.532 kb on - strand at 737.532 kb on - strand at 737.532 kb on - strand at 737.536 kb on + strand at 737.592 kb on + strand at 737.606 kb on + strand at 737.606 kb on + strand at 737.607 kb on - strand at 737.607 kb on - strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 735,626 + +0.1 735,626 + +0.9 735,626 + -0.4 735,626 + -0.6 735,626 + +0.4 735,626 + -0.6 735,626 + +0.2 735,626 + +0.0 735,626 + -0.6 735,626 + -2.1 735,626 + +0.6 735,626 + -0.3 735,626 + -2.4 735,626 + -0.9 735,626 + -0.9 735,626 + -1.0 735,627 - -1.3 735,627 - -2.3 735,627 - +0.2 735,627 - -2.4 735,627 - +1.0 735,627 - -2.5 735,627 - -1.5 735,627 - +0.3 735,627 - -0.3 735,627 - -1.6 735,627 - -1.6 735,627 - -1.3 735,627 - -1.7 735,627 - -1.9 735,627 - -0.1 735,627 - -1.4 735,627 - -0.7 735,628 + +0.1 735,628 + +0.3 735,628 + -1.5 735,628 + -0.1 735,628 + -2.6 735,628 + -1.9 735,628 + -0.2 735,628 + +0.9 735,628 + +0.0 735,628 + -1.0 735,628 + -0.7 735,628 + -2.5 735,628 + +0.1 735,628 + +1.2 735,628 + +1.3 735,628 + -1.2 735,628 + -1.2 735,628 + -2.9 735,628 + -0.0 735,628 + -2.2 735,628 + +0.5 735,628 + +0.3 735,628 + -2.3 735,628 + -0.1 735,628 + +0.0 735,628 + -0.4 735,629 - +0.0 735,629 - -0.7 735,629 - +0.0 735,629 - -0.6 735,629 - -2.0 735,629 - +0.6 735,629 - +0.2 735,629 - +1.3 735,629 - -0.4 735,629 - -2.3 735,629 - -0.1 735,629 - -1.6 735,629 - -0.1 735,629 - -1.0 735,629 - -0.1 735,629 - -0.5 735,629 - -0.4 735,629 - -0.6 735,629 - -0.4 735,629 - -1.3 735,629 - -0.4 735,629 - -1.9 735,629 - -1.2 735,629 - -1.7 735,629 - -0.1 735,629 - +0.9 735,629 - -0.8 735,629 - +0.4 735,629 - +0.1 735,629 - -0.7 735,629 - -1.6 735,629 - -0.8 735,629 - -2.0 735,629 - -2.0 735,629 - -0.6 735,629 - -2.1 735,629 - -0.3 735,629 - +0.6 735,629 - -1.1 735,629 - +1.3 735,629 - +0.1 735,629 - -0.4 735,638 + -0.6 735,638 + -1.7 735,638 + -0.2 735,638 + -0.2 735,639 - -1.4 736,389 + -0.2 736,419 - +0.1 736,419 - -0.7 736,429 + +1.2 736,429 + -1.6 736,429 + -0.4 736,429 + +0.4 736,429 + +0.1 736,429 + -1.7 736,429 + -1.1 736,429 + -1.1 736,430 - -1.9 736,430 - -0.7 736,430 - -1.2 736,430 - -1.6 736,443 + +0.2 736,443 + -0.6 736,540 - -2.6 736,540 - -1.6 736,540 - -1.4 736,548 + -1.2 736,548 + -2.4 736,548 + +0.8 736,548 + -0.2 736,548 + -0.2 736,548 + -0.2 736,548 + -2.1 736,548 + +0.2 736,548 + -0.4 736,548 + +1.1 736,548 + -1.0 736,548 + -0.1 736,548 + -1.6 736,548 + -1.6 736,548 + -1.0 736,548 + -1.4 736,548 + -0.7 736,548 + -1.6 736,548 + +0.5 736,548 + -1.2 736,548 + -1.0 736,548 + +0.2 736,548 + +0.4 736,548 + -0.6 736,548 + -0.2 736,549 - -1.7 736,549 - -0.8 736,549 - -2.1 736,549 - -1.6 736,549 - -0.6 736,549 - -0.9 736,549 - -1.7 736,549 - -0.2 736,549 - +0.7 736,549 - -1.8 736,549 - -3.4 736,549 - -0.4 736,549 - -2.2 736,549 - -1.4 736,549 - -1.7 736,549 - -1.3 736,549 - -0.4 736,549 - -3.8 736,549 - -1.4 736,549 - -2.8 736,549 - -1.2 736,549 - +0.9 736,549 - -1.1 736,549 - +0.5 736,549 - +0.6 736,549 - -1.6 736,599 + MPMX19_00714 0.13 -0.2 736,599 + MPMX19_00714 0.13 -0.6 736,599 + MPMX19_00714 0.13 -1.6 736,599 + MPMX19_00714 0.13 -0.9 736,599 + MPMX19_00714 0.13 -2.0 736,600 - MPMX19_00714 0.13 -1.3 736,600 - MPMX19_00714 0.13 -0.2 736,600 - MPMX19_00714 0.13 -2.7 736,600 - MPMX19_00714 0.13 -0.6 736,600 - MPMX19_00714 0.13 +1.6 736,600 - MPMX19_00714 0.13 +0.0 736,600 - MPMX19_00714 0.13 -2.2 736,600 - MPMX19_00714 0.13 -0.2 736,968 + MPMX19_00714 0.52 -1.6 736,968 + MPMX19_00714 0.52 -1.2 736,968 + MPMX19_00714 0.52 -1.0 736,968 + MPMX19_00714 0.52 -0.9 736,968 + MPMX19_00714 0.52 -1.1 736,968 + MPMX19_00714 0.52 -0.7 736,968 + MPMX19_00714 0.52 -1.2 736,968 + MPMX19_00714 0.52 -1.4 736,968 + MPMX19_00714 0.52 -2.2 736,968 + MPMX19_00714 0.52 -0.6 736,969 - MPMX19_00714 0.52 +0.6 736,969 - MPMX19_00714 0.52 -1.9 736,969 - MPMX19_00714 0.52 -0.7 736,969 - MPMX19_00714 0.52 -0.2 736,969 - MPMX19_00714 0.52 +1.0 736,969 - MPMX19_00714 0.52 -1.2 736,969 - MPMX19_00714 0.52 -0.8 736,969 - MPMX19_00714 0.52 -3.3 736,969 - MPMX19_00714 0.52 -1.4 736,969 - MPMX19_00714 0.52 -2.1 736,969 - MPMX19_00714 0.52 -0.3 737,457 + -1.5 737,458 - +0.6 737,467 + -1.0 737,526 + +0.4 737,531 + +0.1 737,531 + +1.2 737,532 - +0.1 737,532 - -0.6 737,532 - +0.4 737,536 + +0.2 737,592 + +0.2 737,606 + -1.9 737,606 + +0.6 737,607 - -0.6 737,607 - -0.7 737,609 + +0.9 737,609 + -0.1 737,609 + -1.3 737,609 + +0.8 737,609 + +0.9 737,609 + +0.2 737,609 + -0.9 737,609 + -1.9 737,610 - +0.4 737,610 - -1.4 737,610 - +0.3 737,610 - +0.6 737,610 - -1.7 737,610 - +0.8
Or see this region's nucleotide sequence