Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00690 and MPMX19_00691 are separated by 399 nucleotides MPMX19_00691 and MPMX19_00692 are separated by 4 nucleotides MPMX19_00692 and MPMX19_00693 are separated by 243 nucleotides MPMX19_00693 and MPMX19_00694 are separated by 123 nucleotides
MPMX19_00690: MPMX19_00690 - Transketolase 1, at 712,177 to 714,171
_00690
MPMX19_00691: MPMX19_00691 - hypothetical protein, at 714,571 to 714,795
_00691
MPMX19_00692: MPMX19_00692 - hypothetical protein, at 714,800 to 715,108
_00692
MPMX19_00693: MPMX19_00693 - 5-formyltetrahydrofolate cyclo-ligase, at 715,352 to 715,942
_00693
MPMX19_00694: MPMX19_00694 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 716,066 to 716,890
_00694
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 714.404 kb on - strand at 714.410 kb on + strand at 714.411 kb on - strand at 714.411 kb on - strand at 714.473 kb on + strand at 714.473 kb on + strand at 714.473 kb on + strand at 714.473 kb on + strand at 714.473 kb on + strand at 714.473 kb on + strand at 714.473 kb on + strand at 714.474 kb on - strand at 714.474 kb on - strand at 714.474 kb on - strand at 714.474 kb on - strand at 714.474 kb on - strand at 714.474 kb on - strand at 714.485 kb on + strand at 714.836 kb on + strand, within MPMX19_00692 at 714.836 kb on + strand, within MPMX19_00692 at 714.836 kb on + strand, within MPMX19_00692 at 714.836 kb on + strand, within MPMX19_00692 at 714.836 kb on + strand, within MPMX19_00692 at 714.836 kb on + strand, within MPMX19_00692 at 714.836 kb on + strand, within MPMX19_00692 at 714.836 kb on + strand, within MPMX19_00692 at 714.836 kb on + strand, within MPMX19_00692 at 714.837 kb on - strand, within MPMX19_00692 at 714.837 kb on - strand, within MPMX19_00692 at 714.837 kb on - strand, within MPMX19_00692 at 714.837 kb on - strand, within MPMX19_00692 at 714.837 kb on - strand, within MPMX19_00692 at 714.837 kb on - strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.890 kb on + strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 714.891 kb on - strand, within MPMX19_00692 at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.115 kb on - strand at 715.115 kb on - strand at 715.115 kb on - strand at 715.152 kb on + strand at 715.152 kb on + strand at 715.152 kb on + strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.181 kb on + strand at 715.181 kb on + strand at 715.181 kb on + strand at 715.182 kb on - strand at 715.182 kb on - strand at 715.182 kb on - strand at 715.216 kb on + strand at 715.217 kb on - strand at 715.217 kb on - strand at 715.253 kb on + strand at 715.254 kb on - strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.260 kb on - strand at 715.260 kb on - strand at 715.292 kb on + strand at 715.292 kb on + strand at 715.292 kb on + strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.511 kb on + strand, within MPMX19_00693 at 715.511 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.665 kb on - strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.764 kb on - strand, within MPMX19_00693 at 715.775 kb on + strand, within MPMX19_00693 at 715.776 kb on - strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.947 kb on + strand at 715.947 kb on + strand at 715.947 kb on + strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.964 kb on + strand at 715.964 kb on + strand at 715.965 kb on - strand at 715.981 kb on + strand at 715.981 kb on + strand at 715.982 kb on - strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.984 kb on - strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 714,404 - +0.0 714,410 + -0.5 714,411 - +0.1 714,411 - +2.0 714,473 + -0.2 714,473 + -0.8 714,473 + +0.3 714,473 + -0.4 714,473 + +1.6 714,473 + -1.3 714,473 + -0.9 714,474 - -1.6 714,474 - -0.2 714,474 - -1.1 714,474 - -0.1 714,474 - -0.6 714,474 - +0.3 714,485 + -0.2 714,836 + MPMX19_00692 0.12 -1.0 714,836 + MPMX19_00692 0.12 -0.4 714,836 + MPMX19_00692 0.12 +0.3 714,836 + MPMX19_00692 0.12 -1.3 714,836 + MPMX19_00692 0.12 +0.1 714,836 + MPMX19_00692 0.12 +0.0 714,836 + MPMX19_00692 0.12 -0.2 714,836 + MPMX19_00692 0.12 +0.9 714,836 + MPMX19_00692 0.12 -0.3 714,837 - MPMX19_00692 0.12 -0.4 714,837 - MPMX19_00692 0.12 -0.8 714,837 - MPMX19_00692 0.12 -0.9 714,837 - MPMX19_00692 0.12 +1.4 714,837 - MPMX19_00692 0.12 -0.5 714,837 - MPMX19_00692 0.12 -0.4 714,890 + MPMX19_00692 0.29 -0.1 714,890 + MPMX19_00692 0.29 -1.0 714,890 + MPMX19_00692 0.29 -1.3 714,890 + MPMX19_00692 0.29 -1.1 714,890 + MPMX19_00692 0.29 -0.6 714,890 + MPMX19_00692 0.29 -1.1 714,890 + MPMX19_00692 0.29 -0.9 714,890 + MPMX19_00692 0.29 -0.7 714,890 + MPMX19_00692 0.29 -0.1 714,890 + MPMX19_00692 0.29 -1.6 714,890 + MPMX19_00692 0.29 -0.7 714,890 + MPMX19_00692 0.29 -2.0 714,890 + MPMX19_00692 0.29 -1.1 714,890 + MPMX19_00692 0.29 -0.3 714,890 + MPMX19_00692 0.29 -2.5 714,890 + MPMX19_00692 0.29 -1.0 714,890 + MPMX19_00692 0.29 -0.4 714,890 + MPMX19_00692 0.29 -0.6 714,891 - MPMX19_00692 0.29 -1.2 714,891 - MPMX19_00692 0.29 -1.3 714,891 - MPMX19_00692 0.29 -0.9 714,891 - MPMX19_00692 0.29 -0.3 714,891 - MPMX19_00692 0.29 -1.9 714,891 - MPMX19_00692 0.29 -0.9 714,891 - MPMX19_00692 0.29 -1.1 714,891 - MPMX19_00692 0.29 +1.3 714,891 - MPMX19_00692 0.29 -0.6 714,891 - MPMX19_00692 0.29 +0.2 714,891 - MPMX19_00692 0.29 +0.2 714,891 - MPMX19_00692 0.29 -1.6 714,891 - MPMX19_00692 0.29 +0.9 715,106 + +0.3 715,106 + -1.2 715,106 + +0.1 715,106 + -2.9 715,106 + +0.7 715,106 + +0.6 715,107 - +0.0 715,107 - -1.5 715,107 - +1.1 715,107 - +0.6 715,107 - +0.0 715,107 - +0.6 715,107 - -0.4 715,107 - -0.9 715,107 - -1.4 715,114 + +0.2 715,114 + -0.2 715,114 + -0.5 715,114 + +1.0 715,114 + +1.2 715,114 + +0.2 715,114 + +1.2 715,115 - +1.6 715,115 - +0.6 715,115 - +0.1 715,152 + -0.5 715,152 + -0.4 715,152 + -0.9 715,153 - -0.8 715,153 - -0.7 715,153 - -1.4 715,153 - -0.4 715,153 - +0.1 715,153 - -2.5 715,153 - -0.4 715,153 - +0.0 715,153 - -1.9 715,153 - -0.7 715,153 - +0.0 715,153 - +0.6 715,181 + +1.6 715,181 + +1.6 715,181 + -0.4 715,182 - +1.3 715,182 - -1.4 715,182 - +0.0 715,216 + +0.0 715,217 - +1.6 715,217 - -0.4 715,253 + +0.0 715,254 - +0.6 715,259 + -1.0 715,259 + +0.0 715,259 + +0.0 715,259 + -0.7 715,259 + +0.4 715,259 + +3.9 715,259 + -0.3 715,260 - -1.2 715,260 - -0.4 715,292 + -0.7 715,292 + -0.0 715,292 + -0.4 715,293 - +0.4 715,293 - -1.0 715,293 - -0.4 715,293 - -1.9 715,293 - +1.0 715,511 + MPMX19_00693 0.27 -1.0 715,511 + MPMX19_00693 0.27 +0.1 715,561 + MPMX19_00693 0.35 -1.1 715,561 + MPMX19_00693 0.35 +0.6 715,561 + MPMX19_00693 0.35 -0.7 715,561 + MPMX19_00693 0.35 -0.1 715,561 + MPMX19_00693 0.35 -0.3 715,561 + MPMX19_00693 0.35 -0.2 715,561 + MPMX19_00693 0.35 -1.6 715,561 + MPMX19_00693 0.35 -0.9 715,561 + MPMX19_00693 0.35 -2.5 715,562 - MPMX19_00693 0.36 +1.4 715,562 - MPMX19_00693 0.36 -1.1 715,562 - MPMX19_00693 0.36 -0.7 715,562 - MPMX19_00693 0.36 -0.7 715,562 - MPMX19_00693 0.36 +1.6 715,665 - MPMX19_00693 0.53 +0.3 715,763 + MPMX19_00693 0.70 -0.2 715,763 + MPMX19_00693 0.70 -1.2 715,763 + MPMX19_00693 0.70 -1.9 715,764 - MPMX19_00693 0.70 +0.4 715,775 + MPMX19_00693 0.72 -2.6 715,776 - MPMX19_00693 0.72 -2.3 715,778 + MPMX19_00693 0.72 -0.3 715,778 + MPMX19_00693 0.72 +0.5 715,778 + MPMX19_00693 0.72 -0.5 715,778 + MPMX19_00693 0.72 -0.6 715,778 + MPMX19_00693 0.72 -1.7 715,778 + MPMX19_00693 0.72 +0.6 715,778 + MPMX19_00693 0.72 -1.1 715,778 + MPMX19_00693 0.72 -3.0 715,778 + MPMX19_00693 0.72 +1.3 715,778 + MPMX19_00693 0.72 -1.9 715,779 - MPMX19_00693 0.72 -0.6 715,779 - MPMX19_00693 0.72 +0.4 715,779 - MPMX19_00693 0.72 +2.0 715,779 - MPMX19_00693 0.72 -1.7 715,779 - MPMX19_00693 0.72 -0.1 715,779 - MPMX19_00693 0.72 +0.7 715,936 + -0.1 715,936 + -0.2 715,936 + -0.2 715,936 + +0.2 715,936 + -0.1 715,936 + -1.3 715,936 + +0.4 715,936 + +0.4 715,936 + -1.2 715,936 + -0.5 715,936 + +0.0 715,936 + -0.0 715,936 + -1.2 715,936 + -0.7 715,936 + -0.2 715,936 + -0.4 715,936 + -0.7 715,936 + -0.9 715,937 - +0.6 715,937 - +0.6 715,937 - +0.6 715,937 - -0.3 715,937 - +1.0 715,937 - -2.6 715,937 - -0.4 715,937 - +0.0 715,937 - -0.7 715,937 - +0.6 715,937 - -1.4 715,937 - -1.6 715,945 + -1.2 715,945 + +0.6 715,945 + -0.3 715,945 + -1.6 715,945 + -1.1 715,945 + -1.1 715,945 + -0.9 715,945 + -1.5 715,945 + -0.6 715,945 + -0.0 715,946 - +1.0 715,946 - -2.0 715,946 - +1.0 715,946 - +0.2 715,947 + +0.0 715,947 + -0.4 715,947 + -1.1 715,948 - +0.0 715,948 - +0.3 715,948 - +1.0 715,948 - +0.3 715,961 + -0.2 715,961 + -1.7 715,961 + +0.1 715,961 + -0.7 715,961 + -0.9 715,961 + -1.4 715,962 - +1.3 715,962 - -1.4 715,962 - -0.2 715,962 - -1.7 715,964 + -0.3 715,964 + -0.7 715,965 - +0.3 715,981 + -0.7 715,981 + -1.9 715,982 - -1.2 715,983 + +1.4 715,983 + -1.1 715,983 + +0.2 715,983 + +0.3 715,983 + -1.2 715,983 + -0.1 715,983 + -0.7 715,983 + -2.1 715,983 + +0.0 715,983 + -1.3 715,984 - +1.3 716,046 + +0.6 716,046 + -0.4 716,046 + -1.4 716,046 + +0.3 716,046 + +1.1
Or see this region's nucleotide sequence