Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00629

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00627 and MPMX19_00628 are separated by 5 nucleotidesMPMX19_00628 and MPMX19_00629 are separated by 19 nucleotidesMPMX19_00629 and MPMX19_00630 are separated by 156 nucleotides MPMX19_00627: MPMX19_00627 - hypothetical protein, at 644,966 to 646,153 _00627 MPMX19_00628: MPMX19_00628 - hypothetical protein, at 646,159 to 646,611 _00628 MPMX19_00629: MPMX19_00629 - hypothetical protein, at 646,631 to 646,771 _00629 MPMX19_00630: MPMX19_00630 - hypothetical protein, at 646,928 to 648,427 _00630 Position (kb) 646 647Strain fitness (log2 ratio) -3 -2 -1 0 1at 645.732 kb on + strand, within MPMX19_00627at 645.732 kb on + strand, within MPMX19_00627at 645.732 kb on + strand, within MPMX19_00627at 645.732 kb on + strand, within MPMX19_00627at 645.732 kb on + strand, within MPMX19_00627at 645.732 kb on + strand, within MPMX19_00627at 645.733 kb on - strand, within MPMX19_00627at 645.733 kb on - strand, within MPMX19_00627at 645.733 kb on - strand, within MPMX19_00627at 645.733 kb on - strand, within MPMX19_00627at 645.733 kb on - strand, within MPMX19_00627at 645.733 kb on - strand, within MPMX19_00627at 645.889 kb on + strand, within MPMX19_00627at 645.889 kb on + strand, within MPMX19_00627at 645.890 kb on - strand, within MPMX19_00627at 645.890 kb on - strand, within MPMX19_00627at 645.890 kb on - strand, within MPMX19_00627at 645.890 kb on - strand, within MPMX19_00627at 645.906 kb on + strand, within MPMX19_00627at 645.906 kb on + strand, within MPMX19_00627at 645.906 kb on + strand, within MPMX19_00627at 645.906 kb on + strand, within MPMX19_00627at 645.906 kb on + strand, within MPMX19_00627at 645.906 kb on + strand, within MPMX19_00627at 645.907 kb on - strand, within MPMX19_00627at 645.907 kb on - strand, within MPMX19_00627at 645.907 kb on - strand, within MPMX19_00627at 645.992 kb on - strand, within MPMX19_00627at 646.128 kb on + strandat 646.128 kb on + strandat 646.128 kb on + strandat 646.128 kb on + strandat 646.128 kb on + strandat 646.128 kb on + strandat 646.128 kb on + strandat 646.128 kb on + strandat 646.129 kb on - strandat 646.129 kb on - strandat 646.129 kb on - strandat 646.129 kb on - strandat 646.129 kb on - strandat 646.129 kb on - strandat 646.129 kb on - strandat 646.129 kb on - strandat 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.647 kb on + strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.648 kb on - strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.734 kb on + strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.735 kb on - strand, within MPMX19_00629at 646.992 kb on + strandat 647.121 kb on + strand, within MPMX19_00630at 647.121 kb on + strand, within MPMX19_00630at 647.122 kb on - strand, within MPMX19_00630at 647.122 kb on - strand, within MPMX19_00630at 647.122 kb on - strand, within MPMX19_00630at 647.122 kb on - strand, within MPMX19_00630at 647.472 kb on + strand, within MPMX19_00630at 647.472 kb on + strand, within MPMX19_00630at 647.472 kb on + strand, within MPMX19_00630at 647.472 kb on + strand, within MPMX19_00630at 647.472 kb on + strand, within MPMX19_00630at 647.472 kb on + strand, within MPMX19_00630at 647.472 kb on + strand, within MPMX19_00630at 647.473 kb on - strand, within MPMX19_00630at 647.473 kb on - strand, within MPMX19_00630at 647.473 kb on - strand, within MPMX19_00630at 647.473 kb on - strand, within MPMX19_00630at 647.473 kb on - strand, within MPMX19_00630at 647.473 kb on - strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.538 kb on + strand, within MPMX19_00630at 647.539 kb on - strand, within MPMX19_00630at 647.539 kb on - strand, within MPMX19_00630at 647.539 kb on - strand, within MPMX19_00630at 647.539 kb on - strand, within MPMX19_00630at 647.539 kb on - strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.757 kb on + strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630at 647.758 kb on - strand, within MPMX19_00630

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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645,732 + MPMX19_00627 0.64 -0.5
645,732 + MPMX19_00627 0.64 -0.9
645,732 + MPMX19_00627 0.64 +0.9
645,732 + MPMX19_00627 0.64 -1.6
645,732 + MPMX19_00627 0.64 +0.0
645,732 + MPMX19_00627 0.64 -0.4
645,733 - MPMX19_00627 0.65 -0.7
645,733 - MPMX19_00627 0.65 +0.5
645,733 - MPMX19_00627 0.65 -0.7
645,733 - MPMX19_00627 0.65 -0.6
645,733 - MPMX19_00627 0.65 -1.2
645,733 - MPMX19_00627 0.65 -0.5
645,889 + MPMX19_00627 0.78 -1.6
645,889 + MPMX19_00627 0.78 +0.4
645,890 - MPMX19_00627 0.78 +0.0
645,890 - MPMX19_00627 0.78 -0.3
645,890 - MPMX19_00627 0.78 -0.4
645,890 - MPMX19_00627 0.78 -0.5
645,906 + MPMX19_00627 0.79 +0.0
645,906 + MPMX19_00627 0.79 +0.9
645,906 + MPMX19_00627 0.79 +0.0
645,906 + MPMX19_00627 0.79 -0.4
645,906 + MPMX19_00627 0.79 -1.2
645,906 + MPMX19_00627 0.79 -1.1
645,907 - MPMX19_00627 0.79 +0.3
645,907 - MPMX19_00627 0.79 -2.0
645,907 - MPMX19_00627 0.79 +0.3
645,992 - MPMX19_00627 0.86 -0.8
646,128 + +0.3
646,128 + -1.1
646,128 + -0.3
646,128 + -0.4
646,128 + +0.5
646,128 + -0.7
646,128 + -0.4
646,128 + -2.1
646,129 - +0.8
646,129 - -0.4
646,129 - -0.9
646,129 - -1.0
646,129 - -1.5
646,129 - +0.2
646,129 - +0.7
646,129 - -1.7
646,647 + MPMX19_00629 0.11 -1.1
646,647 + MPMX19_00629 0.11 -1.6
646,647 + MPMX19_00629 0.11 +0.3
646,647 + MPMX19_00629 0.11 -1.0
646,647 + MPMX19_00629 0.11 +1.0
646,647 + MPMX19_00629 0.11 -0.4
646,647 + MPMX19_00629 0.11 -1.6
646,647 + MPMX19_00629 0.11 +0.0
646,647 + MPMX19_00629 0.11 +0.5
646,647 + MPMX19_00629 0.11 -1.2
646,648 - MPMX19_00629 0.12 -1.5
646,648 - MPMX19_00629 0.12 -0.7
646,648 - MPMX19_00629 0.12 +0.2
646,648 - MPMX19_00629 0.12 +1.0
646,648 - MPMX19_00629 0.12 +0.3
646,648 - MPMX19_00629 0.12 +0.1
646,648 - MPMX19_00629 0.12 +1.4
646,648 - MPMX19_00629 0.12 -0.4
646,648 - MPMX19_00629 0.12 -1.4
646,648 - MPMX19_00629 0.12 -0.5
646,648 - MPMX19_00629 0.12 -0.6
646,648 - MPMX19_00629 0.12 -1.0
646,734 + MPMX19_00629 0.73 +0.2
646,734 + MPMX19_00629 0.73 -1.0
646,734 + MPMX19_00629 0.73 -1.2
646,734 + MPMX19_00629 0.73 -2.0
646,734 + MPMX19_00629 0.73 -0.3
646,734 + MPMX19_00629 0.73 -2.4
646,734 + MPMX19_00629 0.73 -0.1
646,734 + MPMX19_00629 0.73 +0.9
646,734 + MPMX19_00629 0.73 +0.4
646,734 + MPMX19_00629 0.73 +0.6
646,734 + MPMX19_00629 0.73 -0.7
646,735 - MPMX19_00629 0.74 -0.6
646,735 - MPMX19_00629 0.74 -1.1
646,735 - MPMX19_00629 0.74 -0.8
646,735 - MPMX19_00629 0.74 -0.7
646,735 - MPMX19_00629 0.74 +0.4
646,735 - MPMX19_00629 0.74 -1.4
646,735 - MPMX19_00629 0.74 -0.7
646,735 - MPMX19_00629 0.74 +0.5
646,735 - MPMX19_00629 0.74 -1.0
646,735 - MPMX19_00629 0.74 -0.1
646,735 - MPMX19_00629 0.74 -0.8
646,735 - MPMX19_00629 0.74 +0.2
646,735 - MPMX19_00629 0.74 +1.3
646,735 - MPMX19_00629 0.74 +1.0
646,735 - MPMX19_00629 0.74 -0.1
646,992 + +0.9
647,121 + MPMX19_00630 0.13 -1.1
647,121 + MPMX19_00630 0.13 -2.0
647,122 - MPMX19_00630 0.13 -0.3
647,122 - MPMX19_00630 0.13 -1.6
647,122 - MPMX19_00630 0.13 -1.0
647,122 - MPMX19_00630 0.13 +1.6
647,472 + MPMX19_00630 0.36 +0.2
647,472 + MPMX19_00630 0.36 +0.1
647,472 + MPMX19_00630 0.36 -2.8
647,472 + MPMX19_00630 0.36 -0.9
647,472 + MPMX19_00630 0.36 -0.8
647,472 + MPMX19_00630 0.36 -0.7
647,472 + MPMX19_00630 0.36 -1.4
647,473 - MPMX19_00630 0.36 +0.0
647,473 - MPMX19_00630 0.36 -0.2
647,473 - MPMX19_00630 0.36 +0.8
647,473 - MPMX19_00630 0.36 +0.3
647,473 - MPMX19_00630 0.36 +0.9
647,473 - MPMX19_00630 0.36 +0.4
647,538 + MPMX19_00630 0.41 -0.9
647,538 + MPMX19_00630 0.41 +0.1
647,538 + MPMX19_00630 0.41 -0.2
647,538 + MPMX19_00630 0.41 +0.6
647,538 + MPMX19_00630 0.41 -1.8
647,538 + MPMX19_00630 0.41 +0.7
647,538 + MPMX19_00630 0.41 -0.9
647,538 + MPMX19_00630 0.41 +0.3
647,538 + MPMX19_00630 0.41 +0.2
647,539 - MPMX19_00630 0.41 +0.8
647,539 - MPMX19_00630 0.41 -0.4
647,539 - MPMX19_00630 0.41 -0.1
647,539 - MPMX19_00630 0.41 +0.0
647,539 - MPMX19_00630 0.41 -0.9
647,757 + MPMX19_00630 0.55 +0.3
647,757 + MPMX19_00630 0.55 -0.3
647,757 + MPMX19_00630 0.55 -2.0
647,757 + MPMX19_00630 0.55 +0.6
647,757 + MPMX19_00630 0.55 -1.4
647,757 + MPMX19_00630 0.55 +0.1
647,757 + MPMX19_00630 0.55 -0.6
647,757 + MPMX19_00630 0.55 -1.3
647,757 + MPMX19_00630 0.55 +1.2
647,757 + MPMX19_00630 0.55 -1.3
647,758 - MPMX19_00630 0.55 -0.9
647,758 - MPMX19_00630 0.55 -0.4
647,758 - MPMX19_00630 0.55 -0.1
647,758 - MPMX19_00630 0.55 -0.3
647,758 - MPMX19_00630 0.55 +0.4
647,758 - MPMX19_00630 0.55 -0.4
647,758 - MPMX19_00630 0.55 -0.2
647,758 - MPMX19_00630 0.55 -0.4
647,758 - MPMX19_00630 0.55 +0.3
647,758 - MPMX19_00630 0.55 +0.5

Or see this region's nucleotide sequence