Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00570 and MPMX19_00571 are separated by 28 nucleotides MPMX19_00571 and MPMX19_00572 are separated by 155 nucleotides MPMX19_00572 and MPMX19_00573 are separated by 20 nucleotides MPMX19_00573 and MPMX19_00574 are separated by 142 nucleotides
MPMX19_00570: MPMX19_00570 - L-Ala-D/L-Glu epimerase, at 585,580 to 586,572
_00570
MPMX19_00571: MPMX19_00571 - Putative pterin-4-alpha-carbinolamine dehydratase, at 586,601 to 587,011
_00571
MPMX19_00572: MPMX19_00572 - Type-4 uracil-DNA glycosylase, at 587,167 to 587,772
_00572
MPMX19_00573: MPMX19_00573 - hypothetical protein, at 587,793 to 588,452
_00573
MPMX19_00574: MPMX19_00574 - hypothetical protein, at 588,595 to 589,440
_00574
Position (kb) 587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 586.306 kb on + strand, within MPMX19_00570 at 586.306 kb on + strand, within MPMX19_00570 at 586.307 kb on - strand, within MPMX19_00570 at 586.307 kb on - strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.570 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.761 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 587.055 kb on + strand at 587.055 kb on + strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.063 kb on + strand at 587.063 kb on + strand at 587.064 kb on - strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.071 kb on - strand at 587.071 kb on - strand at 587.071 kb on - strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.548 kb on + strand, within MPMX19_00572 at 587.548 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.002 kb on - strand, within MPMX19_00573 at 588.295 kb on + strand, within MPMX19_00573 at 588.296 kb on - strand, within MPMX19_00573 at 588.296 kb on - strand, within MPMX19_00573 at 588.296 kb on - strand, within MPMX19_00573 at 588.296 kb on - strand, within MPMX19_00573 at 588.296 kb on - strand, within MPMX19_00573 at 588.296 kb on - strand, within MPMX19_00573 at 588.375 kb on + strand, within MPMX19_00573 at 588.417 kb on - strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.452 kb on + strand at 588.453 kb on - strand at 588.453 kb on - strand at 588.453 kb on - strand at 588.503 kb on + strand at 588.503 kb on + strand at 588.503 kb on + strand at 588.504 kb on - strand at 588.504 kb on - strand at 588.512 kb on + strand at 588.512 kb on + strand at 588.512 kb on + strand at 588.512 kb on + strand at 588.513 kb on - strand at 588.513 kb on - strand at 588.513 kb on - strand at 588.516 kb on + strand at 588.516 kb on + strand at 588.516 kb on + strand at 588.517 kb on - strand at 588.517 kb on - strand at 588.517 kb on - strand at 588.517 kb on - strand at 588.517 kb on - strand at 588.517 kb on - strand at 588.530 kb on + strand at 588.530 kb on + strand at 588.531 kb on - strand at 588.531 kb on - strand at 588.531 kb on - strand at 588.531 kb on - strand at 588.657 kb on + strand at 588.728 kb on + strand, within MPMX19_00574 at 588.728 kb on + strand, within MPMX19_00574 at 588.728 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 586,306 + MPMX19_00570 0.73 -1.4 586,306 + MPMX19_00570 0.73 +0.4 586,307 - MPMX19_00570 0.73 -0.2 586,307 - MPMX19_00570 0.73 -0.8 586,468 + MPMX19_00570 0.89 +0.0 586,468 + MPMX19_00570 0.89 -0.7 586,468 + MPMX19_00570 0.89 -1.4 586,468 + MPMX19_00570 0.89 -0.3 586,468 + MPMX19_00570 0.89 +0.1 586,468 + MPMX19_00570 0.89 -0.3 586,468 + MPMX19_00570 0.89 -1.2 586,469 - MPMX19_00570 0.90 -1.0 586,469 - MPMX19_00570 0.90 -0.1 586,469 - MPMX19_00570 0.90 -1.8 586,469 - MPMX19_00570 0.90 -2.5 586,469 - MPMX19_00570 0.90 +0.1 586,469 - MPMX19_00570 0.90 +0.4 586,469 - MPMX19_00570 0.90 -0.5 586,469 - MPMX19_00570 0.90 -1.2 586,469 - MPMX19_00570 0.90 +0.1 586,469 - MPMX19_00570 0.90 -0.1 586,525 + -0.4 586,525 + -0.6 586,525 + -0.6 586,525 + -0.6 586,525 + -0.2 586,525 + -2.3 586,525 + -0.0 586,525 + -1.1 586,526 - -1.8 586,526 - +0.9 586,526 - -1.7 586,526 - -0.1 586,526 - -0.9 586,526 - -0.5 586,526 - -1.0 586,570 + +0.5 586,617 + +0.3 586,617 + -2.2 586,617 + -1.0 586,617 + +0.2 586,617 + -1.1 586,617 + -0.6 586,617 + -0.1 586,617 + -0.2 586,617 + +0.0 586,618 - -1.1 586,618 - -0.5 586,618 - -1.0 586,618 - -0.2 586,618 - -0.0 586,618 - +0.0 586,618 - +0.7 586,618 - -1.3 586,618 - -0.5 586,618 - +0.2 586,618 - +0.0 586,618 - -1.2 586,618 - +0.4 586,618 - -1.7 586,618 - +1.0 586,618 - +0.0 586,653 + MPMX19_00571 0.13 +2.0 586,653 + MPMX19_00571 0.13 -0.2 586,653 + MPMX19_00571 0.13 -0.1 586,653 + MPMX19_00571 0.13 -0.8 586,653 + MPMX19_00571 0.13 +0.3 586,653 + MPMX19_00571 0.13 -0.1 586,653 + MPMX19_00571 0.13 -0.7 586,653 + MPMX19_00571 0.13 -0.7 586,653 + MPMX19_00571 0.13 -0.9 586,653 + MPMX19_00571 0.13 -0.1 586,653 + MPMX19_00571 0.13 +0.2 586,653 + MPMX19_00571 0.13 -1.2 586,653 + MPMX19_00571 0.13 +0.0 586,653 + MPMX19_00571 0.13 -0.8 586,654 - MPMX19_00571 0.13 -0.4 586,654 - MPMX19_00571 0.13 -0.6 586,654 - MPMX19_00571 0.13 +0.6 586,654 - MPMX19_00571 0.13 -2.0 586,654 - MPMX19_00571 0.13 -0.9 586,654 - MPMX19_00571 0.13 -2.3 586,654 - MPMX19_00571 0.13 -0.5 586,654 - MPMX19_00571 0.13 +0.0 586,654 - MPMX19_00571 0.13 -0.8 586,654 - MPMX19_00571 0.13 -0.2 586,654 - MPMX19_00571 0.13 -0.2 586,654 - MPMX19_00571 0.13 +0.0 586,654 - MPMX19_00571 0.13 +0.1 586,654 - MPMX19_00571 0.13 +0.1 586,654 - MPMX19_00571 0.13 +0.0 586,654 - MPMX19_00571 0.13 +1.0 586,654 - MPMX19_00571 0.13 -0.4 586,654 - MPMX19_00571 0.13 -0.7 586,654 - MPMX19_00571 0.13 +1.6 586,654 - MPMX19_00571 0.13 -0.2 586,654 - MPMX19_00571 0.13 -0.2 586,761 + MPMX19_00571 0.39 -0.4 586,883 + MPMX19_00571 0.69 +1.6 586,883 + MPMX19_00571 0.69 +0.2 586,883 + MPMX19_00571 0.69 -1.6 586,883 + MPMX19_00571 0.69 +1.3 586,883 + MPMX19_00571 0.69 -0.9 586,883 + MPMX19_00571 0.69 -1.3 586,883 + MPMX19_00571 0.69 +0.2 586,883 + MPMX19_00571 0.69 -2.2 586,883 + MPMX19_00571 0.69 -0.5 586,884 - MPMX19_00571 0.69 -0.4 586,884 - MPMX19_00571 0.69 -0.7 586,884 - MPMX19_00571 0.69 -0.5 586,884 - MPMX19_00571 0.69 +0.2 586,884 - MPMX19_00571 0.69 -1.5 586,911 + MPMX19_00571 0.75 +0.3 586,911 + MPMX19_00571 0.75 -0.1 586,911 + MPMX19_00571 0.75 +1.2 586,911 + MPMX19_00571 0.75 +0.9 586,911 + MPMX19_00571 0.75 -1.4 586,912 - MPMX19_00571 0.76 +0.4 586,912 - MPMX19_00571 0.76 -1.5 586,912 - MPMX19_00571 0.76 +0.0 586,912 - MPMX19_00571 0.76 +0.8 587,055 + -0.2 587,055 + +0.3 587,056 - +0.3 587,056 - +0.6 587,056 - -0.0 587,056 - -0.9 587,056 - -0.5 587,056 - +0.7 587,063 + -0.4 587,063 + +0.0 587,064 - -1.5 587,070 + -0.5 587,070 + +0.3 587,070 + +1.8 587,070 + -0.1 587,070 + -0.4 587,070 + -0.3 587,071 - -1.5 587,071 - +0.5 587,071 - -0.9 587,203 + +1.4 587,203 + +0.0 587,203 + -0.1 587,203 + -1.1 587,204 - -1.0 587,204 - -0.7 587,204 - -1.5 587,204 - -0.4 587,204 - -1.8 587,548 + MPMX19_00572 0.63 +0.6 587,548 + MPMX19_00572 0.63 -0.7 587,692 + MPMX19_00572 0.87 +2.0 587,692 + MPMX19_00572 0.87 +1.4 587,692 + MPMX19_00572 0.87 +0.4 587,692 + MPMX19_00572 0.87 -0.3 587,692 + MPMX19_00572 0.87 -1.4 587,692 + MPMX19_00572 0.87 -1.4 587,692 + MPMX19_00572 0.87 +0.0 587,692 + MPMX19_00572 0.87 -1.0 587,692 + MPMX19_00572 0.87 -0.8 587,692 + MPMX19_00572 0.87 -1.5 587,692 + MPMX19_00572 0.87 -0.4 587,693 - MPMX19_00572 0.87 -2.0 587,693 - MPMX19_00572 0.87 -1.8 587,693 - MPMX19_00572 0.87 +0.1 587,693 - MPMX19_00572 0.87 -0.5 587,693 - MPMX19_00572 0.87 -1.2 587,693 - MPMX19_00572 0.87 -1.0 587,693 - MPMX19_00572 0.87 +0.0 587,693 - MPMX19_00572 0.87 -2.0 587,872 + MPMX19_00573 0.12 +0.1 587,872 + MPMX19_00573 0.12 -1.8 587,872 + MPMX19_00573 0.12 -0.8 587,872 + MPMX19_00573 0.12 -0.1 587,872 + MPMX19_00573 0.12 -0.5 587,872 + MPMX19_00573 0.12 +0.1 587,872 + MPMX19_00573 0.12 +0.9 587,873 - MPMX19_00573 0.12 -1.0 587,873 - MPMX19_00573 0.12 +0.0 587,873 - MPMX19_00573 0.12 +0.4 587,873 - MPMX19_00573 0.12 -0.6 587,873 - MPMX19_00573 0.12 -0.6 587,873 - MPMX19_00573 0.12 +1.3 587,873 - MPMX19_00573 0.12 +0.2 587,873 - MPMX19_00573 0.12 -1.0 587,908 + MPMX19_00573 0.17 -1.1 587,908 + MPMX19_00573 0.17 -1.2 587,908 + MPMX19_00573 0.17 +0.4 587,908 + MPMX19_00573 0.17 -0.3 587,908 + MPMX19_00573 0.17 +0.3 587,908 + MPMX19_00573 0.17 -0.8 587,908 + MPMX19_00573 0.17 -0.0 587,908 + MPMX19_00573 0.17 -0.8 587,909 - MPMX19_00573 0.18 -0.4 587,909 - MPMX19_00573 0.18 -0.7 587,909 - MPMX19_00573 0.18 -0.2 587,909 - MPMX19_00573 0.18 +1.0 588,001 + MPMX19_00573 0.32 -0.2 588,001 + MPMX19_00573 0.32 -0.9 588,001 + MPMX19_00573 0.32 -2.0 588,002 - MPMX19_00573 0.32 -0.1 588,295 + MPMX19_00573 0.76 +1.3 588,296 - MPMX19_00573 0.76 -2.8 588,296 - MPMX19_00573 0.76 +0.8 588,296 - MPMX19_00573 0.76 -0.4 588,296 - MPMX19_00573 0.76 +0.4 588,296 - MPMX19_00573 0.76 +0.6 588,296 - MPMX19_00573 0.76 +0.6 588,375 + MPMX19_00573 0.88 +0.4 588,417 - +0.0 588,452 + -1.0 588,452 + -0.2 588,452 + -0.4 588,452 + -0.8 588,452 + -0.7 588,452 + +0.3 588,453 - -1.0 588,453 - -0.5 588,453 - +0.4 588,503 + -0.2 588,503 + -0.8 588,503 + -2.7 588,504 - -1.0 588,504 - +0.0 588,512 + -0.6 588,512 + -0.4 588,512 + -0.1 588,512 + -2.1 588,513 - -0.2 588,513 - -1.0 588,513 - +0.5 588,516 + -1.0 588,516 + +0.0 588,516 + -0.9 588,517 - +0.6 588,517 - -1.3 588,517 - -1.5 588,517 - -0.4 588,517 - +0.3 588,517 - -1.4 588,530 + +0.8 588,530 + -0.4 588,531 - -1.7 588,531 - -0.6 588,531 - +0.0 588,531 - +0.2 588,657 + -0.5 588,728 + MPMX19_00574 0.16 -1.1 588,728 + MPMX19_00574 0.16 -1.8 588,728 + MPMX19_00574 0.16 -0.5 588,772 + MPMX19_00574 0.21 -0.2 588,772 + MPMX19_00574 0.21 +0.0 588,772 + MPMX19_00574 0.21 -0.9 588,772 + MPMX19_00574 0.21 -0.6 588,772 + MPMX19_00574 0.21 -1.6
Or see this region's nucleotide sequence