Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00542

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00540 and MPMX19_00541 are separated by 115 nucleotidesMPMX19_00541 and MPMX19_00542 are separated by 86 nucleotidesMPMX19_00542 and MPMX19_00543 overlap by 11 nucleotidesMPMX19_00543 and MPMX19_00544 overlap by 4 nucleotides MPMX19_00540: MPMX19_00540 - Tungstate-binding protein TupA, at 556,136 to 556,984 _00540 MPMX19_00541: MPMX19_00541 - Tungstate uptake system permease protein TupB, at 557,100 to 557,801 _00541 MPMX19_00542: MPMX19_00542 - Sulfur carrier protein FdhD, at 557,888 to 558,769 _00542 MPMX19_00543: MPMX19_00543 - Molybdenum cofactor guanylyltransferase, at 558,759 to 559,397 _00543 MPMX19_00544: MPMX19_00544 - hypothetical protein, at 559,394 to 559,903 _00544 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2at 557.023 kb on + strandat 557.023 kb on + strandat 557.024 kb on - strandat 557.024 kb on - strandat 557.024 kb on - strandat 557.024 kb on - strandat 557.413 kb on + strand, within MPMX19_00541at 557.413 kb on + strand, within MPMX19_00541at 557.413 kb on + strand, within MPMX19_00541at 557.413 kb on + strand, within MPMX19_00541at 557.414 kb on - strand, within MPMX19_00541at 557.414 kb on - strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.824 kb on + strandat 557.824 kb on + strandat 557.825 kb on - strandat 557.910 kb on + strandat 557.910 kb on + strandat 557.910 kb on + strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strandat 558.017 kb on + strand, within MPMX19_00542at 558.017 kb on + strand, within MPMX19_00542at 558.017 kb on + strand, within MPMX19_00542at 558.017 kb on + strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.062 kb on + strand, within MPMX19_00542at 558.062 kb on + strand, within MPMX19_00542at 558.063 kb on - strand, within MPMX19_00542at 558.086 kb on + strand, within MPMX19_00542at 558.086 kb on + strand, within MPMX19_00542at 558.087 kb on - strand, within MPMX19_00542at 558.087 kb on - strand, within MPMX19_00542at 558.087 kb on - strand, within MPMX19_00542at 558.087 kb on - strand, within MPMX19_00542at 558.108 kb on + strand, within MPMX19_00542at 558.108 kb on + strand, within MPMX19_00542at 558.108 kb on + strand, within MPMX19_00542at 558.109 kb on - strand, within MPMX19_00542at 558.109 kb on - strand, within MPMX19_00542at 558.109 kb on - strand, within MPMX19_00542at 558.109 kb on - strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.509 kb on + strand, within MPMX19_00542at 558.509 kb on + strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.626 kb on - strand, within MPMX19_00542at 558.626 kb on - strand, within MPMX19_00542at 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 559.205 kb on + strand, within MPMX19_00543at 559.635 kb on - strand, within MPMX19_00544at 559.635 kb on - strand, within MPMX19_00544at 559.751 kb on + strand, within MPMX19_00544at 559.752 kb on - strand, within MPMX19_00544at 559.752 kb on - strand, within MPMX19_00544

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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557,023 + +0.4
557,023 + -0.2
557,024 - -2.0
557,024 - -0.1
557,024 - +1.4
557,024 - +0.0
557,413 + MPMX19_00541 0.45 +0.4
557,413 + MPMX19_00541 0.45 -0.1
557,413 + MPMX19_00541 0.45 -0.1
557,413 + MPMX19_00541 0.45 -2.6
557,414 - MPMX19_00541 0.45 +0.6
557,414 - MPMX19_00541 0.45 -0.2
557,557 + MPMX19_00541 0.65 +0.4
557,557 + MPMX19_00541 0.65 +1.8
557,557 + MPMX19_00541 0.65 -0.4
557,557 + MPMX19_00541 0.65 -0.5
557,557 + MPMX19_00541 0.65 +0.1
557,557 + MPMX19_00541 0.65 +0.8
557,557 + MPMX19_00541 0.65 -1.1
557,557 + MPMX19_00541 0.65 +0.3
557,557 + MPMX19_00541 0.65 -0.2
557,557 + MPMX19_00541 0.65 -0.7
557,558 - MPMX19_00541 0.65 -1.5
557,558 - MPMX19_00541 0.65 +0.4
557,558 - MPMX19_00541 0.65 +0.8
557,558 - MPMX19_00541 0.65 -0.6
557,558 - MPMX19_00541 0.65 +0.4
557,558 - MPMX19_00541 0.65 +0.6
557,558 - MPMX19_00541 0.65 -0.5
557,558 - MPMX19_00541 0.65 -1.4
557,558 - MPMX19_00541 0.65 -0.7
557,558 - MPMX19_00541 0.65 -0.5
557,558 - MPMX19_00541 0.65 +0.4
557,558 - MPMX19_00541 0.65 -1.8
557,824 + +1.3
557,824 + -0.4
557,825 - -0.4
557,910 + +1.0
557,910 + +0.6
557,910 + -0.1
557,911 - -0.7
557,911 - -0.4
557,911 - -1.0
557,911 - -0.7
557,911 - -1.1
558,017 + MPMX19_00542 0.15 -1.7
558,017 + MPMX19_00542 0.15 -0.9
558,017 + MPMX19_00542 0.15 -1.3
558,017 + MPMX19_00542 0.15 +0.1
558,018 - MPMX19_00542 0.15 +0.0
558,018 - MPMX19_00542 0.15 -1.3
558,018 - MPMX19_00542 0.15 +0.8
558,018 - MPMX19_00542 0.15 -0.8
558,018 - MPMX19_00542 0.15 +0.2
558,018 - MPMX19_00542 0.15 -1.0
558,018 - MPMX19_00542 0.15 +0.5
558,062 + MPMX19_00542 0.20 -0.5
558,062 + MPMX19_00542 0.20 -1.1
558,063 - MPMX19_00542 0.20 +0.2
558,086 + MPMX19_00542 0.22 +0.0
558,086 + MPMX19_00542 0.22 -2.4
558,087 - MPMX19_00542 0.23 -0.1
558,087 - MPMX19_00542 0.23 +1.3
558,087 - MPMX19_00542 0.23 -0.2
558,087 - MPMX19_00542 0.23 +0.3
558,108 + MPMX19_00542 0.25 +0.6
558,108 + MPMX19_00542 0.25 +0.4
558,108 + MPMX19_00542 0.25 -0.2
558,109 - MPMX19_00542 0.25 +0.6
558,109 - MPMX19_00542 0.25 -0.2
558,109 - MPMX19_00542 0.25 +0.6
558,109 - MPMX19_00542 0.25 -0.0
558,320 + MPMX19_00542 0.49 -0.1
558,320 + MPMX19_00542 0.49 +0.2
558,320 + MPMX19_00542 0.49 -0.7
558,320 + MPMX19_00542 0.49 +0.3
558,320 + MPMX19_00542 0.49 -0.7
558,320 + MPMX19_00542 0.49 +0.3
558,321 - MPMX19_00542 0.49 +0.1
558,321 - MPMX19_00542 0.49 -0.5
558,321 - MPMX19_00542 0.49 +0.8
558,321 - MPMX19_00542 0.49 -1.1
558,321 - MPMX19_00542 0.49 +0.1
558,321 - MPMX19_00542 0.49 +0.1
558,321 - MPMX19_00542 0.49 +1.1
558,321 - MPMX19_00542 0.49 -0.5
558,321 - MPMX19_00542 0.49 +0.4
558,321 - MPMX19_00542 0.49 -1.0
558,321 - MPMX19_00542 0.49 -1.1
558,359 + MPMX19_00542 0.53 +0.0
558,359 + MPMX19_00542 0.53 -1.3
558,359 + MPMX19_00542 0.53 +0.6
558,359 + MPMX19_00542 0.53 -1.7
558,359 + MPMX19_00542 0.53 -0.7
558,359 + MPMX19_00542 0.53 -0.4
558,359 + MPMX19_00542 0.53 +0.8
558,360 - MPMX19_00542 0.54 +2.2
558,360 - MPMX19_00542 0.54 -0.4
558,360 - MPMX19_00542 0.54 -0.4
558,360 - MPMX19_00542 0.54 +0.4
558,360 - MPMX19_00542 0.54 +0.5
558,360 - MPMX19_00542 0.54 -0.8
558,360 - MPMX19_00542 0.54 -1.0
558,360 - MPMX19_00542 0.54 -0.5
558,360 - MPMX19_00542 0.54 -0.9
558,360 - MPMX19_00542 0.54 -1.0
558,360 - MPMX19_00542 0.54 -0.5
558,360 - MPMX19_00542 0.54 -1.4
558,419 + MPMX19_00542 0.60 -0.4
558,419 + MPMX19_00542 0.60 -1.4
558,419 + MPMX19_00542 0.60 -0.5
558,419 + MPMX19_00542 0.60 -1.8
558,419 + MPMX19_00542 0.60 -0.5
558,419 + MPMX19_00542 0.60 -0.6
558,419 + MPMX19_00542 0.60 -0.6
558,419 + MPMX19_00542 0.60 -0.4
558,419 + MPMX19_00542 0.60 -1.0
558,419 + MPMX19_00542 0.60 -0.6
558,419 + MPMX19_00542 0.60 -0.4
558,419 + MPMX19_00542 0.60 -0.1
558,419 + MPMX19_00542 0.60 -1.0
558,419 + MPMX19_00542 0.60 +0.1
558,419 + MPMX19_00542 0.60 -0.3
558,419 + MPMX19_00542 0.60 -1.1
558,419 + MPMX19_00542 0.60 +0.5
558,419 + MPMX19_00542 0.60 -1.5
558,419 + MPMX19_00542 0.60 -1.4
558,419 + MPMX19_00542 0.60 +0.8
558,419 + MPMX19_00542 0.60 -1.0
558,420 - MPMX19_00542 0.60 -1.5
558,420 - MPMX19_00542 0.60 -0.9
558,420 - MPMX19_00542 0.60 -0.2
558,420 - MPMX19_00542 0.60 +0.1
558,420 - MPMX19_00542 0.60 +1.0
558,420 - MPMX19_00542 0.60 +1.4
558,420 - MPMX19_00542 0.60 +0.3
558,420 - MPMX19_00542 0.60 -0.5
558,420 - MPMX19_00542 0.60 -0.2
558,420 - MPMX19_00542 0.60 +0.8
558,420 - MPMX19_00542 0.60 -1.8
558,420 - MPMX19_00542 0.60 -0.3
558,420 - MPMX19_00542 0.60 +0.9
558,420 - MPMX19_00542 0.60 -0.5
558,420 - MPMX19_00542 0.60 -1.7
558,420 - MPMX19_00542 0.60 -1.0
558,420 - MPMX19_00542 0.60 +0.2
558,467 + MPMX19_00542 0.66 -1.0
558,467 + MPMX19_00542 0.66 -1.2
558,467 + MPMX19_00542 0.66 +1.1
558,467 + MPMX19_00542 0.66 +0.3
558,467 + MPMX19_00542 0.66 +2.2
558,468 - MPMX19_00542 0.66 -0.2
558,468 - MPMX19_00542 0.66 -0.1
558,468 - MPMX19_00542 0.66 +0.0
558,468 - MPMX19_00542 0.66 +0.8
558,468 - MPMX19_00542 0.66 -0.7
558,468 - MPMX19_00542 0.66 -1.0
558,468 - MPMX19_00542 0.66 +2.1
558,468 - MPMX19_00542 0.66 +0.2
558,468 - MPMX19_00542 0.66 +0.1
558,468 - MPMX19_00542 0.66 +1.2
558,468 - MPMX19_00542 0.66 -2.1
558,509 + MPMX19_00542 0.70 -0.9
558,509 + MPMX19_00542 0.70 -0.5
558,510 - MPMX19_00542 0.71 -1.0
558,510 - MPMX19_00542 0.71 -1.0
558,510 - MPMX19_00542 0.71 -0.6
558,626 - MPMX19_00542 0.84 -0.8
558,626 - MPMX19_00542 0.84 -0.2
558,767 + +0.5
558,767 + +1.0
558,767 + -0.8
558,767 + -0.7
558,767 + +0.2
558,767 + +0.4
558,767 + -0.5
558,767 + +0.4
558,767 + +0.6
558,768 - -1.8
558,768 - -0.7
558,768 - -1.1
558,768 - -1.1
558,768 - -2.3
558,768 - -2.3
558,768 - +1.0
558,993 + MPMX19_00543 0.37 +0.6
558,993 + MPMX19_00543 0.37 -0.4
558,993 + MPMX19_00543 0.37 +1.6
558,993 + MPMX19_00543 0.37 -0.4
558,994 - MPMX19_00543 0.37 -2.0
558,994 - MPMX19_00543 0.37 -0.1
558,994 - MPMX19_00543 0.37 +0.4
559,205 + MPMX19_00543 0.70 +0.4
559,635 - MPMX19_00544 0.47 +0.1
559,635 - MPMX19_00544 0.47 +1.3
559,751 + MPMX19_00544 0.70 +0.1
559,752 - MPMX19_00544 0.70 +0.1
559,752 - MPMX19_00544 0.70 -1.8

Or see this region's nucleotide sequence