Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00503 and MPMX19_00504 are separated by 8 nucleotides MPMX19_00504 and MPMX19_00505 are separated by 343 nucleotides MPMX19_00505 and MPMX19_00506 are separated by 330 nucleotides
MPMX19_00503: MPMX19_00503 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 505,462 to 507,777
_00503
MPMX19_00504: MPMX19_00504 - ATP-dependent Clp protease adapter protein ClpS, at 507,786 to 508,112
_00504
MPMX19_00505: MPMX19_00505 - hypothetical protein, at 508,456 to 508,935
_00505
MPMX19_00506: MPMX19_00506 - hypothetical protein, at 509,266 to 509,790
_00506
Position (kb) 508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 507.597 kb on - strand at 507.707 kb on + strand at 507.707 kb on + strand at 507.708 kb on - strand at 507.787 kb on + strand at 507.787 kb on + strand at 507.788 kb on - strand at 507.799 kb on - strand at 507.874 kb on + strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.997 kb on + strand, within MPMX19_00504 at 507.997 kb on + strand, within MPMX19_00504 at 507.998 kb on - strand, within MPMX19_00504 at 507.998 kb on - strand, within MPMX19_00504 at 508.024 kb on + strand, within MPMX19_00504 at 508.024 kb on + strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.076 kb on + strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.157 kb on + strand at 508.157 kb on + strand at 508.157 kb on + strand at 508.157 kb on + strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.244 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.252 kb on - strand at 508.252 kb on - strand at 508.252 kb on - strand at 508.254 kb on + strand at 508.254 kb on + strand at 508.254 kb on + strand at 508.255 kb on - strand at 508.298 kb on + strand at 508.299 kb on - strand at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.939 kb on + strand at 508.939 kb on + strand at 508.939 kb on + strand at 508.939 kb on + strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.960 kb on - strand at 509.049 kb on + strand at 509.066 kb on + strand at 509.077 kb on + strand at 509.516 kb on + strand, within MPMX19_00506 at 509.517 kb on - strand, within MPMX19_00506 at 509.517 kb on - strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.621 kb on + strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.622 kb on - strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.732 kb on + strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.733 kb on - strand, within MPMX19_00506 at 509.892 kb on + strand at 509.892 kb on + strand at 509.892 kb on + strand at 509.893 kb on - strand at 509.893 kb on - strand at 509.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 507,597 - -0.2 507,707 + -1.8 507,707 + -0.6 507,708 - -0.7 507,787 + -0.2 507,787 + -0.1 507,788 - -0.5 507,799 - +0.4 507,874 + MPMX19_00504 0.27 -0.2 507,875 - MPMX19_00504 0.27 -1.1 507,875 - MPMX19_00504 0.27 -0.5 507,875 - MPMX19_00504 0.27 +0.8 507,875 - MPMX19_00504 0.27 +0.0 507,997 + MPMX19_00504 0.65 -1.5 507,997 + MPMX19_00504 0.65 -1.1 507,998 - MPMX19_00504 0.65 -1.4 507,998 - MPMX19_00504 0.65 -1.0 508,024 + MPMX19_00504 0.73 +0.1 508,024 + MPMX19_00504 0.73 -1.0 508,025 - MPMX19_00504 0.73 -0.4 508,025 - MPMX19_00504 0.73 -0.4 508,025 - MPMX19_00504 0.73 -0.4 508,076 + MPMX19_00504 0.89 -1.1 508,077 - MPMX19_00504 0.89 -0.6 508,077 - MPMX19_00504 0.89 -0.7 508,077 - MPMX19_00504 0.89 -1.5 508,077 - MPMX19_00504 0.89 -0.1 508,077 - MPMX19_00504 0.89 +0.7 508,077 - MPMX19_00504 0.89 -0.2 508,077 - MPMX19_00504 0.89 -1.6 508,157 + -1.2 508,157 + +0.5 508,157 + -1.0 508,157 + -0.4 508,158 - +0.3 508,158 - -0.5 508,158 - -1.9 508,158 - -0.5 508,158 - -1.1 508,158 - -0.2 508,158 - +1.0 508,158 - -0.7 508,158 - -0.2 508,158 - -2.1 508,244 + -1.8 508,251 + -1.0 508,251 + -1.8 508,251 + -0.3 508,251 + +0.6 508,252 - -1.7 508,252 - -0.9 508,252 - -0.7 508,254 + +0.0 508,254 + -0.1 508,254 + -0.2 508,255 - -0.2 508,298 + -0.1 508,299 - -0.6 508,604 + MPMX19_00505 0.31 -1.0 508,604 + MPMX19_00505 0.31 -0.8 508,604 + MPMX19_00505 0.31 +1.6 508,604 + MPMX19_00505 0.31 -1.1 508,604 + MPMX19_00505 0.31 +0.5 508,604 + MPMX19_00505 0.31 -0.2 508,604 + MPMX19_00505 0.31 +0.5 508,604 + MPMX19_00505 0.31 -0.6 508,604 + MPMX19_00505 0.31 -0.4 508,605 - MPMX19_00505 0.31 -2.5 508,605 - MPMX19_00505 0.31 -2.2 508,605 - MPMX19_00505 0.31 +0.4 508,605 - MPMX19_00505 0.31 -0.2 508,605 - MPMX19_00505 0.31 -1.1 508,605 - MPMX19_00505 0.31 -0.3 508,605 - MPMX19_00505 0.31 -1.8 508,605 - MPMX19_00505 0.31 +1.6 508,605 - MPMX19_00505 0.31 -0.5 508,605 - MPMX19_00505 0.31 -1.5 508,605 - MPMX19_00505 0.31 +0.0 508,802 + MPMX19_00505 0.72 -0.8 508,802 + MPMX19_00505 0.72 -0.1 508,802 + MPMX19_00505 0.72 +0.0 508,802 + MPMX19_00505 0.72 -1.1 508,802 + MPMX19_00505 0.72 +0.0 508,802 + MPMX19_00505 0.72 +0.4 508,802 + MPMX19_00505 0.72 -0.5 508,802 + MPMX19_00505 0.72 -0.7 508,802 + MPMX19_00505 0.72 -1.3 508,802 + MPMX19_00505 0.72 +2.2 508,802 + MPMX19_00505 0.72 -2.1 508,802 + MPMX19_00505 0.72 -0.2 508,802 + MPMX19_00505 0.72 -1.7 508,802 + MPMX19_00505 0.72 -0.1 508,802 + MPMX19_00505 0.72 +0.5 508,802 + MPMX19_00505 0.72 +1.1 508,802 + MPMX19_00505 0.72 -1.7 508,803 - MPMX19_00505 0.72 -0.1 508,803 - MPMX19_00505 0.72 -0.7 508,803 - MPMX19_00505 0.72 -1.9 508,803 - MPMX19_00505 0.72 -1.4 508,803 - MPMX19_00505 0.72 -1.4 508,803 - MPMX19_00505 0.72 -0.2 508,803 - MPMX19_00505 0.72 -0.5 508,803 - MPMX19_00505 0.72 -0.5 508,803 - MPMX19_00505 0.72 +0.6 508,803 - MPMX19_00505 0.72 -0.4 508,939 + +0.0 508,939 + -0.1 508,939 + -2.0 508,939 + -0.7 508,940 - -0.5 508,940 - -0.0 508,940 - +0.1 508,940 - +0.3 508,940 - -0.4 508,940 - +0.6 508,957 + +0.4 508,957 + -0.5 508,957 + -0.1 508,957 + -2.0 508,957 + +0.0 508,957 + -1.3 508,957 + +1.2 508,957 + +0.2 508,957 + +0.9 508,957 + +1.2 508,957 + -2.5 508,957 + -2.0 508,957 + -1.5 508,957 + +1.4 508,957 + +0.8 508,957 + -0.1 508,957 + -0.6 508,957 + -1.1 508,957 + +0.5 508,957 + -0.9 508,957 + -1.2 508,957 + +0.2 508,957 + +0.6 508,957 + -0.7 508,958 - -0.1 508,958 - -1.8 508,958 - -0.8 508,958 - +0.6 508,958 - -1.7 508,958 - +0.8 508,958 - +0.3 508,958 - -1.0 508,958 - +0.5 508,958 - -0.2 508,958 - -0.8 508,958 - +1.4 508,958 - -1.5 508,958 - +0.7 508,958 - -2.2 508,958 - +0.8 508,958 - +0.4 508,958 - -0.3 508,958 - +0.6 508,958 - -0.7 508,958 - +0.4 508,958 - +1.6 508,959 + +0.6 508,959 + -1.8 508,959 + +0.0 508,959 + +0.9 508,960 - +0.8 509,049 + +0.0 509,066 + -0.2 509,077 + -0.5 509,516 + MPMX19_00506 0.48 +1.0 509,517 - MPMX19_00506 0.48 +0.9 509,517 - MPMX19_00506 0.48 +0.6 509,621 + MPMX19_00506 0.68 -0.4 509,621 + MPMX19_00506 0.68 -1.7 509,621 + MPMX19_00506 0.68 -0.2 509,621 + MPMX19_00506 0.68 +0.5 509,621 + MPMX19_00506 0.68 -0.3 509,621 + MPMX19_00506 0.68 +0.0 509,621 + MPMX19_00506 0.68 +0.6 509,621 + MPMX19_00506 0.68 +1.0 509,621 + MPMX19_00506 0.68 +0.6 509,621 + MPMX19_00506 0.68 +1.2 509,621 + MPMX19_00506 0.68 +0.4 509,621 + MPMX19_00506 0.68 -1.4 509,621 + MPMX19_00506 0.68 +0.4 509,621 + MPMX19_00506 0.68 -0.7 509,621 + MPMX19_00506 0.68 -1.5 509,622 - MPMX19_00506 0.68 -0.7 509,622 - MPMX19_00506 0.68 -0.2 509,622 - MPMX19_00506 0.68 -0.4 509,622 - MPMX19_00506 0.68 -0.1 509,622 - MPMX19_00506 0.68 -0.5 509,622 - MPMX19_00506 0.68 -0.6 509,622 - MPMX19_00506 0.68 +0.8 509,622 - MPMX19_00506 0.68 -0.2 509,622 - MPMX19_00506 0.68 -1.4 509,622 - MPMX19_00506 0.68 +0.0 509,622 - MPMX19_00506 0.68 -0.2 509,622 - MPMX19_00506 0.68 +0.4 509,622 - MPMX19_00506 0.68 +0.1 509,622 - MPMX19_00506 0.68 -0.1 509,622 - MPMX19_00506 0.68 +0.0 509,622 - MPMX19_00506 0.68 +0.2 509,622 - MPMX19_00506 0.68 +0.2 509,622 - MPMX19_00506 0.68 -1.4 509,622 - MPMX19_00506 0.68 -0.2 509,732 + MPMX19_00506 0.89 -1.5 509,732 + MPMX19_00506 0.89 +0.3 509,732 + MPMX19_00506 0.89 -0.2 509,732 + MPMX19_00506 0.89 -1.2 509,732 + MPMX19_00506 0.89 +0.2 509,732 + MPMX19_00506 0.89 +0.0 509,732 + MPMX19_00506 0.89 -0.2 509,732 + MPMX19_00506 0.89 +0.3 509,732 + MPMX19_00506 0.89 -1.3 509,732 + MPMX19_00506 0.89 +0.9 509,732 + MPMX19_00506 0.89 -0.4 509,732 + MPMX19_00506 0.89 -0.1 509,732 + MPMX19_00506 0.89 +0.2 509,732 + MPMX19_00506 0.89 +0.8 509,732 + MPMX19_00506 0.89 -0.8 509,732 + MPMX19_00506 0.89 -0.2 509,732 + MPMX19_00506 0.89 -1.0 509,732 + MPMX19_00506 0.89 -0.4 509,732 + MPMX19_00506 0.89 -0.2 509,732 + MPMX19_00506 0.89 -0.1 509,732 + MPMX19_00506 0.89 +0.0 509,732 + MPMX19_00506 0.89 -0.4 509,732 + MPMX19_00506 0.89 -1.0 509,732 + MPMX19_00506 0.89 -1.7 509,733 - MPMX19_00506 0.89 -2.3 509,733 - MPMX19_00506 0.89 +0.8 509,733 - MPMX19_00506 0.89 -2.4 509,733 - MPMX19_00506 0.89 +0.4 509,733 - MPMX19_00506 0.89 +0.3 509,733 - MPMX19_00506 0.89 -0.8 509,733 - MPMX19_00506 0.89 +1.0 509,733 - MPMX19_00506 0.89 -0.0 509,733 - MPMX19_00506 0.89 +0.1 509,733 - MPMX19_00506 0.89 +0.0 509,733 - MPMX19_00506 0.89 -0.4 509,733 - MPMX19_00506 0.89 -0.6 509,733 - MPMX19_00506 0.89 +0.8 509,733 - MPMX19_00506 0.89 -1.0 509,733 - MPMX19_00506 0.89 -3.6 509,892 + -0.1 509,892 + -1.2 509,892 + +0.2 509,893 - +0.4 509,893 - +0.2 509,893 - -2.5
Or see this region's nucleotide sequence