Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00473 and MPMX19_00474 are separated by 193 nucleotides MPMX19_00474 and MPMX19_00475 are separated by 165 nucleotides MPMX19_00475 and MPMX19_00476 are separated by 3 nucleotides
MPMX19_00473: MPMX19_00473 - hypothetical protein, at 471,560 to 472,072
_00473
MPMX19_00474: MPMX19_00474 - N-ethylmaleimide reductase, at 472,266 to 473,396
_00474
MPMX19_00475: MPMX19_00475 - hypothetical protein, at 473,562 to 474,224
_00475
MPMX19_00476: MPMX19_00476 - Protein RarD, at 474,228 to 475,154
_00476
Position (kb) 472
473
474 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 471.301 kb on + strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.737 kb on + strand, within MPMX19_00473 at 471.737 kb on + strand, within MPMX19_00473 at 471.737 kb on + strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.746 kb on + strand, within MPMX19_00473 at 471.747 kb on - strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 472.087 kb on + strand at 472.303 kb on + strand at 472.303 kb on + strand at 472.303 kb on + strand at 472.304 kb on - strand at 472.304 kb on - strand at 472.304 kb on - strand at 472.324 kb on + strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.498 kb on + strand, within MPMX19_00474 at 472.498 kb on + strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.826 kb on - strand, within MPMX19_00474 at 472.826 kb on - strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 473.167 kb on + strand, within MPMX19_00474 at 473.168 kb on - strand, within MPMX19_00474 at 473.168 kb on - strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.239 kb on + strand, within MPMX19_00474 at 473.239 kb on + strand, within MPMX19_00474 at 473.239 kb on + strand, within MPMX19_00474 at 473.239 kb on + strand, within MPMX19_00474 at 473.240 kb on - strand, within MPMX19_00474 at 473.240 kb on - strand, within MPMX19_00474 at 473.240 kb on - strand, within MPMX19_00474 at 473.240 kb on - strand, within MPMX19_00474 at 473.405 kb on + strand at 473.405 kb on + strand at 473.406 kb on - strand at 473.406 kb on - strand at 473.422 kb on + strand at 473.422 kb on + strand at 473.422 kb on + strand at 473.423 kb on - strand at 473.423 kb on - strand at 473.450 kb on - strand at 473.461 kb on + strand at 473.462 kb on - strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.496 kb on - strand at 473.496 kb on - strand at 473.503 kb on + strand at 473.503 kb on + strand at 473.503 kb on + strand at 473.503 kb on + strand at 473.503 kb on + strand at 473.504 kb on - strand at 473.504 kb on - strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.508 kb on - strand at 473.508 kb on - strand at 473.510 kb on + strand at 473.511 kb on - strand at 473.522 kb on + strand at 473.522 kb on + strand at 473.523 kb on - strand at 473.772 kb on + strand, within MPMX19_00475 at 473.772 kb on + strand, within MPMX19_00475 at 473.772 kb on + strand, within MPMX19_00475 at 473.773 kb on - strand, within MPMX19_00475 at 473.773 kb on - strand, within MPMX19_00475 at 473.773 kb on - strand, within MPMX19_00475 at 473.773 kb on - strand, within MPMX19_00475 at 473.817 kb on + strand, within MPMX19_00475 at 474.229 kb on + strand at 474.229 kb on + strand at 474.229 kb on + strand at 474.229 kb on + strand at 474.229 kb on + strand at 474.230 kb on - strand at 474.230 kb on - strand at 474.230 kb on - strand at 474.355 kb on + strand, within MPMX19_00476 at 474.355 kb on + strand, within MPMX19_00476 at 474.355 kb on + strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 471,301 + -1.7 471,302 - -1.4 471,302 - +0.4 471,302 - -0.1 471,302 - -0.4 471,490 + -1.2 471,490 + -0.1 471,490 + -0.1 471,490 + +0.6 471,490 + -0.9 471,490 + -1.3 471,491 - +0.1 471,491 - +0.2 471,491 - -1.3 471,491 - +0.5 471,491 - -0.9 471,491 - +0.6 471,491 - -0.7 471,491 - -0.9 471,491 - +0.4 471,737 + MPMX19_00473 0.35 +0.1 471,737 + MPMX19_00473 0.35 -1.9 471,737 + MPMX19_00473 0.35 -1.2 471,738 - MPMX19_00473 0.35 -0.1 471,738 - MPMX19_00473 0.35 +0.2 471,738 - MPMX19_00473 0.35 +0.8 471,746 + MPMX19_00473 0.36 +0.1 471,747 - MPMX19_00473 0.36 +0.2 471,755 + MPMX19_00473 0.38 +0.4 471,755 + MPMX19_00473 0.38 +0.5 471,755 + MPMX19_00473 0.38 -0.4 471,755 + MPMX19_00473 0.38 -1.9 471,755 + MPMX19_00473 0.38 -0.1 471,755 + MPMX19_00473 0.38 +0.1 471,756 - MPMX19_00473 0.38 +0.3 471,756 - MPMX19_00473 0.38 -0.9 471,756 - MPMX19_00473 0.38 -0.9 472,087 + -0.6 472,303 + -0.4 472,303 + -0.9 472,303 + -1.1 472,304 - -1.5 472,304 - +0.2 472,304 - -0.1 472,324 + -0.6 472,325 - -0.9 472,325 - -0.7 472,325 - -0.2 472,327 + +0.3 472,327 + +1.1 472,327 + -0.1 472,327 + -1.7 472,327 + -0.2 472,327 + +1.0 472,327 + -0.4 472,327 + -0.4 472,327 + -0.5 472,327 + -0.7 472,327 + -0.8 472,327 + -1.4 472,327 + -0.1 472,327 + +0.4 472,327 + +0.3 472,327 + +0.4 472,327 + -0.7 472,327 + +0.2 472,327 + +1.6 472,327 + -0.6 472,327 + -0.4 472,327 + -1.7 472,327 + -2.4 472,327 + -1.3 472,327 + -0.0 472,327 + +0.1 472,327 + -0.8 472,327 + -1.2 472,328 - +0.3 472,328 - -0.9 472,328 - -2.6 472,328 - +0.1 472,328 - -0.4 472,328 - -1.4 472,328 - -0.7 472,328 - -1.6 472,328 - +0.1 472,328 - +0.2 472,328 - +0.7 472,328 - -0.9 472,328 - -1.1 472,328 - +0.9 472,328 - +0.1 472,328 - -0.1 472,328 - +0.3 472,328 - -0.1 472,328 - +0.5 472,328 - -0.0 472,328 - -0.5 472,328 - -0.0 472,328 - -1.7 472,328 - +1.3 472,328 - -0.2 472,328 - -1.2 472,328 - -0.4 472,328 - -0.1 472,328 - -2.3 472,328 - -0.3 472,498 + MPMX19_00474 0.21 +1.3 472,498 + MPMX19_00474 0.21 -0.2 472,499 - MPMX19_00474 0.21 -1.0 472,499 - MPMX19_00474 0.21 -0.2 472,499 - MPMX19_00474 0.21 -2.9 472,499 - MPMX19_00474 0.21 -0.2 472,499 - MPMX19_00474 0.21 +0.8 472,585 + MPMX19_00474 0.28 -0.4 472,585 + MPMX19_00474 0.28 +0.2 472,585 + MPMX19_00474 0.28 +0.2 472,585 + MPMX19_00474 0.28 -1.4 472,585 + MPMX19_00474 0.28 +0.6 472,585 + MPMX19_00474 0.28 -0.2 472,585 + MPMX19_00474 0.28 -1.1 472,585 + MPMX19_00474 0.28 -1.2 472,585 + MPMX19_00474 0.28 -0.2 472,586 - MPMX19_00474 0.28 -1.0 472,586 - MPMX19_00474 0.28 +0.1 472,586 - MPMX19_00474 0.28 +1.6 472,586 - MPMX19_00474 0.28 +0.6 472,586 - MPMX19_00474 0.28 -0.5 472,586 - MPMX19_00474 0.28 +0.1 472,586 - MPMX19_00474 0.28 -1.3 472,774 + MPMX19_00474 0.45 -0.4 472,774 + MPMX19_00474 0.45 -0.4 472,774 + MPMX19_00474 0.45 -1.1 472,775 - MPMX19_00474 0.45 -1.1 472,775 - MPMX19_00474 0.45 +0.1 472,775 - MPMX19_00474 0.45 -1.1 472,775 - MPMX19_00474 0.45 +0.1 472,775 - MPMX19_00474 0.45 -0.4 472,825 + MPMX19_00474 0.49 -1.5 472,825 + MPMX19_00474 0.49 +0.4 472,825 + MPMX19_00474 0.49 -1.4 472,825 + MPMX19_00474 0.49 +0.0 472,826 - MPMX19_00474 0.50 +0.1 472,826 - MPMX19_00474 0.50 +0.6 472,975 + MPMX19_00474 0.63 -0.7 472,975 + MPMX19_00474 0.63 -0.8 472,975 + MPMX19_00474 0.63 +0.4 472,975 + MPMX19_00474 0.63 -0.4 472,975 + MPMX19_00474 0.63 +0.4 472,975 + MPMX19_00474 0.63 +0.6 472,975 + MPMX19_00474 0.63 +0.8 472,975 + MPMX19_00474 0.63 +1.3 472,975 + MPMX19_00474 0.63 -2.1 472,975 + MPMX19_00474 0.63 -0.4 472,975 + MPMX19_00474 0.63 -0.5 472,975 + MPMX19_00474 0.63 -0.4 472,976 - MPMX19_00474 0.63 -0.4 472,976 - MPMX19_00474 0.63 +1.6 472,976 - MPMX19_00474 0.63 -1.2 472,976 - MPMX19_00474 0.63 +1.0 472,976 - MPMX19_00474 0.63 +0.7 472,976 - MPMX19_00474 0.63 -0.4 472,976 - MPMX19_00474 0.63 -1.5 472,976 - MPMX19_00474 0.63 +1.0 472,976 - MPMX19_00474 0.63 +0.2 472,976 - MPMX19_00474 0.63 +0.1 472,976 - MPMX19_00474 0.63 +0.4 472,976 - MPMX19_00474 0.63 +1.0 473,167 + MPMX19_00474 0.80 +1.2 473,168 - MPMX19_00474 0.80 +1.6 473,168 - MPMX19_00474 0.80 +0.1 473,236 + MPMX19_00474 0.86 -1.1 473,236 + MPMX19_00474 0.86 -0.1 473,236 + MPMX19_00474 0.86 -1.8 473,236 + MPMX19_00474 0.86 -1.2 473,236 + MPMX19_00474 0.86 -0.2 473,236 + MPMX19_00474 0.86 +0.9 473,237 - MPMX19_00474 0.86 -0.7 473,237 - MPMX19_00474 0.86 +0.3 473,237 - MPMX19_00474 0.86 -0.1 473,237 - MPMX19_00474 0.86 -0.5 473,237 - MPMX19_00474 0.86 -2.6 473,237 - MPMX19_00474 0.86 -0.2 473,237 - MPMX19_00474 0.86 -0.6 473,237 - MPMX19_00474 0.86 -0.4 473,237 - MPMX19_00474 0.86 +0.4 473,239 + MPMX19_00474 0.86 -3.0 473,239 + MPMX19_00474 0.86 -0.8 473,239 + MPMX19_00474 0.86 -0.1 473,239 + MPMX19_00474 0.86 -1.2 473,240 - MPMX19_00474 0.86 -2.2 473,240 - MPMX19_00474 0.86 +1.6 473,240 - MPMX19_00474 0.86 +0.2 473,240 - MPMX19_00474 0.86 -1.9 473,405 + -0.9 473,405 + -1.1 473,406 - -0.7 473,406 - -0.7 473,422 + -1.2 473,422 + -1.1 473,422 + -1.1 473,423 - -1.6 473,423 - -1.0 473,450 - +0.2 473,461 + +0.2 473,462 - +0.6 473,491 + +0.3 473,491 + +0.1 473,491 + -0.1 473,491 + -1.8 473,491 + +0.2 473,491 + +0.5 473,491 + -2.4 473,491 + -0.1 473,492 - -1.2 473,492 - -0.7 473,492 - -0.4 473,492 - -1.2 473,492 - -0.1 473,492 - -1.5 473,492 - -0.8 473,495 + +0.1 473,495 + -0.6 473,495 + -0.7 473,495 + +0.6 473,495 + -2.3 473,495 + -0.1 473,495 + +0.2 473,495 + -0.6 473,496 - +0.2 473,496 - -0.3 473,503 + +0.0 473,503 + -0.5 473,503 + +0.2 473,503 + -1.5 473,503 + +0.1 473,504 - -1.7 473,504 - -1.8 473,507 + +0.4 473,507 + +0.4 473,507 + -0.9 473,507 + -0.2 473,507 + -0.1 473,507 + +1.5 473,508 - -0.9 473,508 - -0.9 473,510 + -2.6 473,511 - -0.9 473,522 + -0.5 473,522 + -0.4 473,523 - -1.4 473,772 + MPMX19_00475 0.32 -0.5 473,772 + MPMX19_00475 0.32 -0.2 473,772 + MPMX19_00475 0.32 -0.4 473,773 - MPMX19_00475 0.32 -1.7 473,773 - MPMX19_00475 0.32 -1.9 473,773 - MPMX19_00475 0.32 +1.3 473,773 - MPMX19_00475 0.32 -1.2 473,817 + MPMX19_00475 0.38 +0.6 474,229 + +1.1 474,229 + +0.6 474,229 + +0.1 474,229 + +0.6 474,229 + -0.2 474,230 - -0.3 474,230 - -0.5 474,230 - -2.3 474,355 + MPMX19_00476 0.14 +0.8 474,355 + MPMX19_00476 0.14 -0.4 474,355 + MPMX19_00476 0.14 +0.1 474,356 - MPMX19_00476 0.14 -1.5 474,356 - MPMX19_00476 0.14 -0.9 474,356 - MPMX19_00476 0.14 +0.4 474,356 - MPMX19_00476 0.14 -0.2 474,356 - MPMX19_00476 0.14 -0.5 474,356 - MPMX19_00476 0.14 +0.2 474,356 - MPMX19_00476 0.14 -0.7
Or see this region's nucleotide sequence