Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00432

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00431 and MPMX19_00432 are separated by 313 nucleotidesMPMX19_00432 and MPMX19_00433 are separated by 214 nucleotides MPMX19_00431: MPMX19_00431 - hypothetical protein, at 431,622 to 432,335 _00431 MPMX19_00432: MPMX19_00432 - hypothetical protein, at 432,649 to 432,861 _00432 MPMX19_00433: MPMX19_00433 - Lysine/ornithine decarboxylase, at 433,076 to 434,212 _00433 Position (kb) 432 433Strain fitness (log2 ratio) -2 -1 0 1at 431.675 kb on - strandat 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.729 kb on + strand, within MPMX19_00431at 431.729 kb on + strand, within MPMX19_00431at 431.729 kb on + strand, within MPMX19_00431at 431.729 kb on + strand, within MPMX19_00431at 431.730 kb on - strand, within MPMX19_00431at 431.730 kb on - strand, within MPMX19_00431at 431.842 kb on + strand, within MPMX19_00431at 431.842 kb on + strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 432.136 kb on + strand, within MPMX19_00431at 432.136 kb on + strand, within MPMX19_00431at 432.136 kb on + strand, within MPMX19_00431at 432.137 kb on - strand, within MPMX19_00431at 432.137 kb on - strand, within MPMX19_00431at 432.137 kb on - strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.142 kb on + strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.143 kb on - strand, within MPMX19_00431at 432.380 kb on + strandat 432.381 kb on - strandat 432.381 kb on - strandat 432.459 kb on + strandat 432.459 kb on + strandat 432.570 kb on + strandat 432.570 kb on + strandat 432.570 kb on + strandat 432.571 kb on - strandat 432.571 kb on - strandat 432.571 kb on - strandat 432.571 kb on - strandat 432.571 kb on - strandat 432.571 kb on - strandat 432.571 kb on - strandat 432.574 kb on + strandat 432.574 kb on + strandat 432.574 kb on + strandat 432.574 kb on + strandat 432.574 kb on + strandat 432.574 kb on + strandat 432.575 kb on - strandat 432.575 kb on - strandat 432.575 kb on - strandat 432.575 kb on - strandat 432.575 kb on - strandat 432.575 kb on - strandat 432.575 kb on - strandat 432.575 kb on - strandat 432.575 kb on - strandat 432.577 kb on - strandat 432.577 kb on - strandat 432.776 kb on - strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.789 kb on + strand, within MPMX19_00432at 432.790 kb on - strand, within MPMX19_00432at 432.790 kb on - strand, within MPMX19_00432at 432.790 kb on - strand, within MPMX19_00432at 432.790 kb on - strand, within MPMX19_00432at 432.790 kb on - strand, within MPMX19_00432at 432.790 kb on - strand, within MPMX19_00432at 432.790 kb on - strand, within MPMX19_00432at 432.870 kb on - strandat 432.939 kb on + strandat 432.939 kb on + strandat 432.939 kb on + strandat 432.940 kb on - strandat 432.940 kb on - strandat 432.940 kb on - strandat 433.086 kb on + strandat 433.086 kb on + strandat 433.086 kb on + strandat 433.086 kb on + strandat 433.086 kb on + strandat 433.087 kb on - strandat 433.087 kb on - strandat 433.128 kb on + strandat 433.128 kb on + strandat 433.129 kb on - strandat 433.140 kb on + strandat 433.140 kb on + strandat 433.141 kb on - strandat 433.201 kb on - strand, within MPMX19_00433at 433.201 kb on - strand, within MPMX19_00433at 433.201 kb on - strand, within MPMX19_00433at 433.215 kb on + strand, within MPMX19_00433at 433.215 kb on + strand, within MPMX19_00433at 433.216 kb on - strand, within MPMX19_00433at 433.216 kb on - strand, within MPMX19_00433at 433.216 kb on - strand, within MPMX19_00433at 433.216 kb on - strand, within MPMX19_00433at 433.362 kb on + strand, within MPMX19_00433at 433.362 kb on + strand, within MPMX19_00433at 433.362 kb on + strand, within MPMX19_00433at 433.362 kb on + strand, within MPMX19_00433at 433.362 kb on + strand, within MPMX19_00433at 433.363 kb on - strand, within MPMX19_00433at 433.363 kb on - strand, within MPMX19_00433at 433.525 kb on - strand, within MPMX19_00433at 433.705 kb on - strand, within MPMX19_00433

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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431,675 - -0.5
431,722 + MPMX19_00431 0.14 -1.5
431,722 + MPMX19_00431 0.14 -2.5
431,722 + MPMX19_00431 0.14 -1.0
431,722 + MPMX19_00431 0.14 -0.9
431,722 + MPMX19_00431 0.14 -0.4
431,722 + MPMX19_00431 0.14 -1.1
431,722 + MPMX19_00431 0.14 -0.8
431,722 + MPMX19_00431 0.14 +0.9
431,722 + MPMX19_00431 0.14 -1.5
431,722 + MPMX19_00431 0.14 -0.9
431,723 - MPMX19_00431 0.14 -0.5
431,723 - MPMX19_00431 0.14 -1.3
431,723 - MPMX19_00431 0.14 +0.7
431,723 - MPMX19_00431 0.14 -0.0
431,723 - MPMX19_00431 0.14 -0.1
431,723 - MPMX19_00431 0.14 -1.5
431,723 - MPMX19_00431 0.14 -1.1
431,723 - MPMX19_00431 0.14 -2.5
431,729 + MPMX19_00431 0.15 -1.2
431,729 + MPMX19_00431 0.15 -0.9
431,729 + MPMX19_00431 0.15 -1.1
431,729 + MPMX19_00431 0.15 -0.9
431,730 - MPMX19_00431 0.15 +1.1
431,730 - MPMX19_00431 0.15 -0.9
431,842 + MPMX19_00431 0.31 -2.1
431,842 + MPMX19_00431 0.31 -0.3
431,843 - MPMX19_00431 0.31 -1.3
431,843 - MPMX19_00431 0.31 -0.4
431,843 - MPMX19_00431 0.31 +1.2
431,843 - MPMX19_00431 0.31 -1.7
431,843 - MPMX19_00431 0.31 -1.1
432,136 + MPMX19_00431 0.72 +0.9
432,136 + MPMX19_00431 0.72 -0.3
432,136 + MPMX19_00431 0.72 +0.1
432,137 - MPMX19_00431 0.72 -0.3
432,137 - MPMX19_00431 0.72 -2.0
432,137 - MPMX19_00431 0.72 -0.9
432,142 + MPMX19_00431 0.73 -0.9
432,142 + MPMX19_00431 0.73 +1.4
432,142 + MPMX19_00431 0.73 -0.6
432,142 + MPMX19_00431 0.73 +0.3
432,142 + MPMX19_00431 0.73 +0.7
432,142 + MPMX19_00431 0.73 +0.9
432,142 + MPMX19_00431 0.73 -1.5
432,142 + MPMX19_00431 0.73 +0.3
432,142 + MPMX19_00431 0.73 -0.5
432,142 + MPMX19_00431 0.73 -2.3
432,142 + MPMX19_00431 0.73 -0.1
432,142 + MPMX19_00431 0.73 +0.8
432,142 + MPMX19_00431 0.73 +0.1
432,142 + MPMX19_00431 0.73 +0.1
432,142 + MPMX19_00431 0.73 -1.4
432,142 + MPMX19_00431 0.73 -0.3
432,142 + MPMX19_00431 0.73 -0.8
432,142 + MPMX19_00431 0.73 -0.7
432,143 - MPMX19_00431 0.73 -0.8
432,143 - MPMX19_00431 0.73 -1.7
432,143 - MPMX19_00431 0.73 +0.3
432,143 - MPMX19_00431 0.73 -1.7
432,143 - MPMX19_00431 0.73 -0.1
432,143 - MPMX19_00431 0.73 +1.3
432,143 - MPMX19_00431 0.73 -0.9
432,143 - MPMX19_00431 0.73 +0.1
432,143 - MPMX19_00431 0.73 -0.1
432,143 - MPMX19_00431 0.73 -0.0
432,143 - MPMX19_00431 0.73 +0.7
432,143 - MPMX19_00431 0.73 +1.2
432,143 - MPMX19_00431 0.73 -0.7
432,380 + -1.1
432,381 - -0.6
432,381 - -0.4
432,459 + -0.5
432,459 + -0.5
432,570 + +1.5
432,570 + +0.1
432,570 + -1.6
432,571 - +1.5
432,571 - -0.7
432,571 - -1.1
432,571 - +0.1
432,571 - -1.0
432,571 - -2.0
432,571 - -1.0
432,574 + +0.1
432,574 + -1.2
432,574 + -0.1
432,574 + -0.5
432,574 + -2.3
432,574 + -0.5
432,575 - -0.9
432,575 - -1.7
432,575 - +0.4
432,575 - -1.9
432,575 - -0.9
432,575 - +0.3
432,575 - -1.3
432,575 - -0.9
432,575 - +1.0
432,577 - -0.5
432,577 - -0.7
432,776 - MPMX19_00432 0.60 -0.1
432,789 + MPMX19_00432 0.66 -1.1
432,789 + MPMX19_00432 0.66 -0.5
432,789 + MPMX19_00432 0.66 -1.7
432,789 + MPMX19_00432 0.66 -1.3
432,789 + MPMX19_00432 0.66 -2.1
432,789 + MPMX19_00432 0.66 -2.0
432,789 + MPMX19_00432 0.66 -1.7
432,789 + MPMX19_00432 0.66 +0.5
432,789 + MPMX19_00432 0.66 +0.1
432,789 + MPMX19_00432 0.66 +0.7
432,789 + MPMX19_00432 0.66 -0.3
432,790 - MPMX19_00432 0.66 -1.5
432,790 - MPMX19_00432 0.66 +0.9
432,790 - MPMX19_00432 0.66 +0.2
432,790 - MPMX19_00432 0.66 +0.1
432,790 - MPMX19_00432 0.66 -1.5
432,790 - MPMX19_00432 0.66 -1.8
432,790 - MPMX19_00432 0.66 -2.3
432,870 - +0.1
432,939 + -1.8
432,939 + -0.6
432,939 + -0.9
432,940 - -0.8
432,940 - -1.2
432,940 - +0.9
433,086 + +0.7
433,086 + +0.8
433,086 + -0.5
433,086 + -1.1
433,086 + +1.1
433,087 - +0.2
433,087 - -1.1
433,128 + +0.4
433,128 + +0.7
433,129 - -0.8
433,140 + -0.1
433,140 + +1.3
433,141 - +0.3
433,201 - MPMX19_00433 0.11 -0.5
433,201 - MPMX19_00433 0.11 -1.3
433,201 - MPMX19_00433 0.11 -0.5
433,215 + MPMX19_00433 0.12 -0.7
433,215 + MPMX19_00433 0.12 -1.1
433,216 - MPMX19_00433 0.12 -0.4
433,216 - MPMX19_00433 0.12 +0.3
433,216 - MPMX19_00433 0.12 -1.2
433,216 - MPMX19_00433 0.12 -0.3
433,362 + MPMX19_00433 0.25 +0.2
433,362 + MPMX19_00433 0.25 -0.5
433,362 + MPMX19_00433 0.25 -1.1
433,362 + MPMX19_00433 0.25 -0.5
433,362 + MPMX19_00433 0.25 -0.7
433,363 - MPMX19_00433 0.25 -0.8
433,363 - MPMX19_00433 0.25 +0.2
433,525 - MPMX19_00433 0.39 -2.3
433,705 - MPMX19_00433 0.55 -1.2

Or see this region's nucleotide sequence