Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00368 and MPMX19_00369 are separated by 104 nucleotides MPMX19_00369 and MPMX19_00370 are separated by 150 nucleotides MPMX19_00370 and MPMX19_00371 are separated by 19 nucleotides
MPMX19_00368: MPMX19_00368 - hypothetical protein, at 377,099 to 377,683
_00368
MPMX19_00369: MPMX19_00369 - hypothetical protein, at 377,788 to 378,048
_00369
MPMX19_00370: MPMX19_00370 - hypothetical protein, at 378,199 to 378,546
_00370
MPMX19_00371: MPMX19_00371 - hypothetical protein, at 378,566 to 379,702
_00371
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 376.809 kb on + strand at 376.810 kb on - strand at 376.845 kb on - strand at 376.845 kb on - strand at 376.864 kb on + strand at 376.876 kb on + strand at 376.877 kb on - strand at 376.877 kb on - strand at 376.877 kb on - strand at 376.877 kb on - strand at 376.877 kb on - strand at 376.893 kb on + strand at 376.893 kb on + strand at 376.893 kb on + strand at 376.894 kb on - strand at 376.894 kb on - strand at 376.954 kb on + strand at 376.954 kb on + strand at 376.954 kb on + strand at 376.954 kb on + strand at 376.954 kb on + strand at 376.955 kb on - strand at 376.955 kb on - strand at 376.955 kb on - strand at 376.955 kb on - strand at 376.955 kb on - strand at 376.955 kb on - strand at 377.094 kb on + strand at 377.095 kb on - strand at 377.095 kb on - strand at 377.095 kb on - strand at 377.095 kb on - strand at 377.231 kb on + strand, within MPMX19_00368 at 377.231 kb on + strand, within MPMX19_00368 at 377.231 kb on + strand, within MPMX19_00368 at 377.231 kb on + strand, within MPMX19_00368 at 377.231 kb on + strand, within MPMX19_00368 at 377.232 kb on - strand, within MPMX19_00368 at 377.232 kb on - strand, within MPMX19_00368 at 377.232 kb on - strand, within MPMX19_00368 at 377.232 kb on - strand, within MPMX19_00368 at 377.411 kb on + strand, within MPMX19_00368 at 377.411 kb on + strand, within MPMX19_00368 at 377.411 kb on + strand, within MPMX19_00368 at 377.412 kb on - strand, within MPMX19_00368 at 377.412 kb on - strand, within MPMX19_00368 at 377.412 kb on - strand, within MPMX19_00368 at 377.412 kb on - strand, within MPMX19_00368 at 377.412 kb on - strand, within MPMX19_00368 at 377.495 kb on + strand, within MPMX19_00368 at 377.495 kb on + strand, within MPMX19_00368 at 377.495 kb on + strand, within MPMX19_00368 at 377.495 kb on + strand, within MPMX19_00368 at 377.496 kb on - strand, within MPMX19_00368 at 377.496 kb on - strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.501 kb on + strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.502 kb on - strand, within MPMX19_00368 at 377.549 kb on + strand, within MPMX19_00368 at 377.549 kb on + strand, within MPMX19_00368 at 377.549 kb on + strand, within MPMX19_00368 at 377.549 kb on + strand, within MPMX19_00368 at 377.550 kb on - strand, within MPMX19_00368 at 377.550 kb on - strand, within MPMX19_00368 at 377.550 kb on - strand, within MPMX19_00368 at 377.550 kb on - strand, within MPMX19_00368 at 377.550 kb on - strand, within MPMX19_00368 at 377.550 kb on - strand, within MPMX19_00368 at 377.555 kb on + strand, within MPMX19_00368 at 377.555 kb on + strand, within MPMX19_00368 at 377.555 kb on + strand, within MPMX19_00368 at 377.556 kb on - strand, within MPMX19_00368 at 377.556 kb on - strand, within MPMX19_00368 at 377.556 kb on - strand, within MPMX19_00368 at 377.675 kb on + strand at 377.675 kb on + strand at 377.675 kb on + strand at 377.675 kb on + strand at 377.675 kb on + strand at 377.675 kb on + strand at 377.675 kb on + strand at 377.675 kb on + strand at 377.675 kb on + strand at 377.675 kb on + strand at 377.676 kb on - strand at 377.676 kb on - strand at 377.676 kb on - strand at 377.676 kb on - strand at 377.676 kb on - strand at 377.676 kb on - strand at 377.676 kb on - strand at 377.676 kb on - strand at 377.676 kb on - strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.681 kb on + strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 377.682 kb on - strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.136 kb on + strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.137 kb on - strand at 378.142 kb on + strand at 378.143 kb on - strand at 378.143 kb on - strand at 378.143 kb on - strand at 378.148 kb on - strand at 378.159 kb on + strand at 378.159 kb on + strand at 378.159 kb on + strand at 378.159 kb on + strand at 378.159 kb on + strand at 378.159 kb on + strand at 378.159 kb on + strand at 378.159 kb on + strand at 378.160 kb on - strand at 378.160 kb on - strand at 378.160 kb on - strand at 378.160 kb on - strand at 378.160 kb on - strand at 378.160 kb on - strand at 378.160 kb on - strand at 378.310 kb on + strand, within MPMX19_00370 at 378.310 kb on + strand, within MPMX19_00370 at 378.311 kb on - strand, within MPMX19_00370 at 378.311 kb on - strand, within MPMX19_00370 at 378.311 kb on - strand, within MPMX19_00370 at 378.311 kb on - strand, within MPMX19_00370 at 378.311 kb on - strand, within MPMX19_00370 at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.558 kb on - strand at 378.612 kb on + strand at 378.612 kb on + strand at 378.612 kb on + strand at 378.612 kb on + strand at 378.612 kb on + strand at 378.613 kb on - strand at 378.613 kb on - strand at 378.711 kb on + strand, within MPMX19_00371 at 378.711 kb on + strand, within MPMX19_00371 at 378.711 kb on + strand, within MPMX19_00371 at 378.711 kb on + strand, within MPMX19_00371 at 378.711 kb on + strand, within MPMX19_00371 at 378.712 kb on - strand, within MPMX19_00371 at 378.712 kb on - strand, within MPMX19_00371 at 378.712 kb on - strand, within MPMX19_00371 at 378.712 kb on - strand, within MPMX19_00371 at 378.712 kb on - strand, within MPMX19_00371 at 378.712 kb on - strand, within MPMX19_00371 at 378.855 kb on + strand, within MPMX19_00371 at 378.855 kb on + strand, within MPMX19_00371 at 378.876 kb on + strand, within MPMX19_00371 at 378.876 kb on + strand, within MPMX19_00371 at 378.876 kb on + strand, within MPMX19_00371 at 378.877 kb on - strand, within MPMX19_00371 at 378.877 kb on - strand, within MPMX19_00371 at 378.877 kb on - strand, within MPMX19_00371
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 376,809 + -0.8 376,810 - -0.1 376,845 - +0.7 376,845 - +0.3 376,864 + +1.2 376,876 + +0.3 376,877 - +0.7 376,877 - -0.5 376,877 - -0.4 376,877 - -2.5 376,877 - +0.7 376,893 + -2.1 376,893 + +0.3 376,893 + -2.1 376,894 - -0.7 376,894 - -0.3 376,954 + -0.5 376,954 + -1.1 376,954 + -0.1 376,954 + +0.2 376,954 + -0.0 376,955 - +0.7 376,955 - -1.8 376,955 - -2.0 376,955 - -1.0 376,955 - +0.0 376,955 - -0.3 377,094 + -1.1 377,095 - -1.7 377,095 - +0.2 377,095 - +0.4 377,095 - -0.0 377,231 + MPMX19_00368 0.23 -0.6 377,231 + MPMX19_00368 0.23 -0.6 377,231 + MPMX19_00368 0.23 -1.7 377,231 + MPMX19_00368 0.23 -0.1 377,231 + MPMX19_00368 0.23 +0.5 377,232 - MPMX19_00368 0.23 -0.3 377,232 - MPMX19_00368 0.23 -0.1 377,232 - MPMX19_00368 0.23 +0.2 377,232 - MPMX19_00368 0.23 -0.9 377,411 + MPMX19_00368 0.53 +0.1 377,411 + MPMX19_00368 0.53 +0.2 377,411 + MPMX19_00368 0.53 +0.7 377,412 - MPMX19_00368 0.54 -3.3 377,412 - MPMX19_00368 0.54 +0.9 377,412 - MPMX19_00368 0.54 -1.3 377,412 - MPMX19_00368 0.54 +0.4 377,412 - MPMX19_00368 0.54 -1.9 377,495 + MPMX19_00368 0.68 -1.7 377,495 + MPMX19_00368 0.68 -0.8 377,495 + MPMX19_00368 0.68 +0.0 377,495 + MPMX19_00368 0.68 +0.3 377,496 - MPMX19_00368 0.68 +0.9 377,496 - MPMX19_00368 0.68 -1.1 377,501 + MPMX19_00368 0.69 +0.7 377,501 + MPMX19_00368 0.69 -0.7 377,501 + MPMX19_00368 0.69 -0.5 377,501 + MPMX19_00368 0.69 +0.1 377,501 + MPMX19_00368 0.69 -1.9 377,501 + MPMX19_00368 0.69 +0.9 377,501 + MPMX19_00368 0.69 -0.8 377,501 + MPMX19_00368 0.69 +1.4 377,501 + MPMX19_00368 0.69 -0.1 377,501 + MPMX19_00368 0.69 +0.9 377,501 + MPMX19_00368 0.69 -0.9 377,501 + MPMX19_00368 0.69 -1.9 377,501 + MPMX19_00368 0.69 -0.3 377,501 + MPMX19_00368 0.69 -0.8 377,501 + MPMX19_00368 0.69 -0.0 377,502 - MPMX19_00368 0.69 -2.3 377,502 - MPMX19_00368 0.69 -0.8 377,502 - MPMX19_00368 0.69 +0.8 377,502 - MPMX19_00368 0.69 -0.3 377,502 - MPMX19_00368 0.69 -0.3 377,502 - MPMX19_00368 0.69 -0.3 377,502 - MPMX19_00368 0.69 -0.8 377,502 - MPMX19_00368 0.69 +0.3 377,502 - MPMX19_00368 0.69 -0.3 377,502 - MPMX19_00368 0.69 -0.5 377,502 - MPMX19_00368 0.69 -0.5 377,502 - MPMX19_00368 0.69 -0.8 377,502 - MPMX19_00368 0.69 -0.9 377,502 - MPMX19_00368 0.69 +1.1 377,502 - MPMX19_00368 0.69 +0.4 377,502 - MPMX19_00368 0.69 +0.2 377,502 - MPMX19_00368 0.69 -1.7 377,502 - MPMX19_00368 0.69 -0.4 377,502 - MPMX19_00368 0.69 +0.3 377,502 - MPMX19_00368 0.69 -1.8 377,502 - MPMX19_00368 0.69 +0.7 377,502 - MPMX19_00368 0.69 -0.8 377,502 - MPMX19_00368 0.69 +0.5 377,502 - MPMX19_00368 0.69 -0.3 377,502 - MPMX19_00368 0.69 +0.1 377,502 - MPMX19_00368 0.69 -0.3 377,502 - MPMX19_00368 0.69 -1.5 377,502 - MPMX19_00368 0.69 -0.7 377,502 - MPMX19_00368 0.69 +0.8 377,502 - MPMX19_00368 0.69 -0.2 377,549 + MPMX19_00368 0.77 -1.0 377,549 + MPMX19_00368 0.77 -1.1 377,549 + MPMX19_00368 0.77 -1.8 377,549 + MPMX19_00368 0.77 -2.2 377,550 - MPMX19_00368 0.77 -0.9 377,550 - MPMX19_00368 0.77 +0.7 377,550 - MPMX19_00368 0.77 -0.5 377,550 - MPMX19_00368 0.77 -0.1 377,550 - MPMX19_00368 0.77 +0.7 377,550 - MPMX19_00368 0.77 -0.3 377,555 + MPMX19_00368 0.78 -0.2 377,555 + MPMX19_00368 0.78 -1.5 377,555 + MPMX19_00368 0.78 -0.3 377,556 - MPMX19_00368 0.78 +0.8 377,556 - MPMX19_00368 0.78 -0.7 377,556 - MPMX19_00368 0.78 -0.8 377,675 + -0.5 377,675 + -0.3 377,675 + -1.8 377,675 + -1.7 377,675 + -0.4 377,675 + +0.1 377,675 + -2.5 377,675 + -1.0 377,675 + -0.1 377,675 + -1.0 377,676 - -1.8 377,676 - -1.7 377,676 - +0.2 377,676 - -0.3 377,676 - +0.1 377,676 - -2.3 377,676 - -0.1 377,676 - -0.4 377,676 - -0.7 377,681 + -0.5 377,681 + -0.5 377,681 + -0.3 377,681 + -0.8 377,681 + -0.2 377,681 + -1.0 377,681 + -0.3 377,681 + -1.0 377,681 + +0.5 377,681 + -2.0 377,681 + -0.2 377,681 + -0.4 377,681 + -0.8 377,681 + -0.6 377,681 + +0.3 377,681 + -0.7 377,681 + +0.4 377,681 + -1.2 377,681 + -1.0 377,681 + +0.9 377,682 - -0.1 377,682 - +0.3 377,682 - -1.1 377,682 - +1.2 377,682 - +0.9 377,682 - -0.4 377,682 - -0.3 377,682 - -0.7 377,682 - +0.3 377,682 - -0.4 377,682 - +1.2 377,682 - -0.3 377,682 - +0.2 377,682 - +0.4 377,682 - +0.7 377,682 - -1.3 377,682 - +0.7 377,682 - +0.9 377,682 - +1.5 377,682 - -1.9 377,682 - +0.1 377,682 - +0.3 377,682 - -1.5 377,682 - -0.5 377,682 - +0.4 377,682 - +0.1 377,682 - -0.1 378,136 + -0.5 378,136 + -2.2 378,136 + +0.1 378,136 + -0.6 378,136 + +0.3 378,136 + -1.2 378,136 + -0.5 378,136 + -2.4 378,136 + -2.0 378,136 + +0.9 378,136 + +1.3 378,136 + +0.2 378,136 + -0.4 378,136 + +0.4 378,136 + +0.5 378,136 + -0.1 378,136 + +0.2 378,136 + -1.9 378,137 - -1.0 378,137 - -1.0 378,137 - -1.6 378,137 - -0.4 378,137 - +0.4 378,137 - -0.7 378,137 - +0.9 378,137 - -0.9 378,137 - +0.7 378,137 - -0.5 378,137 - -1.3 378,137 - +0.7 378,137 - +0.4 378,137 - -2.0 378,142 + +0.1 378,143 - +1.3 378,143 - -0.7 378,143 - -0.2 378,148 - +0.1 378,159 + -0.8 378,159 + -1.3 378,159 + -0.1 378,159 + -1.6 378,159 + -0.1 378,159 + +0.1 378,159 + -0.7 378,159 + -0.2 378,160 - -0.7 378,160 - -1.2 378,160 - -0.8 378,160 - -0.5 378,160 - -1.9 378,160 - +1.3 378,160 - -1.3 378,310 + MPMX19_00370 0.32 -0.4 378,310 + MPMX19_00370 0.32 +0.4 378,311 - MPMX19_00370 0.32 +0.0 378,311 - MPMX19_00370 0.32 +0.2 378,311 - MPMX19_00370 0.32 +1.9 378,311 - MPMX19_00370 0.32 +0.1 378,311 - MPMX19_00370 0.32 -1.5 378,544 + -0.1 378,544 + -1.9 378,544 + -1.5 378,544 + -0.6 378,544 + +0.1 378,544 + +0.1 378,544 + -0.7 378,544 + +0.7 378,544 + +0.4 378,545 - -0.3 378,545 - -1.9 378,545 - -0.9 378,558 - -0.8 378,612 + -0.8 378,612 + -1.0 378,612 + +2.0 378,612 + +0.7 378,612 + +0.1 378,613 - -0.5 378,613 - +0.4 378,711 + MPMX19_00371 0.13 -0.7 378,711 + MPMX19_00371 0.13 -0.6 378,711 + MPMX19_00371 0.13 -1.7 378,711 + MPMX19_00371 0.13 -0.2 378,711 + MPMX19_00371 0.13 -1.0 378,712 - MPMX19_00371 0.13 -0.3 378,712 - MPMX19_00371 0.13 -0.7 378,712 - MPMX19_00371 0.13 -0.2 378,712 - MPMX19_00371 0.13 +0.1 378,712 - MPMX19_00371 0.13 -1.8 378,712 - MPMX19_00371 0.13 +0.1 378,855 + MPMX19_00371 0.25 +0.7 378,855 + MPMX19_00371 0.25 -0.4 378,876 + MPMX19_00371 0.27 -0.5 378,876 + MPMX19_00371 0.27 -1.2 378,876 + MPMX19_00371 0.27 -0.1 378,877 - MPMX19_00371 0.27 -0.9 378,877 - MPMX19_00371 0.27 -1.3 378,877 - MPMX19_00371 0.27 +1.6
Or see this region's nucleotide sequence