Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00342 and MPMX19_00343 are separated by 547 nucleotides MPMX19_00343 and MPMX19_00344 are separated by 141 nucleotides MPMX19_00344 and MPMX19_00345 are separated by 25 nucleotides MPMX19_00345 and MPMX19_00346 are separated by 99 nucleotides
MPMX19_00342: MPMX19_00342 - Peptidoglycan O-acetyltransferase, at 349,885 to 351,321
_00342
MPMX19_00343: MPMX19_00343 - Peptide chain release factor RF2, at 351,869 to 352,837
_00343
MPMX19_00344: MPMX19_00344 - hypothetical protein, at 352,979 to 353,305
_00344
MPMX19_00345: MPMX19_00345 - hypothetical protein, at 353,331 to 353,567
_00345
MPMX19_00346: MPMX19_00346 - Trehalose-phosphate phosphatase, at 353,667 to 354,467
_00346
Position (kb) 351
352
353 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 350.900 kb on + strand, within MPMX19_00342 at 350.900 kb on + strand, within MPMX19_00342 at 350.900 kb on + strand, within MPMX19_00342 at 350.900 kb on + strand, within MPMX19_00342 at 350.900 kb on + strand, within MPMX19_00342 at 350.900 kb on + strand, within MPMX19_00342 at 350.900 kb on + strand, within MPMX19_00342 at 350.900 kb on + strand, within MPMX19_00342 at 350.901 kb on - strand, within MPMX19_00342 at 350.901 kb on - strand, within MPMX19_00342 at 350.901 kb on - strand, within MPMX19_00342 at 350.901 kb on - strand, within MPMX19_00342 at 350.901 kb on - strand, within MPMX19_00342 at 350.901 kb on - strand, within MPMX19_00342 at 350.901 kb on - strand, within MPMX19_00342 at 350.901 kb on - strand, within MPMX19_00342 at 350.915 kb on + strand, within MPMX19_00342 at 350.916 kb on - strand, within MPMX19_00342 at 350.916 kb on - strand, within MPMX19_00342 at 350.916 kb on - strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.936 kb on + strand, within MPMX19_00342 at 350.937 kb on - strand, within MPMX19_00342 at 350.937 kb on - strand, within MPMX19_00342 at 350.937 kb on - strand, within MPMX19_00342 at 350.937 kb on - strand, within MPMX19_00342 at 350.937 kb on - strand, within MPMX19_00342 at 350.937 kb on - strand, within MPMX19_00342 at 350.937 kb on - strand, within MPMX19_00342 at 350.937 kb on - strand, within MPMX19_00342 at 351.039 kb on - strand, within MPMX19_00342 at 351.039 kb on - strand, within MPMX19_00342 at 351.039 kb on - strand, within MPMX19_00342 at 351.039 kb on - strand, within MPMX19_00342 at 351.039 kb on - strand, within MPMX19_00342 at 351.041 kb on + strand, within MPMX19_00342 at 351.041 kb on + strand, within MPMX19_00342 at 351.042 kb on - strand, within MPMX19_00342 at 351.092 kb on + strand, within MPMX19_00342 at 351.092 kb on + strand, within MPMX19_00342 at 351.092 kb on + strand, within MPMX19_00342 at 351.092 kb on + strand, within MPMX19_00342 at 351.092 kb on + strand, within MPMX19_00342 at 351.092 kb on + strand, within MPMX19_00342 at 351.093 kb on - strand, within MPMX19_00342 at 351.093 kb on - strand, within MPMX19_00342 at 351.093 kb on - strand, within MPMX19_00342 at 351.093 kb on - strand, within MPMX19_00342 at 351.093 kb on - strand, within MPMX19_00342 at 351.093 kb on - strand, within MPMX19_00342 at 351.093 kb on - strand, within MPMX19_00342 at 351.093 kb on - strand, within MPMX19_00342 at 351.143 kb on + strand, within MPMX19_00342 at 351.143 kb on + strand, within MPMX19_00342 at 351.143 kb on + strand, within MPMX19_00342 at 351.143 kb on + strand, within MPMX19_00342 at 351.143 kb on + strand, within MPMX19_00342 at 351.143 kb on + strand, within MPMX19_00342 at 351.144 kb on - strand, within MPMX19_00342 at 351.144 kb on - strand, within MPMX19_00342 at 351.144 kb on - strand, within MPMX19_00342 at 351.144 kb on - strand, within MPMX19_00342 at 351.144 kb on - strand, within MPMX19_00342 at 351.144 kb on - strand, within MPMX19_00342 at 351.144 kb on - strand, within MPMX19_00342 at 351.198 kb on - strand at 351.203 kb on + strand at 351.203 kb on + strand at 351.203 kb on + strand at 351.203 kb on + strand at 351.203 kb on + strand at 351.203 kb on + strand at 351.203 kb on + strand at 351.204 kb on - strand at 351.204 kb on - strand at 351.204 kb on - strand at 351.204 kb on - strand at 351.204 kb on - strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.210 kb on + strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.211 kb on - strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.212 kb on + strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.213 kb on - strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.441 kb on + strand at 351.442 kb on - strand at 351.442 kb on - strand at 351.442 kb on - strand at 351.442 kb on - strand at 351.442 kb on - strand at 351.442 kb on - strand at 351.442 kb on - strand at 351.476 kb on - strand at 351.502 kb on + strand at 351.502 kb on + strand at 351.502 kb on + strand at 351.502 kb on + strand at 351.502 kb on + strand at 351.502 kb on + strand at 351.502 kb on + strand at 351.503 kb on - strand at 351.503 kb on - strand at 351.503 kb on - strand at 351.503 kb on - strand at 351.539 kb on + strand at 351.539 kb on + strand at 351.540 kb on - strand at 351.540 kb on - strand at 351.540 kb on - strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.659 kb on + strand at 351.661 kb on + strand at 351.661 kb on + strand at 351.661 kb on + strand at 351.661 kb on + strand at 351.661 kb on + strand at 351.661 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 353.198 kb on + strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.616 kb on + strand at 353.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 350,900 + MPMX19_00342 0.71 -1.1 350,900 + MPMX19_00342 0.71 -0.5 350,900 + MPMX19_00342 0.71 -0.5 350,900 + MPMX19_00342 0.71 -2.1 350,900 + MPMX19_00342 0.71 +0.1 350,900 + MPMX19_00342 0.71 +0.1 350,900 + MPMX19_00342 0.71 -0.2 350,900 + MPMX19_00342 0.71 -0.0 350,901 - MPMX19_00342 0.71 +0.2 350,901 - MPMX19_00342 0.71 -0.2 350,901 - MPMX19_00342 0.71 -0.1 350,901 - MPMX19_00342 0.71 +0.9 350,901 - MPMX19_00342 0.71 -0.5 350,901 - MPMX19_00342 0.71 +0.8 350,901 - MPMX19_00342 0.71 +0.4 350,901 - MPMX19_00342 0.71 -0.6 350,915 + MPMX19_00342 0.72 -0.9 350,916 - MPMX19_00342 0.72 +0.7 350,916 - MPMX19_00342 0.72 +0.3 350,916 - MPMX19_00342 0.72 -0.2 350,936 + MPMX19_00342 0.73 -0.9 350,936 + MPMX19_00342 0.73 -0.7 350,936 + MPMX19_00342 0.73 +0.9 350,936 + MPMX19_00342 0.73 -1.2 350,936 + MPMX19_00342 0.73 -1.3 350,936 + MPMX19_00342 0.73 -1.1 350,936 + MPMX19_00342 0.73 -1.3 350,936 + MPMX19_00342 0.73 +0.6 350,936 + MPMX19_00342 0.73 +0.1 350,936 + MPMX19_00342 0.73 -0.6 350,936 + MPMX19_00342 0.73 -1.3 350,937 - MPMX19_00342 0.73 -0.6 350,937 - MPMX19_00342 0.73 +1.4 350,937 - MPMX19_00342 0.73 +0.1 350,937 - MPMX19_00342 0.73 +0.4 350,937 - MPMX19_00342 0.73 -0.6 350,937 - MPMX19_00342 0.73 +0.2 350,937 - MPMX19_00342 0.73 -0.9 350,937 - MPMX19_00342 0.73 +2.0 351,039 - MPMX19_00342 0.80 -0.5 351,039 - MPMX19_00342 0.80 -1.5 351,039 - MPMX19_00342 0.80 +1.7 351,039 - MPMX19_00342 0.80 -0.6 351,039 - MPMX19_00342 0.80 -3.0 351,041 + MPMX19_00342 0.80 -0.1 351,041 + MPMX19_00342 0.80 -1.5 351,042 - MPMX19_00342 0.81 +0.9 351,092 + MPMX19_00342 0.84 -0.3 351,092 + MPMX19_00342 0.84 -1.2 351,092 + MPMX19_00342 0.84 -1.8 351,092 + MPMX19_00342 0.84 -0.1 351,092 + MPMX19_00342 0.84 +0.4 351,092 + MPMX19_00342 0.84 -0.8 351,093 - MPMX19_00342 0.84 -3.3 351,093 - MPMX19_00342 0.84 -0.5 351,093 - MPMX19_00342 0.84 -0.3 351,093 - MPMX19_00342 0.84 -0.8 351,093 - MPMX19_00342 0.84 +0.7 351,093 - MPMX19_00342 0.84 -1.6 351,093 - MPMX19_00342 0.84 -2.0 351,093 - MPMX19_00342 0.84 -0.8 351,143 + MPMX19_00342 0.88 -0.4 351,143 + MPMX19_00342 0.88 -0.1 351,143 + MPMX19_00342 0.88 -2.3 351,143 + MPMX19_00342 0.88 -0.3 351,143 + MPMX19_00342 0.88 +0.1 351,143 + MPMX19_00342 0.88 -0.4 351,144 - MPMX19_00342 0.88 -0.2 351,144 - MPMX19_00342 0.88 +0.1 351,144 - MPMX19_00342 0.88 -1.0 351,144 - MPMX19_00342 0.88 +0.5 351,144 - MPMX19_00342 0.88 -0.3 351,144 - MPMX19_00342 0.88 +1.4 351,144 - MPMX19_00342 0.88 +0.4 351,198 - +0.1 351,203 + -0.2 351,203 + -0.9 351,203 + +0.3 351,203 + -1.0 351,203 + +0.4 351,203 + -0.4 351,203 + -1.6 351,204 - -0.9 351,204 - -1.2 351,204 - -0.2 351,204 - -0.3 351,204 - +0.5 351,210 + +0.4 351,210 + -0.4 351,210 + -1.3 351,210 + +0.0 351,210 + -0.4 351,210 + -1.8 351,210 + -0.7 351,210 + +0.2 351,210 + -1.4 351,210 + -0.6 351,210 + -0.6 351,210 + -0.5 351,210 + -0.8 351,210 + -1.6 351,211 - +0.1 351,211 - +1.4 351,211 - +0.5 351,211 - -0.6 351,211 - -0.6 351,211 - +0.1 351,211 - -2.2 351,211 - +0.9 351,211 - -0.5 351,211 - +0.5 351,211 - -0.9 351,211 - -0.6 351,211 - -1.3 351,211 - -0.5 351,211 - +0.4 351,211 - +0.2 351,211 - -0.7 351,211 - +0.5 351,211 - -0.8 351,211 - -0.2 351,211 - -0.8 351,211 - +0.5 351,212 + -1.3 351,212 + +0.2 351,212 + +1.0 351,212 + +0.1 351,212 + -0.1 351,212 + +0.3 351,212 + +0.2 351,212 + -0.3 351,212 + -0.6 351,212 + -0.1 351,212 + -1.1 351,212 + -0.8 351,212 + +1.4 351,212 + +0.0 351,212 + -0.5 351,212 + -0.3 351,212 + +0.7 351,212 + -0.6 351,212 + -0.9 351,212 + -1.1 351,212 + +1.4 351,213 - +1.7 351,213 - -1.2 351,213 - -0.4 351,213 - -0.2 351,213 - +0.4 351,213 - -1.0 351,213 - +0.4 351,213 - +0.1 351,213 - -0.7 351,213 - +0.8 351,213 - +0.6 351,213 - -0.8 351,213 - +0.2 351,213 - -1.1 351,213 - -0.9 351,213 - -2.3 351,213 - -0.9 351,213 - -0.9 351,213 - +0.3 351,213 - -1.4 351,213 - +0.1 351,213 - +0.7 351,441 + -0.3 351,441 + -1.3 351,441 + -0.4 351,441 + +0.8 351,441 + +0.9 351,441 + -0.9 351,441 + +0.1 351,441 + +0.8 351,441 + +1.0 351,441 + +0.5 351,442 - -0.6 351,442 - +0.2 351,442 - +0.5 351,442 - +1.0 351,442 - +0.9 351,442 - -0.2 351,442 - -1.4 351,476 - -1.0 351,502 + +0.1 351,502 + -1.0 351,502 + -1.9 351,502 + +0.1 351,502 + -1.0 351,502 + +0.2 351,502 + -1.3 351,503 - +0.5 351,503 - -0.2 351,503 - -0.3 351,503 - -0.7 351,539 + -0.3 351,539 + -1.8 351,540 - +0.1 351,540 - -0.1 351,540 - +0.5 351,655 + -0.6 351,655 + -0.3 351,655 + +0.1 351,655 + -1.6 351,655 + -1.6 351,655 + +0.1 351,659 + -0.7 351,659 + -0.8 351,659 + +0.1 351,659 + -1.9 351,659 + -0.3 351,659 + -0.1 351,659 + -1.8 351,659 + +0.2 351,659 + -0.6 351,659 + +0.4 351,659 + +0.2 351,659 + -0.7 351,659 + +0.8 351,659 + -0.1 351,659 + +0.5 351,659 + -0.4 351,659 + +0.0 351,659 + -0.7 351,659 + -2.1 351,659 + -0.3 351,659 + +0.7 351,659 + +0.5 351,659 + -0.5 351,659 + -0.1 351,659 + +0.7 351,659 + -0.6 351,659 + +0.4 351,659 + -1.3 351,659 + -0.5 351,659 + +0.4 351,659 + +0.1 351,659 + +0.5 351,659 + -2.2 351,659 + -1.4 351,659 + -0.5 351,659 + -0.3 351,659 + +0.6 351,659 + +0.5 351,659 + -1.9 351,659 + +0.7 351,659 + +0.1 351,659 + -0.9 351,659 + -1.3 351,659 + -0.8 351,659 + -0.5 351,659 + +0.0 351,659 + -0.5 351,661 + -0.5 351,661 + +0.8 351,661 + +0.2 351,661 + -1.0 351,661 + -0.4 351,661 + +0.2 352,951 + -1.3 352,951 + +0.0 352,951 + -0.3 352,951 + -1.6 352,951 + -0.8 352,951 + +0.4 352,952 - -0.1 352,952 - -0.4 352,952 - -1.0 352,952 - +0.5 352,952 - -1.4 352,952 - -0.2 352,952 - -0.5 352,952 - -1.5 352,952 - -0.6 353,198 + MPMX19_00344 0.67 -1.9 353,199 - MPMX19_00344 0.67 +1.3 353,199 - MPMX19_00344 0.67 -0.8 353,199 - MPMX19_00344 0.67 +0.2 353,199 - MPMX19_00344 0.67 -0.8 353,199 - MPMX19_00344 0.67 -0.6 353,282 + -0.5 353,282 + -1.0 353,282 + -1.0 353,282 + +0.2 353,282 + +0.5 353,282 + -1.5 353,282 + -1.9 353,283 - +0.2 353,283 - -0.2 353,283 - -0.9 353,283 - +0.4 353,283 - -0.9 353,600 + -0.6 353,600 + -0.1 353,600 + -1.8 353,600 + -1.1 353,601 - -0.9 353,601 - -0.4 353,601 - +0.0 353,601 - -1.1 353,601 - +0.7 353,601 - -0.2 353,601 - -0.8 353,601 - -0.1 353,601 - -0.8 353,601 - -1.1 353,616 + +0.2 353,616 + -1.0
Or see this region's nucleotide sequence