Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00318 and MPMX19_00319 are separated by 31 nucleotides MPMX19_00319 and MPMX19_00320 are separated by 146 nucleotides MPMX19_00320 and MPMX19_00321 are separated by 25 nucleotides
MPMX19_00318: MPMX19_00318 - hypothetical protein, at 322,552 to 323,880
_00318
MPMX19_00319: MPMX19_00319 - hypothetical protein, at 323,912 to 324,544
_00319
MPMX19_00320: MPMX19_00320 - hypothetical protein, at 324,691 to 325,335
_00320
MPMX19_00321: MPMX19_00321 - hypothetical protein, at 325,361 to 326,713
_00321
Position (kb) 324
325
326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.816 kb on - strand at 323.816 kb on - strand at 323.912 kb on - strand at 324.194 kb on + strand, within MPMX19_00319 at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.487 kb on + strand at 324.488 kb on - strand at 324.488 kb on - strand at 324.586 kb on + strand at 324.586 kb on + strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.652 kb on + strand at 324.653 kb on - strand at 324.653 kb on - strand at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.196 kb on - strand, within MPMX19_00320 at 325.196 kb on - strand, within MPMX19_00320 at 325.288 kb on + strand at 325.289 kb on - strand at 325.606 kb on + strand, within MPMX19_00321 at 325.607 kb on - strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 326.164 kb on + strand, within MPMX19_00321 at 326.165 kb on - strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.290 kb on - strand, within MPMX19_00321 at 326.290 kb on - strand, within MPMX19_00321 at 326.290 kb on - strand, within MPMX19_00321 at 326.290 kb on - strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 323,793 + -1.1 323,793 + -1.1 323,793 + -0.3 323,793 + -0.2 323,793 + -0.8 323,793 + +0.4 323,793 + -1.3 323,793 + -1.2 323,793 + -0.7 323,793 + +0.9 323,793 + -0.5 323,794 - -0.3 323,794 - -0.4 323,794 - -0.7 323,794 - +1.7 323,794 - -1.9 323,794 - +0.5 323,794 - -0.5 323,794 - +1.1 323,794 - -0.6 323,794 - -0.8 323,794 - -1.5 323,794 - +1.1 323,794 - +1.1 323,816 - -0.5 323,816 - -0.9 323,912 - +0.3 324,194 + MPMX19_00319 0.45 -0.5 324,485 + +0.3 324,485 + +0.5 324,485 + -0.2 324,485 + +0.1 324,485 + +0.3 324,485 + +1.1 324,485 + -0.3 324,485 + -0.0 324,485 + -1.0 324,485 + -1.2 324,485 + -0.5 324,485 + -0.3 324,486 - -0.5 324,486 - -1.2 324,486 - -0.2 324,486 - -0.6 324,486 - -1.6 324,486 - +0.0 324,486 - -0.1 324,486 - -0.8 324,486 - -1.5 324,486 - +0.5 324,486 - -0.1 324,486 - -0.7 324,486 - -0.2 324,487 + -1.3 324,488 - -0.4 324,488 - +0.1 324,586 + +0.1 324,586 + -1.3 324,587 - +0.8 324,587 - -0.5 324,587 - -0.6 324,600 + +0.7 324,600 + +0.4 324,600 + -0.4 324,600 + +0.6 324,600 + -0.6 324,600 + -1.3 324,601 - +0.1 324,601 - +0.5 324,601 - -1.4 324,601 - +0.5 324,601 - -1.7 324,601 - +0.1 324,601 - -0.2 324,601 - -0.5 324,601 - -0.7 324,601 - +0.1 324,652 + -0.2 324,653 - +0.1 324,653 - -0.8 325,195 + MPMX19_00320 0.78 -1.0 325,195 + MPMX19_00320 0.78 -1.1 325,195 + MPMX19_00320 0.78 +1.6 325,195 + MPMX19_00320 0.78 -0.2 325,196 - MPMX19_00320 0.78 -1.1 325,196 - MPMX19_00320 0.78 -0.5 325,288 + -1.2 325,289 - -1.8 325,606 + MPMX19_00321 0.18 +1.1 325,607 - MPMX19_00321 0.18 -0.3 325,814 + MPMX19_00321 0.33 +0.2 325,814 + MPMX19_00321 0.33 +0.2 325,814 + MPMX19_00321 0.33 -0.3 325,814 + MPMX19_00321 0.33 -0.9 325,814 + MPMX19_00321 0.33 -1.1 325,814 + MPMX19_00321 0.33 +0.3 325,814 + MPMX19_00321 0.33 -0.2 325,814 + MPMX19_00321 0.33 -0.4 325,814 + MPMX19_00321 0.33 -0.5 325,814 + MPMX19_00321 0.33 +0.7 325,814 + MPMX19_00321 0.33 -0.2 325,814 + MPMX19_00321 0.33 +1.1 325,815 - MPMX19_00321 0.34 +0.5 325,815 - MPMX19_00321 0.34 +0.3 325,815 - MPMX19_00321 0.34 -0.1 325,815 - MPMX19_00321 0.34 -0.8 325,815 - MPMX19_00321 0.34 -0.9 325,815 - MPMX19_00321 0.34 +0.1 325,815 - MPMX19_00321 0.34 -0.6 325,815 - MPMX19_00321 0.34 -0.6 325,815 - MPMX19_00321 0.34 -0.1 325,815 - MPMX19_00321 0.34 -0.0 325,815 - MPMX19_00321 0.34 +1.1 325,815 - MPMX19_00321 0.34 -0.5 326,164 + MPMX19_00321 0.59 -0.1 326,165 - MPMX19_00321 0.59 -0.1 326,289 + MPMX19_00321 0.69 -0.1 326,289 + MPMX19_00321 0.69 -0.5 326,289 + MPMX19_00321 0.69 -0.1 326,289 + MPMX19_00321 0.69 +0.5 326,289 + MPMX19_00321 0.69 -1.1 326,290 - MPMX19_00321 0.69 -1.9 326,290 - MPMX19_00321 0.69 +0.2 326,290 - MPMX19_00321 0.69 -0.1 326,290 - MPMX19_00321 0.69 -1.6 326,301 + MPMX19_00321 0.69 -1.3 326,301 + MPMX19_00321 0.69 -0.9 326,301 + MPMX19_00321 0.69 -0.0 326,301 + MPMX19_00321 0.69 -0.1 326,301 + MPMX19_00321 0.69 -0.8 326,301 + MPMX19_00321 0.69 -0.8 326,301 + MPMX19_00321 0.69 +0.4 326,301 + MPMX19_00321 0.69 +0.1 326,301 + MPMX19_00321 0.69 +0.7 326,301 + MPMX19_00321 0.69 +1.2 326,301 + MPMX19_00321 0.69 -0.1 326,301 + MPMX19_00321 0.69 -0.0 326,301 + MPMX19_00321 0.69 +0.1 326,301 + MPMX19_00321 0.69 +0.7 326,301 + MPMX19_00321 0.69 -0.6 326,301 + MPMX19_00321 0.69 -0.9 326,301 + MPMX19_00321 0.69 -2.0 326,301 + MPMX19_00321 0.69 -0.6 326,301 + MPMX19_00321 0.69 -0.1 326,301 + MPMX19_00321 0.69 -1.2 326,301 + MPMX19_00321 0.69 +2.2 326,302 - MPMX19_00321 0.70 -0.3 326,302 - MPMX19_00321 0.70 -0.5 326,302 - MPMX19_00321 0.70 +0.0 326,302 - MPMX19_00321 0.70 -0.2 326,302 - MPMX19_00321 0.70 +0.3 326,302 - MPMX19_00321 0.70 +0.9 326,302 - MPMX19_00321 0.70 +0.2 326,302 - MPMX19_00321 0.70 -1.5 326,302 - MPMX19_00321 0.70 -1.0 326,302 - MPMX19_00321 0.70 +0.0 326,302 - MPMX19_00321 0.70 -0.8 326,302 - MPMX19_00321 0.70 +0.6 326,302 - MPMX19_00321 0.70 +0.4 326,302 - MPMX19_00321 0.70 -1.3 326,302 - MPMX19_00321 0.70 -1.5 326,302 - MPMX19_00321 0.70 -0.6 326,302 - MPMX19_00321 0.70 -0.0 326,302 - MPMX19_00321 0.70 -1.8 326,302 - MPMX19_00321 0.70 -1.7 326,322 + MPMX19_00321 0.71 +1.4 326,322 + MPMX19_00321 0.71 +0.1 326,322 + MPMX19_00321 0.71 +0.1 326,322 + MPMX19_00321 0.71 -0.2 326,322 + MPMX19_00321 0.71 +1.4 326,322 + MPMX19_00321 0.71 -0.1 326,322 + MPMX19_00321 0.71 -0.4 326,322 + MPMX19_00321 0.71 +1.7 326,322 + MPMX19_00321 0.71 -0.9 326,322 + MPMX19_00321 0.71 +0.7 326,323 - MPMX19_00321 0.71 -0.4 326,323 - MPMX19_00321 0.71 -0.6 326,323 - MPMX19_00321 0.71 +0.1 326,323 - MPMX19_00321 0.71 -3.0 326,323 - MPMX19_00321 0.71 -0.1 326,323 - MPMX19_00321 0.71 -0.4
Or see this region's nucleotide sequence