Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00256 and MPMX19_00257 are separated by 118 nucleotides MPMX19_00257 and MPMX19_00258 are separated by 121 nucleotides MPMX19_00258 and MPMX19_00259 are separated by 20 nucleotides
MPMX19_00256: MPMX19_00256 - hypothetical protein, at 257,439 to 257,933
_00256
MPMX19_00257: MPMX19_00257 - hypothetical protein, at 258,052 to 258,627
_00257
MPMX19_00258: MPMX19_00258 - Protein ImuB, at 258,749 to 260,293
_00258
MPMX19_00259: MPMX19_00259 - hypothetical protein, at 260,314 to 262,377
_00259
Position (kb) 258
259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.973 kb on - strand at 258.017 kb on + strand at 258.017 kb on + strand at 258.018 kb on - strand at 258.018 kb on - strand at 258.018 kb on - strand at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.707 kb on - strand at 258.729 kb on - strand at 258.895 kb on - strand at 259.053 kb on - strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.189 kb on + strand at 260.189 kb on + strand at 260.189 kb on + strand at 260.189 kb on + strand at 260.190 kb on - strand at 260.190 kb on - strand at 260.190 kb on - strand at 260.190 kb on - strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.988 kb on - strand, within MPMX19_00259 at 260.988 kb on - strand, within MPMX19_00259 at 260.988 kb on - strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.267 kb on - strand, within MPMX19_00259 at 261.267 kb on - strand, within MPMX19_00259 at 261.267 kb on - strand, within MPMX19_00259
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 257,749 - MPMX19_00256 0.63 +0.4 257,749 - MPMX19_00256 0.63 -0.3 257,749 - MPMX19_00256 0.63 +0.1 257,749 - MPMX19_00256 0.63 +0.7 257,749 - MPMX19_00256 0.63 -0.2 257,749 - MPMX19_00256 0.63 -0.4 257,973 - -0.4 258,017 + -0.6 258,017 + -0.7 258,018 - -0.3 258,018 - +0.1 258,018 - -0.0 258,482 + MPMX19_00257 0.75 +0.9 258,482 + MPMX19_00257 0.75 +1.1 258,482 + MPMX19_00257 0.75 -0.3 258,482 + MPMX19_00257 0.75 -0.7 258,482 + MPMX19_00257 0.75 -0.8 258,482 + MPMX19_00257 0.75 +0.7 258,483 - MPMX19_00257 0.75 -0.9 258,483 - MPMX19_00257 0.75 -1.5 258,483 - MPMX19_00257 0.75 +0.4 258,483 - MPMX19_00257 0.75 -1.0 258,483 - MPMX19_00257 0.75 +1.5 258,483 - MPMX19_00257 0.75 -0.8 258,483 - MPMX19_00257 0.75 -0.9 258,483 - MPMX19_00257 0.75 +0.2 258,483 - MPMX19_00257 0.75 +0.4 258,483 - MPMX19_00257 0.75 -1.3 258,629 + -0.7 258,629 + -1.4 258,629 + -0.7 258,629 + +0.3 258,629 + -0.1 258,629 + -0.3 258,629 + +0.7 258,629 + +0.2 258,629 + -1.0 258,629 + -0.6 258,629 + -1.0 258,629 + +1.5 258,629 + -1.4 258,629 + -0.3 258,629 + +0.7 258,630 - -0.7 258,630 - -0.7 258,630 - +0.1 258,630 - -0.8 258,630 - -1.0 258,630 - +0.1 258,630 - -0.4 258,630 - -0.5 258,630 - -2.0 258,630 - +0.6 258,707 - -0.7 258,729 - -0.2 258,895 - -1.0 259,053 - MPMX19_00258 0.20 -0.4 259,415 + MPMX19_00258 0.43 -0.0 259,415 + MPMX19_00258 0.43 -1.0 259,415 + MPMX19_00258 0.43 -0.7 259,415 + MPMX19_00258 0.43 +2.0 259,416 - MPMX19_00258 0.43 +0.0 259,416 - MPMX19_00258 0.43 -0.7 259,416 - MPMX19_00258 0.43 +0.5 259,416 - MPMX19_00258 0.43 -0.0 259,416 - MPMX19_00258 0.43 +1.1 260,186 + -0.1 260,186 + +0.3 260,186 + +0.7 260,186 + -0.5 260,186 + +0.3 260,186 + +0.5 260,186 + -0.4 260,186 + +1.7 260,186 + -1.3 260,186 + -1.0 260,186 + -0.6 260,186 + +0.1 260,186 + -0.8 260,186 + -0.6 260,187 - -0.7 260,187 - -0.2 260,187 - -0.4 260,187 - -1.0 260,187 - +0.6 260,187 - -0.8 260,187 - +0.5 260,187 - -1.3 260,187 - -0.5 260,187 - +1.0 260,187 - -0.3 260,187 - -0.3 260,187 - -1.4 260,187 - +0.0 260,189 + +0.4 260,189 + -1.6 260,189 + -1.3 260,189 + +0.1 260,190 - +0.3 260,190 - -0.9 260,190 - -0.8 260,190 - +0.7 260,243 + -0.4 260,243 + -1.7 260,243 + +0.5 260,243 + -0.4 260,243 + -0.2 260,243 + +1.7 260,243 + -1.2 260,243 + -1.1 260,243 + -0.4 260,244 - -1.4 260,244 - +0.9 260,244 - +0.7 260,244 - -1.3 260,244 - +0.1 260,244 - +1.4 260,244 - -0.6 260,244 - +0.7 260,351 + -0.2 260,351 + -0.0 260,351 + +0.4 260,351 + +0.2 260,351 + -0.3 260,351 + -0.9 260,351 + +0.8 260,351 + -0.2 260,351 + -0.3 260,351 + -0.2 260,351 + -0.2 260,351 + -1.4 260,352 - -1.0 260,352 - -0.7 260,352 - +0.3 260,352 - +0.1 260,352 - +0.1 260,352 - -0.0 260,352 - -0.1 260,352 - +0.0 260,352 - +0.3 260,352 - -1.7 260,876 + MPMX19_00259 0.27 +0.9 260,876 + MPMX19_00259 0.27 -1.2 260,876 + MPMX19_00259 0.27 +0.3 260,876 + MPMX19_00259 0.27 -1.5 260,876 + MPMX19_00259 0.27 +0.0 260,876 + MPMX19_00259 0.27 +0.7 260,876 + MPMX19_00259 0.27 -0.4 260,876 + MPMX19_00259 0.27 -0.0 260,876 + MPMX19_00259 0.27 -1.3 260,876 + MPMX19_00259 0.27 +0.5 260,876 + MPMX19_00259 0.27 +0.5 260,876 + MPMX19_00259 0.27 -0.5 260,876 + MPMX19_00259 0.27 -1.5 260,877 - MPMX19_00259 0.27 -0.0 260,877 - MPMX19_00259 0.27 -0.2 260,877 - MPMX19_00259 0.27 +0.1 260,877 - MPMX19_00259 0.27 +0.3 260,877 - MPMX19_00259 0.27 +0.2 260,877 - MPMX19_00259 0.27 -1.6 260,877 - MPMX19_00259 0.27 -0.3 260,877 - MPMX19_00259 0.27 -0.8 260,877 - MPMX19_00259 0.27 +0.3 260,877 - MPMX19_00259 0.27 -0.9 260,877 - MPMX19_00259 0.27 +0.4 260,877 - MPMX19_00259 0.27 -0.6 260,877 - MPMX19_00259 0.27 -2.0 260,927 + MPMX19_00259 0.30 -0.2 260,927 + MPMX19_00259 0.30 -0.7 260,927 + MPMX19_00259 0.30 -1.9 260,927 + MPMX19_00259 0.30 +0.1 260,927 + MPMX19_00259 0.30 -0.9 260,927 + MPMX19_00259 0.30 -0.2 260,927 + MPMX19_00259 0.30 +0.0 260,927 + MPMX19_00259 0.30 +0.4 260,927 + MPMX19_00259 0.30 +0.4 260,927 + MPMX19_00259 0.30 -0.3 260,927 + MPMX19_00259 0.30 -2.5 260,927 + MPMX19_00259 0.30 -0.3 260,928 - MPMX19_00259 0.30 -2.0 260,928 - MPMX19_00259 0.30 +1.4 260,928 - MPMX19_00259 0.30 +0.3 260,928 - MPMX19_00259 0.30 -1.3 260,928 - MPMX19_00259 0.30 -0.2 260,928 - MPMX19_00259 0.30 +0.7 260,928 - MPMX19_00259 0.30 +1.7 260,928 - MPMX19_00259 0.30 +0.5 260,928 - MPMX19_00259 0.30 +0.1 260,928 - MPMX19_00259 0.30 +0.2 260,928 - MPMX19_00259 0.30 -1.6 260,928 - MPMX19_00259 0.30 -0.9 260,928 - MPMX19_00259 0.30 -0.3 260,928 - MPMX19_00259 0.30 +0.5 260,928 - MPMX19_00259 0.30 -0.3 260,928 - MPMX19_00259 0.30 -1.9 260,928 - MPMX19_00259 0.30 -0.3 260,928 - MPMX19_00259 0.30 -1.4 260,987 + MPMX19_00259 0.33 -1.1 260,987 + MPMX19_00259 0.33 +0.3 260,987 + MPMX19_00259 0.33 -0.2 260,987 + MPMX19_00259 0.33 +0.1 260,987 + MPMX19_00259 0.33 +0.3 260,987 + MPMX19_00259 0.33 -0.9 260,987 + MPMX19_00259 0.33 -0.6 260,988 - MPMX19_00259 0.33 -0.7 260,988 - MPMX19_00259 0.33 +1.7 260,988 - MPMX19_00259 0.33 -0.3 261,005 + MPMX19_00259 0.33 +0.4 261,005 + MPMX19_00259 0.33 -0.6 261,005 + MPMX19_00259 0.33 +0.2 261,005 + MPMX19_00259 0.33 +0.3 261,005 + MPMX19_00259 0.33 -0.7 261,005 + MPMX19_00259 0.33 +0.1 261,005 + MPMX19_00259 0.33 +1.7 261,005 + MPMX19_00259 0.33 -1.4 261,005 + MPMX19_00259 0.33 +0.1 261,005 + MPMX19_00259 0.33 -0.0 261,006 - MPMX19_00259 0.34 -0.6 261,006 - MPMX19_00259 0.34 -0.4 261,006 - MPMX19_00259 0.34 +1.1 261,006 - MPMX19_00259 0.34 +0.3 261,006 - MPMX19_00259 0.34 +0.0 261,006 - MPMX19_00259 0.34 +0.4 261,006 - MPMX19_00259 0.34 +0.5 261,006 - MPMX19_00259 0.34 -0.1 261,006 - MPMX19_00259 0.34 +0.3 261,006 - MPMX19_00259 0.34 -0.2 261,006 - MPMX19_00259 0.34 -0.5 261,006 - MPMX19_00259 0.34 -0.2 261,023 + MPMX19_00259 0.34 +0.2 261,023 + MPMX19_00259 0.34 -0.5 261,023 + MPMX19_00259 0.34 +0.7 261,023 + MPMX19_00259 0.34 -1.0 261,023 + MPMX19_00259 0.34 -0.3 261,023 + MPMX19_00259 0.34 +0.7 261,023 + MPMX19_00259 0.34 +1.2 261,023 + MPMX19_00259 0.34 +0.3 261,023 + MPMX19_00259 0.34 +0.3 261,023 + MPMX19_00259 0.34 -0.6 261,023 + MPMX19_00259 0.34 -0.3 261,023 + MPMX19_00259 0.34 -0.0 261,023 + MPMX19_00259 0.34 -2.2 261,023 + MPMX19_00259 0.34 +0.1 261,023 + MPMX19_00259 0.34 -2.4 261,023 + MPMX19_00259 0.34 +1.5 261,023 + MPMX19_00259 0.34 -1.1 261,024 - MPMX19_00259 0.34 +0.9 261,024 - MPMX19_00259 0.34 -1.4 261,024 - MPMX19_00259 0.34 -0.5 261,024 - MPMX19_00259 0.34 +1.7 261,024 - MPMX19_00259 0.34 +1.0 261,024 - MPMX19_00259 0.34 -1.8 261,024 - MPMX19_00259 0.34 -1.2 261,266 + MPMX19_00259 0.46 +0.1 261,266 + MPMX19_00259 0.46 -1.5 261,266 + MPMX19_00259 0.46 -0.7 261,266 + MPMX19_00259 0.46 -1.5 261,266 + MPMX19_00259 0.46 -1.7 261,266 + MPMX19_00259 0.46 -1.3 261,266 + MPMX19_00259 0.46 -0.2 261,266 + MPMX19_00259 0.46 +0.5 261,266 + MPMX19_00259 0.46 +0.1 261,266 + MPMX19_00259 0.46 -1.5 261,267 - MPMX19_00259 0.46 -2.6 261,267 - MPMX19_00259 0.46 -0.4 261,267 - MPMX19_00259 0.46 +0.6
Or see this region's nucleotide sequence