Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00235 and MPMX19_00236 are separated by 200 nucleotides MPMX19_00236 and MPMX19_00237 are separated by 109 nucleotides MPMX19_00237 and MPMX19_00238 are separated by 167 nucleotides
MPMX19_00235: MPMX19_00235 - hypothetical protein, at 239,283 to 239,576
_00235
MPMX19_00236: MPMX19_00236 - HTH-type transcriptional regulator IscR, at 239,777 to 240,232
_00236
MPMX19_00237: MPMX19_00237 - Cysteine synthase, at 240,342 to 241,301
_00237
MPMX19_00238: MPMX19_00238 - hypothetical protein, at 241,469 to 242,260
_00238
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 239.696 kb on + strand at 239.759 kb on + strand at 239.760 kb on - strand at 239.760 kb on - strand at 239.834 kb on + strand, within MPMX19_00236 at 239.834 kb on + strand, within MPMX19_00236 at 239.834 kb on + strand, within MPMX19_00236 at 239.834 kb on + strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.900 kb on + strand, within MPMX19_00236 at 239.900 kb on + strand, within MPMX19_00236 at 239.901 kb on - strand, within MPMX19_00236 at 239.901 kb on - strand, within MPMX19_00236 at 239.901 kb on - strand, within MPMX19_00236 at 239.901 kb on - strand, within MPMX19_00236 at 240.230 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.373 kb on - strand at 240.373 kb on - strand at 240.633 kb on + strand, within MPMX19_00237 at 240.633 kb on + strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 241.266 kb on + strand at 241.266 kb on + strand at 241.266 kb on + strand at 241.267 kb on - strand at 241.267 kb on - strand at 241.267 kb on - strand at 241.267 kb on - strand at 241.299 kb on + strand at 241.299 kb on + strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.478 kb on - strand at 241.478 kb on - strand at 241.478 kb on - strand at 241.478 kb on - strand at 241.478 kb on - strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.610 kb on + strand, within MPMX19_00238 at 241.610 kb on + strand, within MPMX19_00238 at 241.610 kb on + strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.785 kb on - strand, within MPMX19_00238 at 241.785 kb on - strand, within MPMX19_00238 at 241.785 kb on - strand, within MPMX19_00238 at 241.785 kb on - strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 239,696 + -0.0 239,759 + +0.5 239,760 - -1.6 239,760 - -0.3 239,834 + MPMX19_00236 0.12 +0.4 239,834 + MPMX19_00236 0.12 -2.0 239,834 + MPMX19_00236 0.12 -1.3 239,834 + MPMX19_00236 0.12 -1.1 239,835 - MPMX19_00236 0.13 -1.7 239,835 - MPMX19_00236 0.13 +0.5 239,835 - MPMX19_00236 0.13 -0.5 239,835 - MPMX19_00236 0.13 -0.6 239,835 - MPMX19_00236 0.13 +0.4 239,900 + MPMX19_00236 0.27 +0.1 239,900 + MPMX19_00236 0.27 -2.3 239,901 - MPMX19_00236 0.27 -0.1 239,901 - MPMX19_00236 0.27 -0.3 239,901 - MPMX19_00236 0.27 -0.3 239,901 - MPMX19_00236 0.27 -1.5 240,230 + +0.5 240,235 + -1.3 240,235 + +1.1 240,235 + -0.2 240,235 + -0.3 240,235 + -0.3 240,235 + +2.3 240,235 + -1.4 240,235 + -1.7 240,235 + -0.9 240,235 + -0.9 240,236 - +0.4 240,236 - -1.1 240,236 - -0.2 240,236 - +0.5 240,236 - +0.5 240,236 - -1.4 240,373 - -0.9 240,373 - -0.3 240,633 + MPMX19_00237 0.30 -0.2 240,633 + MPMX19_00237 0.30 -1.9 240,634 - MPMX19_00237 0.30 -0.6 240,634 - MPMX19_00237 0.30 -1.3 240,634 - MPMX19_00237 0.30 -0.3 240,634 - MPMX19_00237 0.30 +0.0 240,634 - MPMX19_00237 0.30 +1.0 240,634 - MPMX19_00237 0.30 -1.1 240,634 - MPMX19_00237 0.30 -1.6 240,789 + MPMX19_00237 0.47 -1.2 240,789 + MPMX19_00237 0.47 +0.7 240,789 + MPMX19_00237 0.47 +0.7 240,789 + MPMX19_00237 0.47 -0.4 240,789 + MPMX19_00237 0.47 -1.5 240,789 + MPMX19_00237 0.47 +1.1 240,789 + MPMX19_00237 0.47 +0.9 240,790 - MPMX19_00237 0.47 +0.1 240,790 - MPMX19_00237 0.47 -2.3 240,790 - MPMX19_00237 0.47 +0.7 240,790 - MPMX19_00237 0.47 -0.4 240,790 - MPMX19_00237 0.47 +0.4 240,790 - MPMX19_00237 0.47 -0.9 241,266 + -0.0 241,266 + -1.3 241,266 + -0.8 241,267 - +3.3 241,267 - +0.8 241,267 - -0.6 241,267 - -1.3 241,299 + +0.3 241,299 + -0.8 241,300 - +0.1 241,300 - -1.2 241,300 - -1.5 241,300 - -1.0 241,300 - -0.5 241,300 - -0.7 241,300 - -1.2 241,300 - +0.3 241,477 + +0.3 241,477 + -0.1 241,477 + -0.0 241,477 + +0.5 241,477 + -0.1 241,477 + +0.3 241,478 - +0.6 241,478 - +0.0 241,478 - -0.8 241,478 - -0.5 241,478 - -0.8 241,493 + +0.3 241,493 + +1.0 241,493 + -0.7 241,493 + +0.3 241,493 + +0.1 241,493 + -1.1 241,493 + +0.5 241,493 + +0.5 241,493 + +0.4 241,493 + -1.7 241,493 + -0.9 241,493 + -1.3 241,493 + -1.1 241,493 + -0.1 241,493 + +1.1 241,493 + -0.5 241,493 + +0.7 241,493 + -0.5 241,493 + +0.1 241,493 + -1.5 241,494 - +0.4 241,494 - +0.2 241,494 - -0.4 241,494 - -0.6 241,494 - +1.0 241,494 - -0.0 241,494 - -1.8 241,494 - -0.2 241,494 - -1.2 241,494 - +0.0 241,494 - -0.4 241,494 - +1.1 241,494 - +0.1 241,494 - -1.7 241,494 - +0.3 241,494 - -1.6 241,494 - +0.9 241,494 - -0.8 241,494 - -0.2 241,494 - -0.9 241,494 - -0.2 241,494 - -1.5 241,494 - -0.9 241,494 - -2.8 241,494 - -0.1 241,494 - -2.2 241,610 + MPMX19_00238 0.18 -1.6 241,610 + MPMX19_00238 0.18 -0.5 241,610 + MPMX19_00238 0.18 -0.2 241,611 - MPMX19_00238 0.18 -1.9 241,611 - MPMX19_00238 0.18 +0.5 241,611 - MPMX19_00238 0.18 +0.1 241,611 - MPMX19_00238 0.18 +0.6 241,611 - MPMX19_00238 0.18 -2.2 241,611 - MPMX19_00238 0.18 -1.1 241,736 + MPMX19_00238 0.34 +0.9 241,736 + MPMX19_00238 0.34 -1.2 241,736 + MPMX19_00238 0.34 -0.3 241,736 + MPMX19_00238 0.34 +1.0 241,736 + MPMX19_00238 0.34 -1.5 241,736 + MPMX19_00238 0.34 +0.0 241,736 + MPMX19_00238 0.34 -1.5 241,736 + MPMX19_00238 0.34 +0.4 241,736 + MPMX19_00238 0.34 -0.8 241,736 + MPMX19_00238 0.34 +0.6 241,736 + MPMX19_00238 0.34 -0.5 241,736 + MPMX19_00238 0.34 -1.4 241,736 + MPMX19_00238 0.34 -0.9 241,736 + MPMX19_00238 0.34 -2.2 241,737 - MPMX19_00238 0.34 +0.9 241,737 - MPMX19_00238 0.34 -0.4 241,737 - MPMX19_00238 0.34 +0.7 241,737 - MPMX19_00238 0.34 -0.9 241,737 - MPMX19_00238 0.34 +0.2 241,737 - MPMX19_00238 0.34 -1.0 241,737 - MPMX19_00238 0.34 +0.6 241,737 - MPMX19_00238 0.34 -0.2 241,784 + MPMX19_00238 0.40 +0.4 241,784 + MPMX19_00238 0.40 -1.0 241,784 + MPMX19_00238 0.40 -0.5 241,784 + MPMX19_00238 0.40 +1.7 241,784 + MPMX19_00238 0.40 -1.3 241,784 + MPMX19_00238 0.40 -1.9 241,784 + MPMX19_00238 0.40 -1.9 241,784 + MPMX19_00238 0.40 +0.1 241,785 - MPMX19_00238 0.40 +0.4 241,785 - MPMX19_00238 0.40 -0.6 241,785 - MPMX19_00238 0.40 +0.8 241,785 - MPMX19_00238 0.40 -0.2 242,045 + MPMX19_00238 0.73 -0.9 242,045 + MPMX19_00238 0.73 +0.5 242,045 + MPMX19_00238 0.73 +0.4 242,045 + MPMX19_00238 0.73 +0.6 242,045 + MPMX19_00238 0.73 -0.8 242,045 + MPMX19_00238 0.73 +0.1 242,045 + MPMX19_00238 0.73 -0.9 242,045 + MPMX19_00238 0.73 +0.4 242,045 + MPMX19_00238 0.73 +0.9 242,045 + MPMX19_00238 0.73 -0.4 242,045 + MPMX19_00238 0.73 -0.9 242,045 + MPMX19_00238 0.73 -1.0 242,045 + MPMX19_00238 0.73 +0.5 242,045 + MPMX19_00238 0.73 -1.3 242,045 + MPMX19_00238 0.73 -0.1 242,045 + MPMX19_00238 0.73 -0.3 242,045 + MPMX19_00238 0.73 -0.3 242,045 + MPMX19_00238 0.73 -1.0 242,046 - MPMX19_00238 0.73 +0.4 242,046 - MPMX19_00238 0.73 +0.5 242,046 - MPMX19_00238 0.73 -0.6 242,046 - MPMX19_00238 0.73 -0.9 242,046 - MPMX19_00238 0.73 -0.7 242,046 - MPMX19_00238 0.73 -2.1 242,046 - MPMX19_00238 0.73 -0.1 242,046 - MPMX19_00238 0.73 +0.1 242,046 - MPMX19_00238 0.73 -1.3 242,046 - MPMX19_00238 0.73 -0.7 242,046 - MPMX19_00238 0.73 -0.4 242,046 - MPMX19_00238 0.73 -0.0 242,046 - MPMX19_00238 0.73 -1.1 242,046 - MPMX19_00238 0.73 -0.8 242,046 - MPMX19_00238 0.73 -0.5 242,046 - MPMX19_00238 0.73 -0.3 242,046 - MPMX19_00238 0.73 -0.6 242,046 - MPMX19_00238 0.73 -0.3 242,046 - MPMX19_00238 0.73 +1.1 242,066 + MPMX19_00238 0.75 -0.6 242,066 + MPMX19_00238 0.75 -0.1 242,066 + MPMX19_00238 0.75 -0.5 242,066 + MPMX19_00238 0.75 -1.1 242,066 + MPMX19_00238 0.75 +0.4 242,066 + MPMX19_00238 0.75 +1.1 242,066 + MPMX19_00238 0.75 -0.7 242,066 + MPMX19_00238 0.75 +0.1 242,066 + MPMX19_00238 0.75 -1.9 242,066 + MPMX19_00238 0.75 -0.8 242,066 + MPMX19_00238 0.75 +0.3 242,066 + MPMX19_00238 0.75 +1.1 242,066 + MPMX19_00238 0.75 +0.2 242,066 + MPMX19_00238 0.75 +0.7 242,066 + MPMX19_00238 0.75 +0.5 242,066 + MPMX19_00238 0.75 -0.5 242,066 + MPMX19_00238 0.75 -0.3 242,066 + MPMX19_00238 0.75 -0.9 242,066 + MPMX19_00238 0.75 -0.4 242,067 - MPMX19_00238 0.76 -0.3 242,067 - MPMX19_00238 0.76 -1.5 242,067 - MPMX19_00238 0.76 +0.2 242,067 - MPMX19_00238 0.76 +0.1 242,067 - MPMX19_00238 0.76 -0.6 242,067 - MPMX19_00238 0.76 -0.5 242,067 - MPMX19_00238 0.76 +0.3 242,067 - MPMX19_00238 0.76 -0.5 242,067 - MPMX19_00238 0.76 -0.9 242,067 - MPMX19_00238 0.76 -1.2 242,067 - MPMX19_00238 0.76 -1.5 242,067 - MPMX19_00238 0.76 -0.7 242,067 - MPMX19_00238 0.76 -0.2 242,067 - MPMX19_00238 0.76 -0.5 242,067 - MPMX19_00238 0.76 +0.4 242,067 - MPMX19_00238 0.76 -1.2 242,067 - MPMX19_00238 0.76 +0.5 242,067 - MPMX19_00238 0.76 -0.7 242,067 - MPMX19_00238 0.76 -1.2 242,067 - MPMX19_00238 0.76 +0.5 242,067 - MPMX19_00238 0.76 -1.4 242,067 - MPMX19_00238 0.76 -0.4 242,067 - MPMX19_00238 0.76 -0.4 242,067 - MPMX19_00238 0.76 -1.3 242,067 - MPMX19_00238 0.76 -0.3
Or see this region's nucleotide sequence