Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00236

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00234 and MPMX19_00235 are separated by 36 nucleotidesMPMX19_00235 and MPMX19_00236 are separated by 200 nucleotidesMPMX19_00236 and MPMX19_00237 are separated by 109 nucleotides MPMX19_00234: MPMX19_00234 - hypothetical protein, at 238,620 to 239,246 _00234 MPMX19_00235: MPMX19_00235 - hypothetical protein, at 239,283 to 239,576 _00235 MPMX19_00236: MPMX19_00236 - HTH-type transcriptional regulator IscR, at 239,777 to 240,232 _00236 MPMX19_00237: MPMX19_00237 - Cysteine synthase, at 240,342 to 241,301 _00237 Position (kb) 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 238.902 kb on + strand, within MPMX19_00234at 238.902 kb on + strand, within MPMX19_00234at 238.902 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.696 kb on + strandat 239.759 kb on + strandat 239.760 kb on - strandat 239.760 kb on - strandat 239.834 kb on + strand, within MPMX19_00236at 239.834 kb on + strand, within MPMX19_00236at 239.834 kb on + strand, within MPMX19_00236at 239.834 kb on + strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.900 kb on + strand, within MPMX19_00236at 239.900 kb on + strand, within MPMX19_00236at 239.901 kb on - strand, within MPMX19_00236at 239.901 kb on - strand, within MPMX19_00236at 239.901 kb on - strand, within MPMX19_00236at 239.901 kb on - strand, within MPMX19_00236at 240.230 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.373 kb on - strandat 240.373 kb on - strandat 240.633 kb on + strand, within MPMX19_00237at 240.633 kb on + strand, within MPMX19_00237at 240.634 kb on - strand, within MPMX19_00237at 240.634 kb on - strand, within MPMX19_00237at 240.634 kb on - strand, within MPMX19_00237at 240.634 kb on - strand, within MPMX19_00237at 240.634 kb on - strand, within MPMX19_00237at 240.634 kb on - strand, within MPMX19_00237at 240.634 kb on - strand, within MPMX19_00237at 240.789 kb on + strand, within MPMX19_00237at 240.789 kb on + strand, within MPMX19_00237at 240.789 kb on + strand, within MPMX19_00237at 240.789 kb on + strand, within MPMX19_00237at 240.789 kb on + strand, within MPMX19_00237at 240.789 kb on + strand, within MPMX19_00237at 240.789 kb on + strand, within MPMX19_00237at 240.790 kb on - strand, within MPMX19_00237at 240.790 kb on - strand, within MPMX19_00237at 240.790 kb on - strand, within MPMX19_00237at 240.790 kb on - strand, within MPMX19_00237at 240.790 kb on - strand, within MPMX19_00237at 240.790 kb on - strand, within MPMX19_00237

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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238,902 + MPMX19_00234 0.45 -1.2
238,902 + MPMX19_00234 0.45 -0.7
238,902 + MPMX19_00234 0.45 +0.4
238,998 + MPMX19_00234 0.60 -0.3
238,998 + MPMX19_00234 0.60 -3.0
238,998 + MPMX19_00234 0.60 +0.4
238,998 + MPMX19_00234 0.60 -1.0
238,998 + MPMX19_00234 0.60 -0.2
239,282 + -0.6
239,282 + +0.2
239,282 + +0.5
239,282 + +0.0
239,282 + -0.1
239,282 + -0.7
239,282 + +0.6
239,283 - -0.3
239,283 - +0.1
239,283 - +0.1
239,283 - -0.1
239,283 - +0.1
239,283 - -0.2
239,283 - -1.1
239,328 + MPMX19_00235 0.15 -0.6
239,328 + MPMX19_00235 0.15 -0.6
239,328 + MPMX19_00235 0.15 -0.9
239,328 + MPMX19_00235 0.15 -0.4
239,328 + MPMX19_00235 0.15 -0.7
239,328 + MPMX19_00235 0.15 -2.1
239,328 + MPMX19_00235 0.15 -0.7
239,328 + MPMX19_00235 0.15 -1.9
239,328 + MPMX19_00235 0.15 +0.3
239,328 + MPMX19_00235 0.15 -1.3
239,328 + MPMX19_00235 0.15 -1.3
239,328 + MPMX19_00235 0.15 -2.2
239,328 + MPMX19_00235 0.15 +0.7
239,328 + MPMX19_00235 0.15 -1.1
239,328 + MPMX19_00235 0.15 -1.0
239,328 + MPMX19_00235 0.15 -0.9
239,329 - MPMX19_00235 0.16 -0.1
239,329 - MPMX19_00235 0.16 -1.3
239,329 - MPMX19_00235 0.16 -0.1
239,329 - MPMX19_00235 0.16 -0.1
239,329 - MPMX19_00235 0.16 +0.7
239,329 - MPMX19_00235 0.16 +0.1
239,329 - MPMX19_00235 0.16 -0.6
239,329 - MPMX19_00235 0.16 +0.6
239,696 + -0.0
239,759 + +0.5
239,760 - -1.6
239,760 - -0.3
239,834 + MPMX19_00236 0.12 +0.4
239,834 + MPMX19_00236 0.12 -2.0
239,834 + MPMX19_00236 0.12 -1.3
239,834 + MPMX19_00236 0.12 -1.1
239,835 - MPMX19_00236 0.13 -1.7
239,835 - MPMX19_00236 0.13 +0.5
239,835 - MPMX19_00236 0.13 -0.5
239,835 - MPMX19_00236 0.13 -0.6
239,835 - MPMX19_00236 0.13 +0.4
239,900 + MPMX19_00236 0.27 +0.1
239,900 + MPMX19_00236 0.27 -2.3
239,901 - MPMX19_00236 0.27 -0.1
239,901 - MPMX19_00236 0.27 -0.3
239,901 - MPMX19_00236 0.27 -0.3
239,901 - MPMX19_00236 0.27 -1.5
240,230 + +0.5
240,235 + -1.3
240,235 + +1.1
240,235 + -0.2
240,235 + -0.3
240,235 + -0.3
240,235 + +2.3
240,235 + -1.4
240,235 + -1.7
240,235 + -0.9
240,235 + -0.9
240,236 - +0.4
240,236 - -1.1
240,236 - -0.2
240,236 - +0.5
240,236 - +0.5
240,236 - -1.4
240,373 - -0.9
240,373 - -0.3
240,633 + MPMX19_00237 0.30 -0.2
240,633 + MPMX19_00237 0.30 -1.9
240,634 - MPMX19_00237 0.30 -0.6
240,634 - MPMX19_00237 0.30 -1.3
240,634 - MPMX19_00237 0.30 -0.3
240,634 - MPMX19_00237 0.30 +0.0
240,634 - MPMX19_00237 0.30 +1.0
240,634 - MPMX19_00237 0.30 -1.1
240,634 - MPMX19_00237 0.30 -1.6
240,789 + MPMX19_00237 0.47 -1.2
240,789 + MPMX19_00237 0.47 +0.7
240,789 + MPMX19_00237 0.47 +0.7
240,789 + MPMX19_00237 0.47 -0.4
240,789 + MPMX19_00237 0.47 -1.5
240,789 + MPMX19_00237 0.47 +1.1
240,789 + MPMX19_00237 0.47 +0.9
240,790 - MPMX19_00237 0.47 +0.1
240,790 - MPMX19_00237 0.47 -2.3
240,790 - MPMX19_00237 0.47 +0.7
240,790 - MPMX19_00237 0.47 -0.4
240,790 - MPMX19_00237 0.47 +0.4
240,790 - MPMX19_00237 0.47 -0.9

Or see this region's nucleotide sequence