Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00147

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00145 and MPMX19_00146 overlap by 4 nucleotidesMPMX19_00146 and MPMX19_00147 are separated by 68 nucleotidesMPMX19_00147 and MPMX19_00148 are separated by 89 nucleotidesMPMX19_00148 and MPMX19_00149 overlap by 17 nucleotides MPMX19_00145: MPMX19_00145 - DNA adenine methyltransferase YhdJ, at 156,832 to 157,623 _00145 MPMX19_00146: MPMX19_00146 - hypothetical protein, at 157,620 to 157,883 _00146 MPMX19_00147: MPMX19_00147 - hypothetical protein, at 157,952 to 158,698 _00147 MPMX19_00148: MPMX19_00148 - hypothetical protein, at 158,788 to 159,306 _00148 MPMX19_00149: MPMX19_00149 - hypothetical protein, at 159,290 to 159,763 _00149 Position (kb) 157 158 159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 156.985 kb on + strand, within MPMX19_00145at 156.986 kb on - strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.567 kb on + strandat 157.568 kb on - strandat 157.881 kb on + strandat 157.881 kb on + strandat 157.882 kb on - strandat 157.990 kb on - strandat 158.009 kb on + strandat 158.009 kb on + strandat 158.010 kb on - strandat 158.010 kb on - strandat 158.010 kb on - strandat 158.030 kb on + strand, within MPMX19_00147at 158.123 kb on + strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.225 kb on + strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.352 kb on - strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.582 kb on + strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.731 kb on + strandat 158.731 kb on + strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.986 kb on + strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 159.344 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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156,985 + MPMX19_00145 0.19 +0.1
156,986 - MPMX19_00145 0.19 +1.4
157,276 + MPMX19_00145 0.56 -0.1
157,276 + MPMX19_00145 0.56 -0.1
157,276 + MPMX19_00145 0.56 -3.8
157,276 + MPMX19_00145 0.56 -0.4
157,276 + MPMX19_00145 0.56 -0.7
157,276 + MPMX19_00145 0.56 -1.7
157,276 + MPMX19_00145 0.56 +0.4
157,276 + MPMX19_00145 0.56 -0.1
157,276 + MPMX19_00145 0.56 -1.7
157,276 + MPMX19_00145 0.56 -1.7
157,276 + MPMX19_00145 0.56 -0.3
157,276 + MPMX19_00145 0.56 -0.4
157,276 + MPMX19_00145 0.56 -0.3
157,276 + MPMX19_00145 0.56 +0.4
157,277 - MPMX19_00145 0.56 +0.0
157,277 - MPMX19_00145 0.56 -0.7
157,277 - MPMX19_00145 0.56 -1.0
157,277 - MPMX19_00145 0.56 -0.1
157,277 - MPMX19_00145 0.56 -1.3
157,277 - MPMX19_00145 0.56 -1.4
157,277 - MPMX19_00145 0.56 -2.3
157,277 - MPMX19_00145 0.56 -0.3
157,277 - MPMX19_00145 0.56 +0.7
157,277 - MPMX19_00145 0.56 -0.9
157,277 - MPMX19_00145 0.56 -0.9
157,277 - MPMX19_00145 0.56 +0.1
157,277 - MPMX19_00145 0.56 -0.8
157,277 - MPMX19_00145 0.56 -0.1
157,277 - MPMX19_00145 0.56 -1.1
157,567 + -1.0
157,568 - -0.9
157,881 + +0.8
157,881 + -1.4
157,882 - -0.4
157,990 - -0.4
158,009 + -1.1
158,009 + +0.4
158,010 - -0.8
158,010 - +0.1
158,010 - -1.4
158,030 + MPMX19_00147 0.10 -0.0
158,123 + MPMX19_00147 0.23 -0.4
158,124 - MPMX19_00147 0.23 -0.4
158,124 - MPMX19_00147 0.23 -1.9
158,124 - MPMX19_00147 0.23 -0.2
158,124 - MPMX19_00147 0.23 +1.3
158,225 + MPMX19_00147 0.37 -1.6
158,226 - MPMX19_00147 0.37 -3.2
158,226 - MPMX19_00147 0.37 -0.8
158,226 - MPMX19_00147 0.37 -0.9
158,352 - MPMX19_00147 0.54 -2.1
158,420 + MPMX19_00147 0.63 -0.5
158,420 + MPMX19_00147 0.63 -1.0
158,420 + MPMX19_00147 0.63 -1.4
158,421 - MPMX19_00147 0.63 +0.9
158,421 - MPMX19_00147 0.63 -1.4
158,421 - MPMX19_00147 0.63 -1.6
158,478 - MPMX19_00147 0.70 -0.0
158,478 - MPMX19_00147 0.70 +0.3
158,478 - MPMX19_00147 0.70 -1.3
158,478 - MPMX19_00147 0.70 -0.0
158,478 - MPMX19_00147 0.70 -1.4
158,478 - MPMX19_00147 0.70 +2.3
158,526 - MPMX19_00147 0.77 -0.9
158,526 - MPMX19_00147 0.77 -0.6
158,526 - MPMX19_00147 0.77 -0.7
158,526 - MPMX19_00147 0.77 -0.1
158,526 - MPMX19_00147 0.77 -2.0
158,526 - MPMX19_00147 0.77 -0.3
158,526 - MPMX19_00147 0.77 -0.2
158,526 - MPMX19_00147 0.77 -1.4
158,526 - MPMX19_00147 0.77 -1.0
158,526 - MPMX19_00147 0.77 +0.9
158,526 - MPMX19_00147 0.77 +0.3
158,526 - MPMX19_00147 0.77 +0.5
158,526 - MPMX19_00147 0.77 -0.2
158,526 - MPMX19_00147 0.77 -1.9
158,526 - MPMX19_00147 0.77 +1.1
158,582 + MPMX19_00147 0.84 -0.8
158,583 - MPMX19_00147 0.84 +0.5
158,583 - MPMX19_00147 0.84 +0.3
158,583 - MPMX19_00147 0.84 -0.2
158,731 + -0.1
158,731 + +0.3
158,732 - -0.9
158,732 - -1.2
158,732 - -1.3
158,732 - +0.6
158,787 + +1.5
158,787 + -1.1
158,787 + -2.0
158,787 + -1.4
158,787 + -0.1
158,788 - +0.9
158,788 - -1.1
158,788 - +2.1
158,788 - -0.7
158,788 - -0.9
158,788 - -0.6
158,788 - -2.7
158,986 + MPMX19_00148 0.38 -1.1
158,987 - MPMX19_00148 0.38 -2.2
158,987 - MPMX19_00148 0.38 +0.0
158,987 - MPMX19_00148 0.38 -0.7
159,344 + MPMX19_00149 0.11 -0.2
159,497 + MPMX19_00149 0.44 -2.7
159,497 + MPMX19_00149 0.44 -0.2
159,497 + MPMX19_00149 0.44 -2.4
159,498 - MPMX19_00149 0.44 -1.4
159,498 - MPMX19_00149 0.44 -0.3
159,498 - MPMX19_00149 0.44 -0.5
159,498 - MPMX19_00149 0.44 -0.2
159,498 - MPMX19_00149 0.44 -1.6
159,498 - MPMX19_00149 0.44 +1.0
159,498 - MPMX19_00149 0.44 -0.4
159,503 + MPMX19_00149 0.45 -0.0
159,503 + MPMX19_00149 0.45 -2.5
159,503 + MPMX19_00149 0.45 -0.1
159,582 - MPMX19_00149 0.62 -1.3
159,582 - MPMX19_00149 0.62 -0.6
159,611 + MPMX19_00149 0.68 +0.2
159,611 + MPMX19_00149 0.68 -0.2
159,612 - MPMX19_00149 0.68 +0.5
159,612 - MPMX19_00149 0.68 -2.1
159,612 - MPMX19_00149 0.68 -0.3

Or see this region's nucleotide sequence