Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00143 and MPMX19_00144 are separated by 1 nucleotides MPMX19_00144 and MPMX19_00145 are separated by 72 nucleotides MPMX19_00145 and MPMX19_00146 overlap by 4 nucleotides MPMX19_00146 and MPMX19_00147 are separated by 68 nucleotides
MPMX19_00143: MPMX19_00143 - Tyrosine recombinase XerC, at 155,253 to 156,251
_00143
MPMX19_00144: MPMX19_00144 - hypothetical protein, at 156,253 to 156,759
_00144
MPMX19_00145: MPMX19_00145 - DNA adenine methyltransferase YhdJ, at 156,832 to 157,623
_00145
MPMX19_00146: MPMX19_00146 - hypothetical protein, at 157,620 to 157,883
_00146
MPMX19_00147: MPMX19_00147 - hypothetical protein, at 157,952 to 158,698
_00147
Position (kb) 156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.193 kb on - strand at 156.193 kb on - strand at 156.193 kb on - strand at 156.193 kb on - strand at 156.400 kb on + strand, within MPMX19_00144 at 156.400 kb on + strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.464 kb on - strand, within MPMX19_00144 at 156.784 kb on + strand at 156.946 kb on + strand, within MPMX19_00145 at 156.947 kb on - strand, within MPMX19_00145 at 156.985 kb on + strand, within MPMX19_00145 at 156.986 kb on - strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.567 kb on + strand at 157.568 kb on - strand at 157.881 kb on + strand at 157.881 kb on + strand at 157.882 kb on - strand at 157.990 kb on - strand at 158.009 kb on + strand at 158.009 kb on + strand at 158.010 kb on - strand at 158.010 kb on - strand at 158.010 kb on - strand at 158.030 kb on + strand, within MPMX19_00147 at 158.123 kb on + strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.225 kb on + strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.352 kb on - strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.582 kb on + strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 155,842 - MPMX19_00143 0.59 -1.9 155,842 - MPMX19_00143 0.59 +0.5 155,842 - MPMX19_00143 0.59 -0.9 155,842 - MPMX19_00143 0.59 -0.9 155,842 - MPMX19_00143 0.59 +0.6 155,842 - MPMX19_00143 0.59 -0.3 156,034 - MPMX19_00143 0.78 -0.3 156,034 - MPMX19_00143 0.78 +0.1 156,034 - MPMX19_00143 0.78 +0.4 156,034 - MPMX19_00143 0.78 +0.1 156,034 - MPMX19_00143 0.78 +0.6 156,034 - MPMX19_00143 0.78 -0.4 156,034 - MPMX19_00143 0.78 -0.8 156,034 - MPMX19_00143 0.78 -0.6 156,193 - -0.2 156,193 - -1.4 156,193 - -1.6 156,193 - -1.1 156,400 + MPMX19_00144 0.29 +0.5 156,400 + MPMX19_00144 0.29 +0.9 156,401 - MPMX19_00144 0.29 -0.4 156,401 - MPMX19_00144 0.29 -0.5 156,401 - MPMX19_00144 0.29 -2.0 156,401 - MPMX19_00144 0.29 -0.4 156,401 - MPMX19_00144 0.29 -2.2 156,401 - MPMX19_00144 0.29 -1.3 156,401 - MPMX19_00144 0.29 -0.7 156,464 - MPMX19_00144 0.42 -1.0 156,784 + -0.6 156,946 + MPMX19_00145 0.14 -2.7 156,947 - MPMX19_00145 0.15 -0.6 156,985 + MPMX19_00145 0.19 +0.1 156,986 - MPMX19_00145 0.19 +1.4 157,276 + MPMX19_00145 0.56 -0.1 157,276 + MPMX19_00145 0.56 -0.1 157,276 + MPMX19_00145 0.56 -3.8 157,276 + MPMX19_00145 0.56 -0.4 157,276 + MPMX19_00145 0.56 -0.7 157,276 + MPMX19_00145 0.56 -1.7 157,276 + MPMX19_00145 0.56 +0.4 157,276 + MPMX19_00145 0.56 -0.1 157,276 + MPMX19_00145 0.56 -1.7 157,276 + MPMX19_00145 0.56 -1.7 157,276 + MPMX19_00145 0.56 -0.3 157,276 + MPMX19_00145 0.56 -0.4 157,276 + MPMX19_00145 0.56 -0.3 157,276 + MPMX19_00145 0.56 +0.4 157,277 - MPMX19_00145 0.56 +0.0 157,277 - MPMX19_00145 0.56 -0.7 157,277 - MPMX19_00145 0.56 -1.0 157,277 - MPMX19_00145 0.56 -0.1 157,277 - MPMX19_00145 0.56 -1.3 157,277 - MPMX19_00145 0.56 -1.4 157,277 - MPMX19_00145 0.56 -2.3 157,277 - MPMX19_00145 0.56 -0.3 157,277 - MPMX19_00145 0.56 +0.7 157,277 - MPMX19_00145 0.56 -0.9 157,277 - MPMX19_00145 0.56 -0.9 157,277 - MPMX19_00145 0.56 +0.1 157,277 - MPMX19_00145 0.56 -0.8 157,277 - MPMX19_00145 0.56 -0.1 157,277 - MPMX19_00145 0.56 -1.1 157,567 + -1.0 157,568 - -0.9 157,881 + +0.8 157,881 + -1.4 157,882 - -0.4 157,990 - -0.4 158,009 + -1.1 158,009 + +0.4 158,010 - -0.8 158,010 - +0.1 158,010 - -1.4 158,030 + MPMX19_00147 0.10 -0.0 158,123 + MPMX19_00147 0.23 -0.4 158,124 - MPMX19_00147 0.23 -0.4 158,124 - MPMX19_00147 0.23 -1.9 158,124 - MPMX19_00147 0.23 -0.2 158,124 - MPMX19_00147 0.23 +1.3 158,225 + MPMX19_00147 0.37 -1.6 158,226 - MPMX19_00147 0.37 -3.2 158,226 - MPMX19_00147 0.37 -0.8 158,226 - MPMX19_00147 0.37 -0.9 158,352 - MPMX19_00147 0.54 -2.1 158,420 + MPMX19_00147 0.63 -0.5 158,420 + MPMX19_00147 0.63 -1.0 158,420 + MPMX19_00147 0.63 -1.4 158,421 - MPMX19_00147 0.63 +0.9 158,421 - MPMX19_00147 0.63 -1.4 158,421 - MPMX19_00147 0.63 -1.6 158,478 - MPMX19_00147 0.70 -0.0 158,478 - MPMX19_00147 0.70 +0.3 158,478 - MPMX19_00147 0.70 -1.3 158,478 - MPMX19_00147 0.70 -0.0 158,478 - MPMX19_00147 0.70 -1.4 158,478 - MPMX19_00147 0.70 +2.3 158,526 - MPMX19_00147 0.77 -0.9 158,526 - MPMX19_00147 0.77 -0.6 158,526 - MPMX19_00147 0.77 -0.7 158,526 - MPMX19_00147 0.77 -0.1 158,526 - MPMX19_00147 0.77 -2.0 158,526 - MPMX19_00147 0.77 -0.3 158,526 - MPMX19_00147 0.77 -0.2 158,526 - MPMX19_00147 0.77 -1.4 158,526 - MPMX19_00147 0.77 -1.0 158,526 - MPMX19_00147 0.77 +0.9 158,526 - MPMX19_00147 0.77 +0.3 158,526 - MPMX19_00147 0.77 +0.5 158,526 - MPMX19_00147 0.77 -0.2 158,526 - MPMX19_00147 0.77 -1.9 158,526 - MPMX19_00147 0.77 +1.1 158,582 + MPMX19_00147 0.84 -0.8 158,583 - MPMX19_00147 0.84 +0.5 158,583 - MPMX19_00147 0.84 +0.3 158,583 - MPMX19_00147 0.84 -0.2
Or see this region's nucleotide sequence