Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00068

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00067 and MPMX19_00068 are separated by 37 nucleotidesMPMX19_00068 and MPMX19_00069 are separated by 93 nucleotides MPMX19_00067: MPMX19_00067 - Sensor histidine kinase RcsC, at 68,889 to 71,009 _00067 MPMX19_00068: MPMX19_00068 - hypothetical protein, at 71,047 to 71,268 _00068 MPMX19_00069: MPMX19_00069 - Cation/acetate symporter ActP, at 71,362 to 73,044 _00069 Position (kb) 71 72Strain fitness (log2 ratio) -2 -1 0 1at 70.104 kb on + strand, within MPMX19_00067at 70.105 kb on - strand, within MPMX19_00067at 70.167 kb on + strand, within MPMX19_00067at 70.167 kb on + strand, within MPMX19_00067at 70.167 kb on + strand, within MPMX19_00067at 70.167 kb on + strand, within MPMX19_00067at 70.167 kb on + strand, within MPMX19_00067at 70.167 kb on + strand, within MPMX19_00067at 70.167 kb on + strand, within MPMX19_00067at 70.167 kb on + strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.168 kb on - strand, within MPMX19_00067at 70.410 kb on + strand, within MPMX19_00067at 70.410 kb on + strand, within MPMX19_00067at 70.410 kb on + strand, within MPMX19_00067at 70.410 kb on + strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.411 kb on - strand, within MPMX19_00067at 70.497 kb on + strand, within MPMX19_00067at 70.497 kb on + strand, within MPMX19_00067at 70.497 kb on + strand, within MPMX19_00067at 70.498 kb on - strand, within MPMX19_00067at 70.498 kb on - strand, within MPMX19_00067at 71.007 kb on + strandat 71.007 kb on + strandat 71.007 kb on + strandat 71.007 kb on + strandat 71.008 kb on - strandat 71.008 kb on - strandat 71.107 kb on + strand, within MPMX19_00068at 71.107 kb on + strand, within MPMX19_00068at 71.107 kb on + strand, within MPMX19_00068at 71.107 kb on + strand, within MPMX19_00068at 71.107 kb on + strand, within MPMX19_00068at 71.107 kb on + strand, within MPMX19_00068at 71.107 kb on + strand, within MPMX19_00068at 71.107 kb on + strand, within MPMX19_00068at 71.108 kb on - strand, within MPMX19_00068at 71.108 kb on - strand, within MPMX19_00068at 71.108 kb on - strand, within MPMX19_00068at 71.108 kb on - strand, within MPMX19_00068at 71.109 kb on + strand, within MPMX19_00068at 71.109 kb on + strand, within MPMX19_00068at 71.109 kb on + strand, within MPMX19_00068at 71.109 kb on + strand, within MPMX19_00068at 71.109 kb on + strand, within MPMX19_00068at 71.109 kb on + strand, within MPMX19_00068at 71.110 kb on - strand, within MPMX19_00068at 71.110 kb on - strand, within MPMX19_00068at 71.110 kb on - strand, within MPMX19_00068at 71.110 kb on - strand, within MPMX19_00068at 71.110 kb on - strand, within MPMX19_00068at 71.110 kb on - strand, within MPMX19_00068at 71.200 kb on + strand, within MPMX19_00068at 71.200 kb on + strand, within MPMX19_00068at 71.201 kb on - strand, within MPMX19_00068at 71.525 kb on + strandat 71.525 kb on + strandat 71.526 kb on - strandat 71.526 kb on - strandat 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.657 kb on + strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.658 kb on - strand, within MPMX19_00069at 71.852 kb on + strand, within MPMX19_00069at 71.852 kb on + strand, within MPMX19_00069at 71.852 kb on + strand, within MPMX19_00069at 71.852 kb on + strand, within MPMX19_00069at 71.852 kb on + strand, within MPMX19_00069at 71.852 kb on + strand, within MPMX19_00069at 71.853 kb on - strand, within MPMX19_00069at 71.853 kb on - strand, within MPMX19_00069at 71.853 kb on - strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.125 kb on + strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069at 72.126 kb on - strand, within MPMX19_00069

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
70,104 + MPMX19_00067 0.57 -0.8
70,105 - MPMX19_00067 0.57 -1.0
70,167 + MPMX19_00067 0.60 +1.1
70,167 + MPMX19_00067 0.60 +0.0
70,167 + MPMX19_00067 0.60 -1.3
70,167 + MPMX19_00067 0.60 -1.6
70,167 + MPMX19_00067 0.60 +0.6
70,167 + MPMX19_00067 0.60 -0.9
70,167 + MPMX19_00067 0.60 -0.1
70,167 + MPMX19_00067 0.60 +0.1
70,168 - MPMX19_00067 0.60 -0.4
70,168 - MPMX19_00067 0.60 -0.3
70,168 - MPMX19_00067 0.60 -1.9
70,168 - MPMX19_00067 0.60 -0.9
70,168 - MPMX19_00067 0.60 -0.9
70,168 - MPMX19_00067 0.60 -0.5
70,168 - MPMX19_00067 0.60 -1.1
70,168 - MPMX19_00067 0.60 +0.7
70,168 - MPMX19_00067 0.60 -0.6
70,410 + MPMX19_00067 0.72 -0.1
70,410 + MPMX19_00067 0.72 -0.3
70,410 + MPMX19_00067 0.72 -1.1
70,410 + MPMX19_00067 0.72 -1.2
70,411 - MPMX19_00067 0.72 +0.1
70,411 - MPMX19_00067 0.72 -0.1
70,411 - MPMX19_00067 0.72 -1.4
70,411 - MPMX19_00067 0.72 +0.6
70,411 - MPMX19_00067 0.72 -0.7
70,411 - MPMX19_00067 0.72 +0.6
70,411 - MPMX19_00067 0.72 -0.5
70,411 - MPMX19_00067 0.72 -0.3
70,411 - MPMX19_00067 0.72 +0.1
70,411 - MPMX19_00067 0.72 -2.4
70,411 - MPMX19_00067 0.72 -0.2
70,411 - MPMX19_00067 0.72 +0.2
70,411 - MPMX19_00067 0.72 -0.3
70,497 + MPMX19_00067 0.76 -0.3
70,497 + MPMX19_00067 0.76 -1.4
70,497 + MPMX19_00067 0.76 -1.3
70,498 - MPMX19_00067 0.76 +0.7
70,498 - MPMX19_00067 0.76 +0.4
71,007 + -0.3
71,007 + -1.6
71,007 + -1.4
71,007 + -1.0
71,008 - +0.1
71,008 - -1.1
71,107 + MPMX19_00068 0.27 -0.2
71,107 + MPMX19_00068 0.27 +0.1
71,107 + MPMX19_00068 0.27 -1.6
71,107 + MPMX19_00068 0.27 +0.7
71,107 + MPMX19_00068 0.27 -0.6
71,107 + MPMX19_00068 0.27 -1.1
71,107 + MPMX19_00068 0.27 -0.8
71,107 + MPMX19_00068 0.27 -1.7
71,108 - MPMX19_00068 0.27 +0.8
71,108 - MPMX19_00068 0.27 -0.0
71,108 - MPMX19_00068 0.27 +0.5
71,108 - MPMX19_00068 0.27 +0.4
71,109 + MPMX19_00068 0.28 +0.1
71,109 + MPMX19_00068 0.28 -0.2
71,109 + MPMX19_00068 0.28 +0.4
71,109 + MPMX19_00068 0.28 +0.6
71,109 + MPMX19_00068 0.28 +0.7
71,109 + MPMX19_00068 0.28 -0.8
71,110 - MPMX19_00068 0.28 -0.4
71,110 - MPMX19_00068 0.28 +0.1
71,110 - MPMX19_00068 0.28 +1.1
71,110 - MPMX19_00068 0.28 -0.3
71,110 - MPMX19_00068 0.28 +0.6
71,110 - MPMX19_00068 0.28 -0.1
71,200 + MPMX19_00068 0.69 +0.8
71,200 + MPMX19_00068 0.69 -1.4
71,201 - MPMX19_00068 0.69 +0.3
71,525 + -2.0
71,525 + -0.1
71,526 - -1.0
71,526 - +0.3
71,657 + MPMX19_00069 0.18 -1.1
71,657 + MPMX19_00069 0.18 -0.7
71,657 + MPMX19_00069 0.18 +0.2
71,657 + MPMX19_00069 0.18 -0.2
71,657 + MPMX19_00069 0.18 -0.3
71,657 + MPMX19_00069 0.18 -0.7
71,657 + MPMX19_00069 0.18 -0.0
71,657 + MPMX19_00069 0.18 -0.8
71,657 + MPMX19_00069 0.18 +0.6
71,657 + MPMX19_00069 0.18 -0.4
71,657 + MPMX19_00069 0.18 -0.5
71,657 + MPMX19_00069 0.18 +0.6
71,657 + MPMX19_00069 0.18 -1.3
71,657 + MPMX19_00069 0.18 -2.4
71,658 - MPMX19_00069 0.18 -1.2
71,658 - MPMX19_00069 0.18 -1.0
71,658 - MPMX19_00069 0.18 +0.2
71,658 - MPMX19_00069 0.18 -0.3
71,658 - MPMX19_00069 0.18 -0.4
71,658 - MPMX19_00069 0.18 +0.1
71,658 - MPMX19_00069 0.18 -0.0
71,658 - MPMX19_00069 0.18 -0.2
71,658 - MPMX19_00069 0.18 -0.1
71,658 - MPMX19_00069 0.18 -2.2
71,658 - MPMX19_00069 0.18 +1.1
71,658 - MPMX19_00069 0.18 -0.4
71,658 - MPMX19_00069 0.18 +0.7
71,658 - MPMX19_00069 0.18 +0.6
71,658 - MPMX19_00069 0.18 -0.9
71,658 - MPMX19_00069 0.18 -1.6
71,658 - MPMX19_00069 0.18 -0.4
71,658 - MPMX19_00069 0.18 +0.5
71,852 + MPMX19_00069 0.29 +0.7
71,852 + MPMX19_00069 0.29 +0.6
71,852 + MPMX19_00069 0.29 +0.6
71,852 + MPMX19_00069 0.29 +1.7
71,852 + MPMX19_00069 0.29 +0.6
71,852 + MPMX19_00069 0.29 +0.6
71,853 - MPMX19_00069 0.29 +0.7
71,853 - MPMX19_00069 0.29 -1.9
71,853 - MPMX19_00069 0.29 +0.2
72,125 + MPMX19_00069 0.45 -1.2
72,125 + MPMX19_00069 0.45 -0.6
72,125 + MPMX19_00069 0.45 -1.7
72,125 + MPMX19_00069 0.45 +0.3
72,125 + MPMX19_00069 0.45 -0.5
72,125 + MPMX19_00069 0.45 +0.5
72,125 + MPMX19_00069 0.45 -0.4
72,125 + MPMX19_00069 0.45 -0.8
72,125 + MPMX19_00069 0.45 +1.3
72,125 + MPMX19_00069 0.45 -0.8
72,125 + MPMX19_00069 0.45 -1.4
72,125 + MPMX19_00069 0.45 +0.7
72,125 + MPMX19_00069 0.45 +0.1
72,126 - MPMX19_00069 0.45 -0.0
72,126 - MPMX19_00069 0.45 -1.3
72,126 - MPMX19_00069 0.45 -0.6
72,126 - MPMX19_00069 0.45 +0.5
72,126 - MPMX19_00069 0.45 -1.9
72,126 - MPMX19_00069 0.45 -0.7
72,126 - MPMX19_00069 0.45 -0.9
72,126 - MPMX19_00069 0.45 -1.6
72,126 - MPMX19_00069 0.45 -1.8
72,126 - MPMX19_00069 0.45 -0.1
72,126 - MPMX19_00069 0.45 -0.3
72,126 - MPMX19_00069 0.45 -0.3
72,126 - MPMX19_00069 0.45 +0.6
72,126 - MPMX19_00069 0.45 -0.7

Or see this region's nucleotide sequence