Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00048 and MPMX19_00049 overlap by 4 nucleotides MPMX19_00049 and MPMX19_00050 are separated by 27 nucleotides MPMX19_00050 and MPMX19_00051 are separated by 231 nucleotides MPMX19_00051 and MPMX19_00052 are separated by 76 nucleotides
MPMX19_00048: MPMX19_00048 - hypothetical protein, at 50,637 to 51,605
_00048
MPMX19_00049: MPMX19_00049 - hypothetical protein, at 51,602 to 52,165
_00049
MPMX19_00050: MPMX19_00050 - Pyridoxal phosphate homeostasis protein, at 52,193 to 52,873
_00050
MPMX19_00051: MPMX19_00051 - hypothetical protein, at 53,105 to 53,689
_00051
MPMX19_00052: MPMX19_00052 - hypothetical protein, at 53,766 to 54,854
_00052
Position (kb) 52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.339 kb on + strand, within MPMX19_00048 at 51.340 kb on - strand, within MPMX19_00048 at 51.340 kb on - strand, within MPMX19_00048 at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.902 kb on + strand, within MPMX19_00049 at 51.902 kb on + strand, within MPMX19_00049 at 51.902 kb on + strand, within MPMX19_00049 at 51.902 kb on + strand, within MPMX19_00049 at 51.903 kb on - strand, within MPMX19_00049 at 51.903 kb on - strand, within MPMX19_00049 at 51.903 kb on - strand, within MPMX19_00049 at 51.968 kb on + strand, within MPMX19_00049 at 51.968 kb on + strand, within MPMX19_00049 at 51.968 kb on + strand, within MPMX19_00049 at 51.968 kb on + strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 52.194 kb on + strand at 52.194 kb on + strand at 52.194 kb on + strand at 52.194 kb on + strand at 52.194 kb on + strand at 52.194 kb on + strand at 52.195 kb on - strand at 52.195 kb on - strand at 52.195 kb on - strand at 52.195 kb on - strand at 52.275 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.876 kb on + strand at 52.876 kb on + strand at 52.876 kb on + strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.906 kb on + strand at 52.907 kb on - strand at 52.907 kb on - strand at 52.907 kb on - strand at 52.907 kb on - strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.402 kb on + strand, within MPMX19_00051 at 53.402 kb on + strand, within MPMX19_00051 at 53.402 kb on + strand, within MPMX19_00051 at 53.403 kb on - strand, within MPMX19_00051 at 53.403 kb on - strand, within MPMX19_00051 at 53.501 kb on + strand, within MPMX19_00051 at 53.501 kb on + strand, within MPMX19_00051 at 53.501 kb on + strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.598 kb on - strand, within MPMX19_00051 at 53.598 kb on - strand, within MPMX19_00051 at 53.598 kb on - strand, within MPMX19_00051 at 53.598 kb on - strand, within MPMX19_00051 at 53.687 kb on + strand at 53.687 kb on + strand at 53.687 kb on + strand at 53.687 kb on + strand at 53.688 kb on - strand at 53.688 kb on - strand at 53.688 kb on - strand at 53.688 kb on - strand at 53.742 kb on + strand at 53.814 kb on + strand at 53.815 kb on - strand at 53.815 kb on - strand at 53.840 kb on - strand at 53.840 kb on - strand at 53.840 kb on - strand at 53.840 kb on - strand at 53.840 kb on - strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 51,339 + MPMX19_00048 0.72 -0.9 51,340 - MPMX19_00048 0.73 +1.7 51,340 - MPMX19_00048 0.73 -0.0 51,546 + -1.4 51,546 + +0.1 51,546 + -0.9 51,546 + +0.1 51,546 + +0.6 51,546 + -0.4 51,546 + +1.3 51,546 + -1.0 51,546 + -0.4 51,546 + -1.0 51,546 + -0.5 51,546 + +0.2 51,546 + -0.4 51,546 + -0.2 51,546 + -0.9 51,546 + +0.3 51,546 + -0.0 51,547 - +0.2 51,547 - -0.6 51,547 - -1.1 51,547 - -0.9 51,547 - +0.7 51,547 - +0.3 51,547 - +0.2 51,547 - -1.1 51,547 - -0.9 51,547 - +0.3 51,547 - +0.2 51,547 - -1.1 51,547 - -0.9 51,902 + MPMX19_00049 0.53 -0.3 51,902 + MPMX19_00049 0.53 +0.1 51,902 + MPMX19_00049 0.53 +0.5 51,902 + MPMX19_00049 0.53 -0.4 51,903 - MPMX19_00049 0.53 +0.4 51,903 - MPMX19_00049 0.53 -2.1 51,903 - MPMX19_00049 0.53 -0.6 51,968 + MPMX19_00049 0.65 +0.1 51,968 + MPMX19_00049 0.65 +1.1 51,968 + MPMX19_00049 0.65 +1.1 51,968 + MPMX19_00049 0.65 -1.4 51,969 - MPMX19_00049 0.65 -0.3 51,969 - MPMX19_00049 0.65 -0.2 51,969 - MPMX19_00049 0.65 -0.4 51,969 - MPMX19_00049 0.65 +2.3 51,969 - MPMX19_00049 0.65 -1.0 51,969 - MPMX19_00049 0.65 +0.0 51,969 - MPMX19_00049 0.65 -1.1 52,194 + -1.4 52,194 + -0.1 52,194 + +1.9 52,194 + -1.3 52,194 + -2.0 52,194 + +0.7 52,195 - +0.7 52,195 - +1.5 52,195 - -0.4 52,195 - -0.9 52,275 + MPMX19_00050 0.12 -1.3 52,789 + MPMX19_00050 0.88 -1.3 52,789 + MPMX19_00050 0.88 -1.6 52,789 + MPMX19_00050 0.88 -0.3 52,789 + MPMX19_00050 0.88 -2.2 52,789 + MPMX19_00050 0.88 -0.3 52,789 + MPMX19_00050 0.88 -1.9 52,790 - MPMX19_00050 0.88 -1.7 52,790 - MPMX19_00050 0.88 -0.9 52,790 - MPMX19_00050 0.88 -0.4 52,790 - MPMX19_00050 0.88 -1.4 52,790 - MPMX19_00050 0.88 -0.4 52,790 - MPMX19_00050 0.88 +1.3 52,876 + -0.4 52,876 + -0.1 52,876 + -0.4 52,877 - +0.1 52,877 - -0.6 52,877 - +0.0 52,877 - -1.7 52,877 - +0.4 52,877 - -0.7 52,906 + -1.9 52,907 - -1.6 52,907 - -0.4 52,907 - -0.3 52,907 - -1.7 52,966 + -0.9 52,966 + -0.1 52,966 + -1.3 52,966 + -1.4 52,966 + -1.3 52,966 + -0.3 52,966 + -0.6 52,966 + +0.6 52,966 + -0.8 52,966 + -1.5 52,967 - -1.0 52,967 - +0.7 52,967 - -1.1 52,967 - +0.1 52,967 - -0.2 52,967 - +1.1 52,967 - +0.9 52,967 - +0.1 52,967 - -0.1 52,967 - -0.6 52,967 - -1.0 52,967 - +0.1 53,369 + MPMX19_00051 0.45 -0.0 53,369 + MPMX19_00051 0.45 -0.9 53,369 + MPMX19_00051 0.45 -0.3 53,369 + MPMX19_00051 0.45 -0.2 53,369 + MPMX19_00051 0.45 +0.7 53,369 + MPMX19_00051 0.45 +0.1 53,369 + MPMX19_00051 0.45 -1.4 53,369 + MPMX19_00051 0.45 -0.8 53,370 - MPMX19_00051 0.45 -0.5 53,370 - MPMX19_00051 0.45 -0.7 53,370 - MPMX19_00051 0.45 -0.9 53,370 - MPMX19_00051 0.45 -0.2 53,370 - MPMX19_00051 0.45 -0.9 53,370 - MPMX19_00051 0.45 -1.2 53,370 - MPMX19_00051 0.45 -0.3 53,370 - MPMX19_00051 0.45 +1.2 53,370 - MPMX19_00051 0.45 -1.7 53,402 + MPMX19_00051 0.51 -0.5 53,402 + MPMX19_00051 0.51 -0.4 53,402 + MPMX19_00051 0.51 -0.5 53,403 - MPMX19_00051 0.51 -2.5 53,403 - MPMX19_00051 0.51 -2.1 53,501 + MPMX19_00051 0.68 +0.7 53,501 + MPMX19_00051 0.68 -0.3 53,501 + MPMX19_00051 0.68 -1.5 53,502 - MPMX19_00051 0.68 +0.5 53,502 - MPMX19_00051 0.68 -0.7 53,502 - MPMX19_00051 0.68 -0.1 53,502 - MPMX19_00051 0.68 +0.4 53,502 - MPMX19_00051 0.68 -0.5 53,502 - MPMX19_00051 0.68 -0.4 53,597 + MPMX19_00051 0.84 -0.8 53,597 + MPMX19_00051 0.84 -0.4 53,597 + MPMX19_00051 0.84 +0.4 53,597 + MPMX19_00051 0.84 -1.7 53,597 + MPMX19_00051 0.84 -1.0 53,597 + MPMX19_00051 0.84 +0.4 53,597 + MPMX19_00051 0.84 -0.9 53,598 - MPMX19_00051 0.84 -0.9 53,598 - MPMX19_00051 0.84 +0.1 53,598 - MPMX19_00051 0.84 +0.1 53,598 - MPMX19_00051 0.84 -1.7 53,687 + +0.0 53,687 + +0.1 53,687 + -0.9 53,687 + +0.5 53,688 - +1.1 53,688 - -0.8 53,688 - +0.6 53,688 - +0.1 53,742 + -1.1 53,814 + +0.1 53,815 - -1.4 53,815 - -1.1 53,840 - -0.4 53,840 - -1.2 53,840 - -0.3 53,840 - -1.5 53,840 - -0.9 53,845 + +0.0 53,845 + -0.3 53,845 + +1.0 53,845 + -0.1 53,845 + +1.2 53,845 + -3.0 53,845 + -2.5 53,845 + +1.0 53,845 + +1.0 53,846 - -1.6 53,846 - -0.3 53,846 - -0.4 53,846 - +0.6 53,846 - +0.1 53,846 - -1.9 53,846 - -0.6 53,846 - +0.9 53,846 - -2.4
Or see this region's nucleotide sequence