Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00048

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00047 and MPMX19_00048 are separated by 217 nucleotidesMPMX19_00048 and MPMX19_00049 overlap by 4 nucleotidesMPMX19_00049 and MPMX19_00050 are separated by 27 nucleotides MPMX19_00047: MPMX19_00047 - Riboflavin biosynthesis protein RibBA, at 49,073 to 50,419 _00047 MPMX19_00048: MPMX19_00048 - hypothetical protein, at 50,637 to 51,605 _00048 MPMX19_00049: MPMX19_00049 - hypothetical protein, at 51,602 to 52,165 _00049 MPMX19_00050: MPMX19_00050 - Pyridoxal phosphate homeostasis protein, at 52,193 to 52,873 _00050 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.490 kb on + strandat 50.490 kb on + strandat 50.490 kb on + strandat 50.491 kb on - strandat 50.491 kb on - strandat 50.491 kb on - strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.823 kb on + strand, within MPMX19_00048at 50.823 kb on + strand, within MPMX19_00048at 50.823 kb on + strand, within MPMX19_00048at 50.824 kb on - strand, within MPMX19_00048at 50.824 kb on - strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 51.339 kb on + strand, within MPMX19_00048at 51.340 kb on - strand, within MPMX19_00048at 51.340 kb on - strand, within MPMX19_00048at 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.546 kb on + strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.547 kb on - strandat 51.902 kb on + strand, within MPMX19_00049at 51.902 kb on + strand, within MPMX19_00049at 51.902 kb on + strand, within MPMX19_00049at 51.902 kb on + strand, within MPMX19_00049at 51.903 kb on - strand, within MPMX19_00049at 51.903 kb on - strand, within MPMX19_00049at 51.903 kb on - strand, within MPMX19_00049at 51.968 kb on + strand, within MPMX19_00049at 51.968 kb on + strand, within MPMX19_00049at 51.968 kb on + strand, within MPMX19_00049at 51.968 kb on + strand, within MPMX19_00049at 51.969 kb on - strand, within MPMX19_00049at 51.969 kb on - strand, within MPMX19_00049at 51.969 kb on - strand, within MPMX19_00049at 51.969 kb on - strand, within MPMX19_00049at 51.969 kb on - strand, within MPMX19_00049at 51.969 kb on - strand, within MPMX19_00049at 51.969 kb on - strand, within MPMX19_00049at 52.194 kb on + strandat 52.194 kb on + strandat 52.194 kb on + strandat 52.194 kb on + strandat 52.194 kb on + strandat 52.194 kb on + strandat 52.195 kb on - strandat 52.195 kb on - strandat 52.195 kb on - strandat 52.195 kb on - strandat 52.275 kb on + strand, within MPMX19_00050

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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50,490 + +0.1
50,490 + +0.0
50,490 + +1.6
50,491 - -0.4
50,491 - -0.1
50,491 - -0.4
50,601 + +0.0
50,601 + -0.5
50,601 + -0.6
50,601 + -0.0
50,602 - +0.1
50,602 - -0.0
50,602 - -3.1
50,602 - -1.9
50,823 + MPMX19_00048 0.19 -0.2
50,823 + MPMX19_00048 0.19 +0.1
50,823 + MPMX19_00048 0.19 -0.5
50,824 - MPMX19_00048 0.19 -0.8
50,824 - MPMX19_00048 0.19 -1.0
50,883 + MPMX19_00048 0.25 +0.1
50,883 + MPMX19_00048 0.25 -0.9
50,883 + MPMX19_00048 0.25 +0.4
50,883 + MPMX19_00048 0.25 +0.4
50,883 + MPMX19_00048 0.25 -1.1
50,883 + MPMX19_00048 0.25 -0.2
50,883 + MPMX19_00048 0.25 -0.9
50,883 + MPMX19_00048 0.25 -0.8
50,883 + MPMX19_00048 0.25 -0.7
50,883 + MPMX19_00048 0.25 +0.4
50,883 + MPMX19_00048 0.25 +0.3
50,884 - MPMX19_00048 0.25 -1.3
50,884 - MPMX19_00048 0.25 -1.4
50,884 - MPMX19_00048 0.25 -0.1
50,884 - MPMX19_00048 0.25 +0.0
50,884 - MPMX19_00048 0.25 -0.5
50,884 - MPMX19_00048 0.25 -0.1
50,884 - MPMX19_00048 0.25 -1.2
50,884 - MPMX19_00048 0.25 -1.5
50,884 - MPMX19_00048 0.25 -2.1
50,884 - MPMX19_00048 0.25 +0.3
50,884 - MPMX19_00048 0.25 -2.5
50,884 - MPMX19_00048 0.25 -0.0
50,884 - MPMX19_00048 0.25 -1.0
51,339 + MPMX19_00048 0.72 -0.9
51,340 - MPMX19_00048 0.73 +1.7
51,340 - MPMX19_00048 0.73 -0.0
51,546 + -1.4
51,546 + +0.1
51,546 + -0.9
51,546 + +0.1
51,546 + +0.6
51,546 + -0.4
51,546 + +1.3
51,546 + -1.0
51,546 + -0.4
51,546 + -1.0
51,546 + -0.5
51,546 + +0.2
51,546 + -0.4
51,546 + -0.2
51,546 + -0.9
51,546 + +0.3
51,546 + -0.0
51,547 - +0.2
51,547 - -0.6
51,547 - -1.1
51,547 - -0.9
51,547 - +0.7
51,547 - +0.3
51,547 - +0.2
51,547 - -1.1
51,547 - -0.9
51,547 - +0.3
51,547 - +0.2
51,547 - -1.1
51,547 - -0.9
51,902 + MPMX19_00049 0.53 -0.3
51,902 + MPMX19_00049 0.53 +0.1
51,902 + MPMX19_00049 0.53 +0.5
51,902 + MPMX19_00049 0.53 -0.4
51,903 - MPMX19_00049 0.53 +0.4
51,903 - MPMX19_00049 0.53 -2.1
51,903 - MPMX19_00049 0.53 -0.6
51,968 + MPMX19_00049 0.65 +0.1
51,968 + MPMX19_00049 0.65 +1.1
51,968 + MPMX19_00049 0.65 +1.1
51,968 + MPMX19_00049 0.65 -1.4
51,969 - MPMX19_00049 0.65 -0.3
51,969 - MPMX19_00049 0.65 -0.2
51,969 - MPMX19_00049 0.65 -0.4
51,969 - MPMX19_00049 0.65 +2.3
51,969 - MPMX19_00049 0.65 -1.0
51,969 - MPMX19_00049 0.65 +0.0
51,969 - MPMX19_00049 0.65 -1.1
52,194 + -1.4
52,194 + -0.1
52,194 + +1.9
52,194 + -1.3
52,194 + -2.0
52,194 + +0.7
52,195 - +0.7
52,195 - +1.5
52,195 - -0.4
52,195 - -0.9
52,275 + MPMX19_00050 0.12 -1.3

Or see this region's nucleotide sequence