Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00026 and MPMX19_00027 are separated by 10 nucleotides MPMX19_00027 and MPMX19_00028 are separated by 274 nucleotides MPMX19_00028 and MPMX19_00029 are separated by 62 nucleotides
MPMX19_00026: MPMX19_00026 - hypothetical protein, at 31,368 to 32,336
_00026
MPMX19_00027: MPMX19_00027 - hypothetical protein, at 32,347 to 33,561
_00027
MPMX19_00028: MPMX19_00028 - hypothetical protein, at 33,836 to 34,153
_00028
MPMX19_00029: MPMX19_00029 - Phosphoglycolate phosphatase, at 34,216 to 35,094
_00029
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.645 kb on + strand, within MPMX19_00026 at 31.646 kb on - strand, within MPMX19_00026 at 31.646 kb on - strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 32.517 kb on - strand, within MPMX19_00027 at 32.517 kb on - strand, within MPMX19_00027 at 32.517 kb on - strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.221 kb on + strand, within MPMX19_00027 at 33.221 kb on + strand, within MPMX19_00027 at 33.221 kb on + strand, within MPMX19_00027 at 33.221 kb on + strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.358 kb on - strand, within MPMX19_00027 at 33.358 kb on - strand, within MPMX19_00027 at 33.358 kb on - strand, within MPMX19_00027 at 33.358 kb on - strand, within MPMX19_00027 at 33.614 kb on + strand at 33.614 kb on + strand at 33.614 kb on + strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.616 kb on + strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.760 kb on + strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.781 kb on - strand at 33.781 kb on - strand at 33.781 kb on - strand at 33.781 kb on - strand at 33.781 kb on - strand at 33.856 kb on + strand at 33.856 kb on + strand at 33.856 kb on + strand at 33.856 kb on + strand at 33.857 kb on - strand at 33.857 kb on - strand at 33.857 kb on - strand at 33.857 kb on - strand at 33.915 kb on + strand, within MPMX19_00028 at 33.915 kb on + strand, within MPMX19_00028 at 33.916 kb on - strand, within MPMX19_00028 at 33.916 kb on - strand, within MPMX19_00028 at 33.929 kb on + strand, within MPMX19_00028 at 33.929 kb on + strand, within MPMX19_00028 at 33.929 kb on + strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.061 kb on + strand, within MPMX19_00028 at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.166 kb on + strand at 34.167 kb on - strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 31,405 + +0.0 31,405 + -1.3 31,405 + -0.4 31,405 + +1.1 31,405 + -1.5 31,406 - +0.2 31,406 - +0.6 31,406 - -0.4 31,406 - -2.5 31,406 - -0.9 31,406 - +0.2 31,438 + -1.7 31,438 + -1.4 31,438 + -1.8 31,438 + +0.3 31,439 - -0.4 31,439 - +0.9 31,439 - -0.0 31,439 - -0.1 31,439 - -0.1 31,439 - +1.0 31,439 - -0.3 31,439 - +0.6 31,439 - +0.1 31,439 - -1.1 31,439 - -0.1 31,645 + MPMX19_00026 0.29 -1.3 31,646 - MPMX19_00026 0.29 -0.2 31,646 - MPMX19_00026 0.29 +0.0 31,714 + MPMX19_00026 0.36 -1.1 31,714 + MPMX19_00026 0.36 -1.1 31,714 + MPMX19_00026 0.36 -1.6 31,714 + MPMX19_00026 0.36 +1.1 31,714 + MPMX19_00026 0.36 -0.5 31,714 + MPMX19_00026 0.36 -1.9 31,714 + MPMX19_00026 0.36 -1.8 31,715 - MPMX19_00026 0.36 -0.1 31,715 - MPMX19_00026 0.36 +0.1 31,715 - MPMX19_00026 0.36 +0.6 31,715 - MPMX19_00026 0.36 -0.6 31,715 - MPMX19_00026 0.36 -1.4 31,715 - MPMX19_00026 0.36 +0.1 31,715 - MPMX19_00026 0.36 -0.3 31,729 + MPMX19_00026 0.37 +0.1 31,729 + MPMX19_00026 0.37 -0.3 31,729 + MPMX19_00026 0.37 -0.3 31,729 + MPMX19_00026 0.37 +1.7 31,729 + MPMX19_00026 0.37 -0.7 31,729 + MPMX19_00026 0.37 -0.1 31,729 + MPMX19_00026 0.37 -0.1 31,729 + MPMX19_00026 0.37 -0.4 31,730 - MPMX19_00026 0.37 +0.7 31,730 - MPMX19_00026 0.37 +0.1 31,730 - MPMX19_00026 0.37 -0.2 31,730 - MPMX19_00026 0.37 -1.7 31,730 - MPMX19_00026 0.37 +0.1 31,730 - MPMX19_00026 0.37 -0.4 31,730 - MPMX19_00026 0.37 +1.0 31,730 - MPMX19_00026 0.37 +0.6 31,858 + MPMX19_00026 0.51 -0.1 31,858 + MPMX19_00026 0.51 -2.1 31,858 + MPMX19_00026 0.51 +0.5 31,858 + MPMX19_00026 0.51 +0.3 31,858 + MPMX19_00026 0.51 +0.8 31,858 + MPMX19_00026 0.51 -0.3 31,858 + MPMX19_00026 0.51 -1.3 31,858 + MPMX19_00026 0.51 -1.8 31,858 + MPMX19_00026 0.51 -0.6 31,858 + MPMX19_00026 0.51 -2.5 31,858 + MPMX19_00026 0.51 -1.2 31,858 + MPMX19_00026 0.51 -0.3 31,859 - MPMX19_00026 0.51 -1.6 31,859 - MPMX19_00026 0.51 -0.9 31,859 - MPMX19_00026 0.51 +0.6 31,859 - MPMX19_00026 0.51 -0.6 31,859 - MPMX19_00026 0.51 -1.4 31,859 - MPMX19_00026 0.51 -0.4 31,859 - MPMX19_00026 0.51 -0.9 31,859 - MPMX19_00026 0.51 +0.1 31,859 - MPMX19_00026 0.51 +0.1 32,517 - MPMX19_00027 0.14 +0.7 32,517 - MPMX19_00027 0.14 -0.1 32,517 - MPMX19_00027 0.14 -2.0 32,639 + MPMX19_00027 0.24 -0.3 32,639 + MPMX19_00027 0.24 -1.0 32,639 + MPMX19_00027 0.24 -1.0 32,639 + MPMX19_00027 0.24 +1.0 32,639 + MPMX19_00027 0.24 +0.5 32,639 + MPMX19_00027 0.24 -0.2 32,639 + MPMX19_00027 0.24 +0.3 32,639 + MPMX19_00027 0.24 -0.1 32,640 - MPMX19_00027 0.24 +0.1 32,640 - MPMX19_00027 0.24 -0.5 32,640 - MPMX19_00027 0.24 -1.2 32,640 - MPMX19_00027 0.24 -0.1 32,640 - MPMX19_00027 0.24 +1.0 33,103 + MPMX19_00027 0.62 -0.9 33,103 + MPMX19_00027 0.62 -1.4 33,103 + MPMX19_00027 0.62 +0.1 33,103 + MPMX19_00027 0.62 +0.5 33,103 + MPMX19_00027 0.62 +1.0 33,103 + MPMX19_00027 0.62 +0.7 33,104 - MPMX19_00027 0.62 +0.7 33,104 - MPMX19_00027 0.62 +0.5 33,104 - MPMX19_00027 0.62 +0.3 33,104 - MPMX19_00027 0.62 -0.1 33,104 - MPMX19_00027 0.62 +0.4 33,221 + MPMX19_00027 0.72 -0.5 33,221 + MPMX19_00027 0.72 +0.4 33,221 + MPMX19_00027 0.72 -0.3 33,221 + MPMX19_00027 0.72 -0.7 33,222 - MPMX19_00027 0.72 -2.4 33,222 - MPMX19_00027 0.72 -0.4 33,222 - MPMX19_00027 0.72 -0.5 33,222 - MPMX19_00027 0.72 -2.0 33,222 - MPMX19_00027 0.72 -0.1 33,222 - MPMX19_00027 0.72 +0.6 33,222 - MPMX19_00027 0.72 -1.1 33,222 - MPMX19_00027 0.72 -0.8 33,358 - MPMX19_00027 0.83 -2.0 33,358 - MPMX19_00027 0.83 -0.2 33,358 - MPMX19_00027 0.83 -0.1 33,358 - MPMX19_00027 0.83 -1.4 33,614 + -0.4 33,614 + -1.3 33,614 + +0.1 33,615 - -1.1 33,615 - +1.5 33,615 - -1.1 33,615 - -1.1 33,615 - -0.6 33,615 - -0.3 33,615 - -1.1 33,615 - +0.9 33,615 - -0.0 33,615 - -0.1 33,615 - +0.2 33,615 - -2.0 33,615 - -0.8 33,615 - -0.2 33,615 - +0.4 33,615 - -0.9 33,616 + -0.3 33,617 - -1.6 33,617 - +0.9 33,617 - -2.4 33,617 - -0.3 33,617 - -1.1 33,617 - -2.4 33,617 - +0.7 33,617 - -0.7 33,760 + -1.6 33,761 - +1.1 33,761 - +1.0 33,761 - +0.3 33,761 - +1.7 33,761 - +0.3 33,761 - -2.2 33,761 - -0.4 33,780 + -1.7 33,780 + -0.4 33,780 + -2.1 33,780 + -0.9 33,780 + +0.4 33,780 + -0.3 33,780 + -0.7 33,780 + -1.0 33,780 + -2.9 33,780 + +0.5 33,781 - -1.5 33,781 - +1.3 33,781 - -2.0 33,781 - -1.0 33,781 - -0.3 33,856 + -0.1 33,856 + -0.1 33,856 + +1.0 33,856 + +0.1 33,857 - +2.2 33,857 - +1.1 33,857 - +0.3 33,857 - -1.3 33,915 + MPMX19_00028 0.25 -0.3 33,915 + MPMX19_00028 0.25 -0.6 33,916 - MPMX19_00028 0.25 +0.9 33,916 - MPMX19_00028 0.25 -0.4 33,929 + MPMX19_00028 0.29 +0.1 33,929 + MPMX19_00028 0.29 -0.4 33,929 + MPMX19_00028 0.29 -1.0 33,930 - MPMX19_00028 0.30 -0.3 33,930 - MPMX19_00028 0.30 +0.4 33,930 - MPMX19_00028 0.30 +0.1 33,930 - MPMX19_00028 0.30 +0.2 33,930 - MPMX19_00028 0.30 +0.3 33,930 - MPMX19_00028 0.30 +1.0 33,930 - MPMX19_00028 0.30 -0.1 33,931 + MPMX19_00028 0.30 +1.7 33,931 + MPMX19_00028 0.30 +0.5 33,931 + MPMX19_00028 0.30 -0.9 33,931 + MPMX19_00028 0.30 +0.2 33,931 + MPMX19_00028 0.30 +0.7 33,931 + MPMX19_00028 0.30 -0.4 33,931 + MPMX19_00028 0.30 -1.7 33,932 - MPMX19_00028 0.30 -0.3 33,932 - MPMX19_00028 0.30 +0.4 33,932 - MPMX19_00028 0.30 +0.7 33,932 - MPMX19_00028 0.30 -0.5 33,932 - MPMX19_00028 0.30 -1.4 34,058 + MPMX19_00028 0.70 -0.0 34,058 + MPMX19_00028 0.70 +0.3 34,058 + MPMX19_00028 0.70 -1.4 34,058 + MPMX19_00028 0.70 -0.6 34,058 + MPMX19_00028 0.70 -0.1 34,058 + MPMX19_00028 0.70 +0.1 34,058 + MPMX19_00028 0.70 -0.3 34,058 + MPMX19_00028 0.70 -0.1 34,058 + MPMX19_00028 0.70 -0.7 34,058 + MPMX19_00028 0.70 -0.1 34,058 + MPMX19_00028 0.70 -1.1 34,059 - MPMX19_00028 0.70 +0.2 34,059 - MPMX19_00028 0.70 +1.0 34,059 - MPMX19_00028 0.70 -1.4 34,059 - MPMX19_00028 0.70 -1.7 34,059 - MPMX19_00028 0.70 -1.4 34,059 - MPMX19_00028 0.70 -1.6 34,059 - MPMX19_00028 0.70 +0.5 34,061 + MPMX19_00028 0.71 -1.6 34,164 + +0.4 34,164 + -0.9 34,164 + +0.2 34,164 + -0.1 34,164 + -1.5 34,165 - +0.4 34,165 - +0.7 34,165 - -1.0 34,165 - -0.2 34,165 - -0.1 34,165 - -0.1 34,165 - -0.7 34,165 - -0.4 34,165 - -0.6 34,166 + -2.0 34,167 - +0.4 34,194 + +0.6 34,194 + +1.5 34,194 + +0.8 34,195 - -0.9 34,195 - +0.1 34,195 - +1.1 34,195 - +1.6 34,195 - -0.3 34,195 - -1.6 34,195 - +0.5
Or see this region's nucleotide sequence