Strain Fitness in Pseudomonas sp. DMC3 around GFF4833

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4831 and GFF4832 are separated by 142 nucleotidesGFF4832 and GFF4833 are separated by 81 nucleotidesGFF4833 and GFF4834 are separated by 425 nucleotides GFF4831 - hypothetical protein, at 95,794 to 96,219 GFF4831 GFF4832 - hypothetical protein, at 96,362 to 97,036 GFF4832 GFF4833 - tRNA-cytidine(32) 2-sulfurtransferase, at 97,118 to 97,942 GFF4833 GFF4834 - Inner membrane protein YohC, at 98,368 to 98,970 GFF4834 Position (kb) 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.154 kb on + strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.155 kb on - strand, within GFF4831at 96.238 kb on + strandat 96.363 kb on + strandat 96.363 kb on + strandat 96.364 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.378 kb on + strandat 96.379 kb on - strandat 96.379 kb on - strandat 96.379 kb on - strandat 96.379 kb on - strandat 96.509 kb on - strand, within GFF4832at 96.528 kb on + strand, within GFF4832at 96.615 kb on + strand, within GFF4832at 96.901 kb on + strand, within GFF4832at 96.913 kb on - strand, within GFF4832at 97.008 kb on + strandat 97.008 kb on + strandat 97.026 kb on + strandat 97.026 kb on + strandat 97.027 kb on - strandat 97.027 kb on - strandat 97.106 kb on + strandat 97.106 kb on + strandat 97.106 kb on + strandat 97.107 kb on - strandat 97.107 kb on - strandat 97.119 kb on + strandat 97.119 kb on + strandat 97.368 kb on + strand, within GFF4833at 97.395 kb on + strand, within GFF4833at 97.396 kb on - strand, within GFF4833at 97.563 kb on + strand, within GFF4833at 97.563 kb on + strand, within GFF4833at 97.563 kb on + strand, within GFF4833at 97.564 kb on - strand, within GFF4833at 97.564 kb on - strand, within GFF4833at 97.564 kb on - strand, within GFF4833at 97.641 kb on + strand, within GFF4833at 97.641 kb on + strand, within GFF4833at 97.665 kb on + strand, within GFF4833at 97.665 kb on + strand, within GFF4833at 97.690 kb on - strand, within GFF4833at 97.806 kb on + strand, within GFF4833at 97.806 kb on + strand, within GFF4833at 97.806 kb on + strand, within GFF4833at 97.806 kb on + strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.807 kb on - strand, within GFF4833at 97.930 kb on + strandat 97.931 kb on - strandat 97.999 kb on - strandat 98.027 kb on + strandat 98.071 kb on + strandat 98.071 kb on + strandat 98.128 kb on + strandat 98.129 kb on - strandat 98.166 kb on + strandat 98.166 kb on + strandat 98.166 kb on + strandat 98.167 kb on - strandat 98.167 kb on - strandat 98.167 kb on - strandat 98.195 kb on - strandat 98.208 kb on - strandat 98.224 kb on + strandat 98.270 kb on + strandat 98.296 kb on + strandat 98.381 kb on + strandat 98.381 kb on + strandat 98.382 kb on - strandat 98.458 kb on + strand, within GFF4834at 98.458 kb on + strand, within GFF4834at 98.458 kb on + strand, within GFF4834at 98.458 kb on + strand, within GFF4834at 98.459 kb on - strand, within GFF4834at 98.459 kb on - strand, within GFF4834at 98.459 kb on - strand, within GFF4834at 98.469 kb on + strand, within GFF4834at 98.469 kb on + strand, within GFF4834at 98.469 kb on + strand, within GFF4834at 98.469 kb on + strand, within GFF4834at 98.470 kb on - strand, within GFF4834at 98.470 kb on - strand, within GFF4834at 98.470 kb on - strand, within GFF4834at 98.662 kb on + strand, within GFF4834at 98.662 kb on + strand, within GFF4834at 98.662 kb on + strand, within GFF4834at 98.662 kb on + strand, within GFF4834at 98.662 kb on + strand, within GFF4834at 98.663 kb on - strand, within GFF4834at 98.663 kb on - strand, within GFF4834at 98.663 kb on - strand, within GFF4834at 98.663 kb on - strand, within GFF4834at 98.663 kb on - strand, within GFF4834at 98.663 kb on - strand, within GFF4834at 98.663 kb on - strand, within GFF4834at 98.707 kb on + strand, within GFF4834at 98.707 kb on + strand, within GFF4834at 98.757 kb on + strand, within GFF4834at 98.757 kb on + strand, within GFF4834at 98.757 kb on + strand, within GFF4834at 98.757 kb on + strand, within GFF4834at 98.757 kb on + strand, within GFF4834at 98.757 kb on + strand, within GFF4834at 98.757 kb on + strand, within GFF4834at 98.758 kb on - strand, within GFF4834at 98.758 kb on - strand, within GFF4834at 98.758 kb on - strand, within GFF4834at 98.797 kb on + strand, within GFF4834at 98.797 kb on + strand, within GFF4834at 98.798 kb on - strand, within GFF4834at 98.798 kb on - strand, within GFF4834at 98.800 kb on - strand, within GFF4834at 98.800 kb on - strand, within GFF4834at 98.806 kb on + strand, within GFF4834at 98.806 kb on + strand, within GFF4834at 98.806 kb on + strand, within GFF4834at 98.806 kb on + strand, within GFF4834at 98.806 kb on + strand, within GFF4834at 98.806 kb on + strand, within GFF4834at 98.807 kb on - strand, within GFF4834at 98.807 kb on - strand, within GFF4834at 98.807 kb on - strand, within GFF4834at 98.807 kb on - strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.815 kb on + strand, within GFF4834at 98.816 kb on - strand, within GFF4834at 98.816 kb on - strand, within GFF4834at 98.816 kb on - strand, within GFF4834at 98.816 kb on - strand, within GFF4834

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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96,154 + GFF4831 0.85 +1.4
96,154 + GFF4831 0.85 +0.6
96,154 + GFF4831 0.85 -0.4
96,154 + GFF4831 0.85 +0.7
96,154 + GFF4831 0.85 +0.6
96,154 + GFF4831 0.85 -0.4
96,154 + GFF4831 0.85 +1.8
96,155 - GFF4831 0.85 -2.0
96,155 - GFF4831 0.85 -0.3
96,155 - GFF4831 0.85 -0.4
96,155 - GFF4831 0.85 -0.0
96,155 - GFF4831 0.85 +0.6
96,155 - GFF4831 0.85 -0.1
96,155 - GFF4831 0.85 -1.3
96,155 - GFF4831 0.85 -1.0
96,155 - GFF4831 0.85 +1.6
96,155 - GFF4831 0.85 -0.9
96,155 - GFF4831 0.85 -0.3
96,155 - GFF4831 0.85 -0.1
96,155 - GFF4831 0.85 -1.2
96,238 + -1.4
96,363 + -1.5
96,363 + -0.2
96,364 - +0.7
96,377 - +0.1
96,377 - -0.3
96,377 - +0.6
96,378 + +0.5
96,379 - -2.0
96,379 - +0.8
96,379 - +0.2
96,379 - -0.0
96,509 - GFF4832 0.22 +0.4
96,528 + GFF4832 0.25 +0.8
96,615 + GFF4832 0.37 -0.2
96,901 + GFF4832 0.80 -0.3
96,913 - GFF4832 0.82 -1.5
97,008 + +0.3
97,008 + -0.9
97,026 + -1.0
97,026 + -0.3
97,027 - +1.2
97,027 - -0.3
97,106 + -0.7
97,106 + -0.9
97,106 + +0.2
97,107 - -0.5
97,107 - +0.6
97,119 + +0.6
97,119 + +0.2
97,368 + GFF4833 0.30 +0.0
97,395 + GFF4833 0.34 +0.1
97,396 - GFF4833 0.34 -0.2
97,563 + GFF4833 0.54 +0.5
97,563 + GFF4833 0.54 +0.6
97,563 + GFF4833 0.54 -0.2
97,564 - GFF4833 0.54 -0.0
97,564 - GFF4833 0.54 +0.6
97,564 - GFF4833 0.54 +1.2
97,641 + GFF4833 0.63 +0.0
97,641 + GFF4833 0.63 +1.0
97,665 + GFF4833 0.66 -0.4
97,665 + GFF4833 0.66 -1.0
97,690 - GFF4833 0.69 +0.2
97,806 + GFF4833 0.83 -0.9
97,806 + GFF4833 0.83 +1.4
97,806 + GFF4833 0.83 +0.5
97,806 + GFF4833 0.83 +0.2
97,807 - GFF4833 0.84 +0.8
97,807 - GFF4833 0.84 +0.0
97,807 - GFF4833 0.84 -0.8
97,807 - GFF4833 0.84 +0.2
97,807 - GFF4833 0.84 +0.1
97,807 - GFF4833 0.84 +0.7
97,807 - GFF4833 0.84 -0.8
97,930 + -1.2
97,931 - +0.9
97,999 - -0.3
98,027 + +0.8
98,071 + +0.2
98,071 + -0.7
98,128 + -1.0
98,129 - -0.5
98,166 + +0.6
98,166 + +1.0
98,166 + -0.2
98,167 - +0.0
98,167 - -1.0
98,167 - +1.2
98,195 - -0.6
98,208 - +0.5
98,224 + -0.3
98,270 + +0.4
98,296 + -0.7
98,381 + -0.3
98,381 + -0.7
98,382 - +1.1
98,458 + GFF4834 0.15 -0.2
98,458 + GFF4834 0.15 +0.1
98,458 + GFF4834 0.15 -0.6
98,458 + GFF4834 0.15 +0.0
98,459 - GFF4834 0.15 -1.0
98,459 - GFF4834 0.15 -1.3
98,459 - GFF4834 0.15 +0.2
98,469 + GFF4834 0.17 +0.9
98,469 + GFF4834 0.17 -0.2
98,469 + GFF4834 0.17 +0.7
98,469 + GFF4834 0.17 -0.1
98,470 - GFF4834 0.17 +0.1
98,470 - GFF4834 0.17 -0.4
98,470 - GFF4834 0.17 +0.6
98,662 + GFF4834 0.49 -0.2
98,662 + GFF4834 0.49 -0.5
98,662 + GFF4834 0.49 -0.9
98,662 + GFF4834 0.49 +0.4
98,662 + GFF4834 0.49 -0.5
98,663 - GFF4834 0.49 +0.5
98,663 - GFF4834 0.49 -1.7
98,663 - GFF4834 0.49 -1.3
98,663 - GFF4834 0.49 -0.4
98,663 - GFF4834 0.49 -0.3
98,663 - GFF4834 0.49 -0.0
98,663 - GFF4834 0.49 -0.2
98,707 + GFF4834 0.56 +0.6
98,707 + GFF4834 0.56 +0.3
98,757 + GFF4834 0.65 +0.5
98,757 + GFF4834 0.65 -0.6
98,757 + GFF4834 0.65 -0.2
98,757 + GFF4834 0.65 -0.0
98,757 + GFF4834 0.65 +0.0
98,757 + GFF4834 0.65 -0.6
98,757 + GFF4834 0.65 -0.1
98,758 - GFF4834 0.65 -0.3
98,758 - GFF4834 0.65 -0.3
98,758 - GFF4834 0.65 +0.3
98,797 + GFF4834 0.71 -0.5
98,797 + GFF4834 0.71 +0.2
98,798 - GFF4834 0.71 +1.7
98,798 - GFF4834 0.71 -0.6
98,800 - GFF4834 0.72 -0.0
98,800 - GFF4834 0.72 +1.1
98,806 + GFF4834 0.73 +0.4
98,806 + GFF4834 0.73 +0.1
98,806 + GFF4834 0.73 -0.0
98,806 + GFF4834 0.73 -1.7
98,806 + GFF4834 0.73 +0.1
98,806 + GFF4834 0.73 +0.1
98,807 - GFF4834 0.73 -0.2
98,807 - GFF4834 0.73 -0.9
98,807 - GFF4834 0.73 +1.6
98,807 - GFF4834 0.73 +0.8
98,815 + GFF4834 0.74 -0.4
98,815 + GFF4834 0.74 -1.4
98,815 + GFF4834 0.74 -0.0
98,815 + GFF4834 0.74 +1.3
98,815 + GFF4834 0.74 -0.2
98,815 + GFF4834 0.74 -2.1
98,815 + GFF4834 0.74 +0.8
98,815 + GFF4834 0.74 -0.4
98,815 + GFF4834 0.74 -0.7
98,816 - GFF4834 0.74 -0.2
98,816 - GFF4834 0.74 -0.8
98,816 - GFF4834 0.74 -0.8
98,816 - GFF4834 0.74 +0.6

Or see this region's nucleotide sequence