Strain Fitness in Pseudomonas sp. DMC3 around GFF2225

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2223 and GFF2224 are separated by 220 nucleotidesGFF2224 and GFF2225 are separated by 1 nucleotidesGFF2225 and GFF2226 are separated by 130 nucleotides GFF2223 - hypothetical protein, at 477,122 to 477,418 GFF2223 GFF2224 - hypothetical protein, at 477,639 to 478,229 GFF2224 GFF2225 - Major cardiolipin synthase ClsA, at 478,231 to 479,388 GFF2225 GFF2226 - Beta-xylosidase, at 479,519 to 481,810 GFF2226 Position (kb) 478 479 480Strain fitness (log2 ratio) -2 -1 0 1at 477.234 kb on - strand, within GFF2223at 477.249 kb on - strand, within GFF2223at 477.249 kb on - strand, within GFF2223at 477.284 kb on + strand, within GFF2223at 477.285 kb on - strand, within GFF2223at 477.285 kb on - strand, within GFF2223at 477.585 kb on + strandat 477.585 kb on + strandat 477.585 kb on + strandat 477.657 kb on + strandat 477.658 kb on - strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.659 kb on + strandat 477.660 kb on - strandat 477.660 kb on - strandat 477.660 kb on - strandat 477.660 kb on - strandat 477.660 kb on - strandat 477.660 kb on - strandat 477.717 kb on + strand, within GFF2224at 477.718 kb on - strand, within GFF2224at 478.039 kb on - strand, within GFF2224at 478.357 kb on + strand, within GFF2225at 478.357 kb on + strand, within GFF2225at 478.357 kb on + strand, within GFF2225at 478.358 kb on - strand, within GFF2225at 478.358 kb on - strand, within GFF2225at 478.358 kb on - strand, within GFF2225at 478.362 kb on - strand, within GFF2225at 478.362 kb on - strand, within GFF2225at 478.362 kb on - strand, within GFF2225at 478.454 kb on - strand, within GFF2225at 478.523 kb on - strand, within GFF2225at 478.523 kb on - strand, within GFF2225at 478.561 kb on + strand, within GFF2225at 478.575 kb on + strand, within GFF2225at 479.056 kb on + strand, within GFF2225at 479.056 kb on + strand, within GFF2225at 479.057 kb on - strand, within GFF2225at 479.057 kb on - strand, within GFF2225at 479.059 kb on + strand, within GFF2225at 479.098 kb on + strand, within GFF2225at 479.099 kb on - strand, within GFF2225at 479.147 kb on + strand, within GFF2225at 479.148 kb on - strand, within GFF2225at 479.521 kb on - strandat 479.573 kb on + strandat 479.601 kb on + strandat 479.602 kb on - strandat 479.620 kb on - strandat 479.748 kb on + strandat 479.748 kb on + strandat 479.852 kb on - strand, within GFF2226at 479.874 kb on + strand, within GFF2226at 479.874 kb on + strand, within GFF2226at 479.875 kb on - strand, within GFF2226at 479.886 kb on + strand, within GFF2226at 479.925 kb on + strand, within GFF2226at 479.937 kb on + strand, within GFF2226at 479.937 kb on + strand, within GFF2226at 479.937 kb on + strand, within GFF2226at 479.937 kb on + strand, within GFF2226at 479.938 kb on - strand, within GFF2226at 479.938 kb on - strand, within GFF2226at 479.938 kb on - strand, within GFF2226at 479.938 kb on - strand, within GFF2226at 479.938 kb on - strand, within GFF2226at 479.938 kb on - strand, within GFF2226at 479.988 kb on + strand, within GFF2226at 479.988 kb on + strand, within GFF2226at 479.988 kb on + strand, within GFF2226at 479.988 kb on + strand, within GFF2226at 479.988 kb on + strand, within GFF2226at 479.989 kb on - strand, within GFF2226at 479.989 kb on - strand, within GFF2226at 479.989 kb on - strand, within GFF2226at 479.989 kb on - strand, within GFF2226at 479.989 kb on - strand, within GFF2226at 479.989 kb on - strand, within GFF2226at 479.991 kb on + strand, within GFF2226at 479.992 kb on - strand, within GFF2226at 479.992 kb on - strand, within GFF2226at 479.992 kb on - strand, within GFF2226at 479.992 kb on - strand, within GFF2226at 479.992 kb on - strand, within GFF2226at 480.051 kb on + strand, within GFF2226at 480.052 kb on - strand, within GFF2226at 480.202 kb on + strand, within GFF2226at 480.202 kb on + strand, within GFF2226

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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477,234 - GFF2223 0.38 -1.7
477,249 - GFF2223 0.43 -0.2
477,249 - GFF2223 0.43 -0.3
477,284 + GFF2223 0.55 -0.6
477,285 - GFF2223 0.55 -0.4
477,285 - GFF2223 0.55 -0.7
477,585 + -0.6
477,585 + +1.0
477,585 + -1.1
477,657 + -1.3
477,658 - +0.3
477,659 + +0.8
477,659 + -1.1
477,659 + -0.2
477,659 + -0.1
477,659 + -0.8
477,659 + +0.3
477,659 + -0.8
477,659 + -1.6
477,659 + -0.0
477,659 + -0.5
477,659 + +1.2
477,659 + +1.2
477,660 - +0.3
477,660 - -0.6
477,660 - -0.5
477,660 - -0.1
477,660 - -0.3
477,660 - +0.3
477,717 + GFF2224 0.13 -0.3
477,718 - GFF2224 0.13 -0.7
478,039 - GFF2224 0.68 +0.5
478,357 + GFF2225 0.11 +0.2
478,357 + GFF2225 0.11 +0.5
478,357 + GFF2225 0.11 +0.4
478,358 - GFF2225 0.11 +0.5
478,358 - GFF2225 0.11 +0.3
478,358 - GFF2225 0.11 +0.2
478,362 - GFF2225 0.11 +0.3
478,362 - GFF2225 0.11 -1.0
478,362 - GFF2225 0.11 +0.1
478,454 - GFF2225 0.19 -0.1
478,523 - GFF2225 0.25 -1.0
478,523 - GFF2225 0.25 -0.1
478,561 + GFF2225 0.28 -0.7
478,575 + GFF2225 0.30 -1.5
479,056 + GFF2225 0.71 -0.7
479,056 + GFF2225 0.71 -0.7
479,057 - GFF2225 0.71 -1.7
479,057 - GFF2225 0.71 +0.3
479,059 + GFF2225 0.72 -0.8
479,098 + GFF2225 0.75 -2.1
479,099 - GFF2225 0.75 -0.1
479,147 + GFF2225 0.79 +1.7
479,148 - GFF2225 0.79 -0.0
479,521 - +1.1
479,573 + +0.2
479,601 + +0.2
479,602 - +0.7
479,620 - -0.5
479,748 + -0.3
479,748 + -0.3
479,852 - GFF2226 0.15 -0.2
479,874 + GFF2226 0.15 -0.3
479,874 + GFF2226 0.15 +0.1
479,875 - GFF2226 0.16 +0.8
479,886 + GFF2226 0.16 +1.2
479,925 + GFF2226 0.18 -1.2
479,937 + GFF2226 0.18 -1.0
479,937 + GFF2226 0.18 -0.6
479,937 + GFF2226 0.18 -0.5
479,937 + GFF2226 0.18 +0.3
479,938 - GFF2226 0.18 -0.7
479,938 - GFF2226 0.18 +0.5
479,938 - GFF2226 0.18 -0.8
479,938 - GFF2226 0.18 +0.0
479,938 - GFF2226 0.18 +1.5
479,938 - GFF2226 0.18 -0.4
479,988 + GFF2226 0.20 +0.0
479,988 + GFF2226 0.20 -2.6
479,988 + GFF2226 0.20 -0.1
479,988 + GFF2226 0.20 +0.7
479,988 + GFF2226 0.20 -0.2
479,989 - GFF2226 0.21 +0.4
479,989 - GFF2226 0.21 +0.4
479,989 - GFF2226 0.21 -0.0
479,989 - GFF2226 0.21 +0.7
479,989 - GFF2226 0.21 -0.9
479,989 - GFF2226 0.21 -0.1
479,991 + GFF2226 0.21 +0.2
479,992 - GFF2226 0.21 -1.0
479,992 - GFF2226 0.21 +0.4
479,992 - GFF2226 0.21 -0.7
479,992 - GFF2226 0.21 -0.9
479,992 - GFF2226 0.21 -2.1
480,051 + GFF2226 0.23 +0.4
480,052 - GFF2226 0.23 +0.4
480,202 + GFF2226 0.30 -0.1
480,202 + GFF2226 0.30 -0.3

Or see this region's nucleotide sequence