Strain Fitness in Pseudomonas sp. DMC3 around GFF1775

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1774 and GFF1775 are separated by 139 nucleotidesGFF1775 and GFF1776 are separated by 9 nucleotides GFF1774 - hypothetical protein, at 572,820 to 573,410 GFF1774 GFF1775 - hypothetical protein, at 573,550 to 576,060 GFF1775 GFF1776 - hypothetical protein, at 576,070 to 576,696 GFF1776 Position (kb) 573 574 575 576 577Strain fitness (log2 ratio) -2 -1 0 1 2at 572.593 kb on + strandat 572.593 kb on + strandat 572.594 kb on - strandat 572.666 kb on + strandat 572.723 kb on + strandat 572.723 kb on + strandat 572.769 kb on + strandat 572.775 kb on + strandat 573.123 kb on + strand, within GFF1774at 573.547 kb on + strandat 573.547 kb on + strandat 573.547 kb on + strandat 573.671 kb on + strandat 573.671 kb on + strandat 574.299 kb on + strand, within GFF1775at 574.299 kb on + strand, within GFF1775at 574.303 kb on + strand, within GFF1775at 574.303 kb on + strand, within GFF1775at 574.423 kb on + strand, within GFF1775at 574.423 kb on + strand, within GFF1775at 574.423 kb on + strand, within GFF1775at 574.423 kb on + strand, within GFF1775at 574.423 kb on + strand, within GFF1775at 574.423 kb on + strand, within GFF1775at 574.423 kb on + strand, within GFF1775at 574.424 kb on - strand, within GFF1775at 574.424 kb on - strand, within GFF1775at 574.424 kb on - strand, within GFF1775at 574.424 kb on - strand, within GFF1775at 574.424 kb on - strand, within GFF1775at 574.424 kb on - strand, within GFF1775at 574.424 kb on - strand, within GFF1775at 574.424 kb on - strand, within GFF1775at 574.433 kb on + strand, within GFF1775at 574.433 kb on + strand, within GFF1775at 574.433 kb on + strand, within GFF1775at 574.433 kb on + strand, within GFF1775at 574.434 kb on - strand, within GFF1775at 574.434 kb on - strand, within GFF1775at 574.434 kb on - strand, within GFF1775at 574.434 kb on - strand, within GFF1775at 574.434 kb on - strand, within GFF1775at 574.434 kb on - strand, within GFF1775at 574.434 kb on - strand, within GFF1775at 574.434 kb on - strand, within GFF1775at 574.499 kb on + strand, within GFF1775at 574.500 kb on - strand, within GFF1775at 574.511 kb on + strand, within GFF1775at 574.511 kb on + strand, within GFF1775at 574.511 kb on + strand, within GFF1775at 574.511 kb on + strand, within GFF1775at 574.512 kb on - strand, within GFF1775at 574.512 kb on - strand, within GFF1775at 574.512 kb on - strand, within GFF1775at 574.537 kb on + strand, within GFF1775at 574.537 kb on + strand, within GFF1775at 574.537 kb on + strand, within GFF1775at 574.537 kb on + strand, within GFF1775at 574.542 kb on + strand, within GFF1775at 574.542 kb on + strand, within GFF1775at 574.543 kb on - strand, within GFF1775at 574.543 kb on - strand, within GFF1775at 574.554 kb on - strand, within GFF1775at 574.554 kb on - strand, within GFF1775at 574.576 kb on + strand, within GFF1775at 574.577 kb on - strand, within GFF1775at 574.767 kb on + strand, within GFF1775at 574.768 kb on - strand, within GFF1775at 574.812 kb on + strand, within GFF1775at 574.813 kb on - strand, within GFF1775at 574.945 kb on - strand, within GFF1775at 575.003 kb on + strand, within GFF1775at 575.003 kb on + strand, within GFF1775at 575.003 kb on + strand, within GFF1775at 575.003 kb on + strand, within GFF1775at 575.003 kb on + strand, within GFF1775at 575.003 kb on + strand, within GFF1775at 575.004 kb on - strand, within GFF1775at 575.037 kb on + strand, within GFF1775at 575.038 kb on - strand, within GFF1775at 575.058 kb on + strand, within GFF1775at 575.073 kb on + strand, within GFF1775at 575.073 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.077 kb on - strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.091 kb on + strand, within GFF1775at 575.091 kb on + strand, within GFF1775at 575.091 kb on + strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.264 kb on + strand, within GFF1775at 575.319 kb on + strand, within GFF1775at 575.320 kb on - strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.339 kb on + strand, within GFF1775at 575.339 kb on + strand, within GFF1775at 575.340 kb on - strand, within GFF1775at 575.340 kb on - strand, within GFF1775at 575.340 kb on - strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.562 kb on - strand, within GFF1775at 575.562 kb on - strand, within GFF1775at 575.577 kb on + strand, within GFF1775at 575.577 kb on + strand, within GFF1775at 575.578 kb on - strand, within GFF1775at 575.664 kb on - strand, within GFF1775at 575.676 kb on + strand, within GFF1775at 575.679 kb on - strand, within GFF1775at 575.709 kb on - strand, within GFF1775at 575.738 kb on - strand, within GFF1775at 575.740 kb on - strand, within GFF1775at 575.844 kb on - strandat 576.038 kb on - strandat 576.043 kb on - strandat 576.058 kb on + strandat 576.102 kb on + strandat 576.231 kb on + strand, within GFF1776at 576.232 kb on - strand, within GFF1776at 576.285 kb on + strand, within GFF1776at 576.432 kb on - strand, within GFF1776at 576.496 kb on + strand, within GFF1776at 576.899 kb on - strandat 576.900 kb on + strandat 576.900 kb on + strandat 576.901 kb on - strandat 576.901 kb on - strandat 576.902 kb on + strandat 576.950 kb on - strandat 577.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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572,593 + -1.0
572,593 + -0.1
572,594 - -0.6
572,666 + -1.8
572,723 + +0.2
572,723 + -1.1
572,769 + -0.6
572,775 + +0.1
573,123 + GFF1774 0.51 +0.2
573,547 + +0.6
573,547 + +0.9
573,547 + -0.7
573,671 + -0.1
573,671 + +0.9
574,299 + GFF1775 0.30 -0.0
574,299 + GFF1775 0.30 +0.1
574,303 + GFF1775 0.30 -2.0
574,303 + GFF1775 0.30 -0.3
574,423 + GFF1775 0.35 +0.3
574,423 + GFF1775 0.35 +0.4
574,423 + GFF1775 0.35 +0.7
574,423 + GFF1775 0.35 +0.7
574,423 + GFF1775 0.35 +0.3
574,423 + GFF1775 0.35 +0.9
574,423 + GFF1775 0.35 +0.7
574,424 - GFF1775 0.35 +0.3
574,424 - GFF1775 0.35 +0.7
574,424 - GFF1775 0.35 -0.3
574,424 - GFF1775 0.35 +0.4
574,424 - GFF1775 0.35 +0.2
574,424 - GFF1775 0.35 -1.1
574,424 - GFF1775 0.35 -1.1
574,424 - GFF1775 0.35 +1.1
574,433 + GFF1775 0.35 -0.4
574,433 + GFF1775 0.35 +0.2
574,433 + GFF1775 0.35 -0.1
574,433 + GFF1775 0.35 +0.4
574,434 - GFF1775 0.35 +0.4
574,434 - GFF1775 0.35 +0.6
574,434 - GFF1775 0.35 +0.4
574,434 - GFF1775 0.35 -0.1
574,434 - GFF1775 0.35 +0.2
574,434 - GFF1775 0.35 -0.4
574,434 - GFF1775 0.35 +0.4
574,434 - GFF1775 0.35 -0.1
574,499 + GFF1775 0.38 -2.0
574,500 - GFF1775 0.38 -1.9
574,511 + GFF1775 0.38 +0.1
574,511 + GFF1775 0.38 -0.2
574,511 + GFF1775 0.38 +0.9
574,511 + GFF1775 0.38 +0.9
574,512 - GFF1775 0.38 -0.1
574,512 - GFF1775 0.38 -0.7
574,512 - GFF1775 0.38 +0.8
574,537 + GFF1775 0.39 +0.4
574,537 + GFF1775 0.39 +0.1
574,537 + GFF1775 0.39 -0.3
574,537 + GFF1775 0.39 +0.4
574,542 + GFF1775 0.40 -0.2
574,542 + GFF1775 0.40 +0.2
574,543 - GFF1775 0.40 -1.1
574,543 - GFF1775 0.40 -0.0
574,554 - GFF1775 0.40 +1.7
574,554 - GFF1775 0.40 +0.4
574,576 + GFF1775 0.41 -0.9
574,577 - GFF1775 0.41 -0.1
574,767 + GFF1775 0.48 -0.8
574,768 - GFF1775 0.49 +0.8
574,812 + GFF1775 0.50 -0.1
574,813 - GFF1775 0.50 -0.4
574,945 - GFF1775 0.56 +0.9
575,003 + GFF1775 0.58 +0.4
575,003 + GFF1775 0.58 +2.2
575,003 + GFF1775 0.58 -0.4
575,003 + GFF1775 0.58 +0.0
575,003 + GFF1775 0.58 -1.1
575,003 + GFF1775 0.58 +1.4
575,004 - GFF1775 0.58 -0.0
575,037 + GFF1775 0.59 -0.3
575,038 - GFF1775 0.59 +0.4
575,058 + GFF1775 0.60 -0.5
575,073 + GFF1775 0.61 +0.1
575,073 + GFF1775 0.61 +1.2
575,076 + GFF1775 0.61 -0.0
575,076 + GFF1775 0.61 -0.5
575,076 + GFF1775 0.61 -0.1
575,076 + GFF1775 0.61 +1.1
575,076 + GFF1775 0.61 +0.3
575,076 + GFF1775 0.61 +0.0
575,077 - GFF1775 0.61 +1.4
575,080 + GFF1775 0.61 +0.1
575,080 + GFF1775 0.61 -1.1
575,080 + GFF1775 0.61 -0.4
575,080 + GFF1775 0.61 -0.1
575,080 + GFF1775 0.61 +0.4
575,081 - GFF1775 0.61 -0.9
575,081 - GFF1775 0.61 -1.8
575,081 - GFF1775 0.61 +0.8
575,081 - GFF1775 0.61 +0.2
575,081 - GFF1775 0.61 +1.9
575,081 - GFF1775 0.61 -2.0
575,081 - GFF1775 0.61 +0.1
575,081 - GFF1775 0.61 +0.3
575,086 + GFF1775 0.61 +1.1
575,086 + GFF1775 0.61 +0.0
575,086 + GFF1775 0.61 +1.1
575,086 + GFF1775 0.61 -0.4
575,086 + GFF1775 0.61 -1.0
575,086 + GFF1775 0.61 -0.3
575,086 + GFF1775 0.61 +0.1
575,086 + GFF1775 0.61 +1.3
575,086 + GFF1775 0.61 +0.4
575,086 + GFF1775 0.61 -0.4
575,086 + GFF1775 0.61 +0.7
575,087 - GFF1775 0.61 +0.3
575,087 - GFF1775 0.61 -0.9
575,087 - GFF1775 0.61 -1.1
575,087 - GFF1775 0.61 -1.3
575,087 - GFF1775 0.61 -1.1
575,087 - GFF1775 0.61 -0.5
575,087 - GFF1775 0.61 -0.4
575,087 - GFF1775 0.61 +0.8
575,087 - GFF1775 0.61 -2.1
575,087 - GFF1775 0.61 +0.3
575,087 - GFF1775 0.61 +0.6
575,087 - GFF1775 0.61 +0.9
575,091 + GFF1775 0.61 +0.0
575,091 + GFF1775 0.61 -0.8
575,091 + GFF1775 0.61 -0.3
575,092 - GFF1775 0.61 +0.5
575,092 - GFF1775 0.61 -0.3
575,092 - GFF1775 0.61 +0.2
575,092 - GFF1775 0.61 -0.6
575,092 - GFF1775 0.61 -0.1
575,092 - GFF1775 0.61 +0.1
575,092 - GFF1775 0.61 -0.4
575,092 - GFF1775 0.61 +0.3
575,092 - GFF1775 0.61 -0.8
575,264 + GFF1775 0.68 -0.1
575,319 + GFF1775 0.70 -0.0
575,320 - GFF1775 0.70 -0.1
575,321 + GFF1775 0.71 -1.5
575,321 + GFF1775 0.71 +1.2
575,321 + GFF1775 0.71 +0.8
575,321 + GFF1775 0.71 -0.3
575,321 + GFF1775 0.71 -0.1
575,321 + GFF1775 0.71 -0.1
575,321 + GFF1775 0.71 +0.1
575,321 + GFF1775 0.71 -0.4
575,321 + GFF1775 0.71 -0.4
575,321 + GFF1775 0.71 -0.3
575,321 + GFF1775 0.71 +0.0
575,321 + GFF1775 0.71 -1.0
575,321 + GFF1775 0.71 +0.3
575,321 + GFF1775 0.71 -0.3
575,321 + GFF1775 0.71 +2.0
575,321 + GFF1775 0.71 +2.3
575,322 - GFF1775 0.71 +1.0
575,322 - GFF1775 0.71 -0.9
575,322 - GFF1775 0.71 -0.7
575,322 - GFF1775 0.71 -0.5
575,322 - GFF1775 0.71 +0.7
575,322 - GFF1775 0.71 -1.2
575,322 - GFF1775 0.71 +0.9
575,322 - GFF1775 0.71 +0.1
575,322 - GFF1775 0.71 -0.6
575,322 - GFF1775 0.71 +0.8
575,339 + GFF1775 0.71 +1.4
575,339 + GFF1775 0.71 -0.2
575,340 - GFF1775 0.71 +0.6
575,340 - GFF1775 0.71 +0.1
575,340 - GFF1775 0.71 -0.9
575,399 + GFF1775 0.74 -1.0
575,399 + GFF1775 0.74 +1.0
575,399 + GFF1775 0.74 +0.4
575,399 + GFF1775 0.74 +0.6
575,399 + GFF1775 0.74 -1.3
575,400 - GFF1775 0.74 -1.1
575,400 - GFF1775 0.74 -0.1
575,400 - GFF1775 0.74 -0.3
575,400 - GFF1775 0.74 +0.4
575,400 - GFF1775 0.74 +0.6
575,562 - GFF1775 0.80 +0.2
575,562 - GFF1775 0.80 -0.5
575,577 + GFF1775 0.81 +1.4
575,577 + GFF1775 0.81 -0.6
575,578 - GFF1775 0.81 +0.0
575,664 - GFF1775 0.84 -0.8
575,676 + GFF1775 0.85 -0.7
575,679 - GFF1775 0.85 +2.0
575,709 - GFF1775 0.86 +0.1
575,738 - GFF1775 0.87 +1.2
575,740 - GFF1775 0.87 +0.0
575,844 - +0.0
576,038 - +0.8
576,043 - +0.2
576,058 + -1.4
576,102 + +0.4
576,231 + GFF1776 0.26 +0.6
576,232 - GFF1776 0.26 +0.4
576,285 + GFF1776 0.34 -2.1
576,432 - GFF1776 0.58 +0.2
576,496 + GFF1776 0.68 -0.6
576,899 - -2.6
576,900 + +0.5
576,900 + +0.1
576,901 - +0.1
576,901 - +0.2
576,902 + -2.0
576,950 - -0.0
577,045 - +0.3

Or see this region's nucleotide sequence