Strain Fitness in Sphingobium sp. HT1-2 around GFF963

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF962 and GFF963 are separated by 202 nucleotidesGFF963 and GFF964 are separated by 154 nucleotides GFF962 - 2-polyprenyl-6-methoxyphenol hydroxylase; 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 963,624 to 964,832 GFF962 GFF963 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 965,035 to 966,126 GFF963 GFF964 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 966,281 to 967,306 GFF964 Position (kb) 965 966 967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 964.950 kb on + strandat 964.987 kb on - strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.028 kb on + strandat 965.032 kb on + strandat 965.032 kb on + strandat 965.032 kb on + strandat 965.036 kb on - strandat 965.036 kb on - strandat 965.074 kb on + strandat 965.106 kb on + strandat 965.106 kb on + strandat 965.114 kb on - strandat 965.114 kb on - strandat 965.161 kb on + strand, within GFF963at 965.161 kb on + strand, within GFF963at 965.161 kb on + strand, within GFF963at 965.167 kb on - strand, within GFF963at 965.169 kb on - strand, within GFF963at 965.169 kb on - strand, within GFF963at 965.169 kb on - strand, within GFF963at 965.169 kb on - strand, within GFF963at 965.185 kb on + strand, within GFF963at 965.206 kb on + strand, within GFF963at 965.213 kb on + strand, within GFF963at 965.221 kb on - strand, within GFF963at 965.243 kb on + strand, within GFF963at 965.248 kb on + strand, within GFF963at 965.253 kb on + strand, within GFF963at 965.261 kb on + strand, within GFF963at 965.261 kb on - strand, within GFF963at 965.261 kb on - strand, within GFF963at 965.263 kb on + strand, within GFF963at 965.263 kb on + strand, within GFF963at 965.269 kb on - strand, within GFF963at 965.271 kb on - strand, within GFF963at 965.271 kb on - strand, within GFF963at 965.296 kb on - strand, within GFF963at 965.296 kb on - strand, within GFF963at 965.305 kb on + strand, within GFF963at 965.322 kb on + strand, within GFF963at 965.337 kb on + strand, within GFF963at 965.337 kb on + strand, within GFF963at 965.337 kb on + strand, within GFF963at 965.337 kb on + strand, within GFF963at 965.337 kb on + strand, within GFF963at 965.342 kb on + strand, within GFF963at 965.345 kb on - strand, within GFF963at 965.402 kb on - strand, within GFF963at 965.443 kb on - strand, within GFF963at 965.454 kb on + strand, within GFF963at 965.462 kb on - strand, within GFF963at 965.473 kb on - strand, within GFF963at 965.551 kb on + strand, within GFF963at 965.551 kb on + strand, within GFF963at 965.551 kb on + strand, within GFF963at 965.559 kb on - strand, within GFF963at 965.559 kb on - strand, within GFF963at 965.583 kb on - strand, within GFF963at 965.584 kb on - strand, within GFF963at 965.668 kb on + strand, within GFF963at 965.685 kb on + strand, within GFF963at 965.693 kb on + strand, within GFF963at 965.697 kb on + strand, within GFF963at 965.697 kb on + strand, within GFF963at 965.697 kb on + strand, within GFF963at 965.702 kb on + strand, within GFF963at 965.705 kb on - strand, within GFF963at 965.705 kb on - strand, within GFF963at 965.710 kb on - strand, within GFF963at 965.715 kb on - strand, within GFF963at 965.720 kb on - strand, within GFF963at 965.730 kb on - strand, within GFF963at 965.746 kb on - strand, within GFF963at 965.746 kb on - strand, within GFF963at 965.749 kb on + strand, within GFF963at 965.810 kb on - strand, within GFF963at 965.906 kb on + strand, within GFF963at 965.921 kb on + strand, within GFF963at 965.921 kb on + strand, within GFF963at 965.921 kb on + strand, within GFF963at 965.924 kb on - strand, within GFF963at 965.929 kb on - strand, within GFF963at 965.936 kb on + strand, within GFF963at 965.944 kb on - strand, within GFF963at 965.961 kb on + strand, within GFF963at 965.963 kb on - strand, within GFF963at 965.971 kb on + strand, within GFF963at 965.971 kb on + strand, within GFF963at 965.971 kb on + strand, within GFF963at 965.977 kb on + strand, within GFF963at 965.979 kb on - strand, within GFF963at 965.980 kb on - strand, within GFF963at 965.985 kb on + strand, within GFF963at 965.985 kb on - strand, within GFF963at 965.985 kb on - strand, within GFF963at 965.990 kb on + strand, within GFF963at 965.998 kb on - strand, within GFF963at 965.998 kb on - strand, within GFF963at 966.006 kb on - strand, within GFF963at 966.017 kb on + strandat 966.017 kb on + strandat 966.017 kb on + strandat 966.025 kb on - strandat 966.043 kb on + strandat 966.043 kb on + strandat 966.048 kb on + strandat 966.069 kb on - strandat 966.075 kb on - strandat 966.090 kb on + strandat 966.095 kb on + strandat 966.147 kb on + strandat 966.244 kb on + strandat 966.244 kb on + strandat 966.246 kb on + strandat 966.252 kb on - strandat 966.305 kb on + strandat 966.308 kb on - strandat 966.318 kb on - strandat 966.318 kb on - strandat 966.330 kb on - strandat 966.350 kb on - strandat 966.359 kb on - strandat 966.364 kb on - strandat 966.391 kb on + strand, within GFF964at 966.394 kb on + strand, within GFF964at 966.405 kb on + strand, within GFF964at 966.413 kb on - strand, within GFF964at 966.413 kb on - strand, within GFF964at 966.413 kb on - strand, within GFF964at 966.415 kb on + strand, within GFF964at 966.415 kb on + strand, within GFF964at 966.423 kb on - strand, within GFF964at 966.432 kb on + strand, within GFF964at 966.434 kb on + strand, within GFF964at 966.461 kb on + strand, within GFF964at 966.469 kb on - strand, within GFF964at 966.495 kb on - strand, within GFF964at 966.502 kb on - strand, within GFF964at 966.559 kb on + strand, within GFF964at 966.569 kb on + strand, within GFF964at 966.581 kb on - strand, within GFF964at 966.603 kb on + strand, within GFF964at 966.610 kb on + strand, within GFF964at 966.619 kb on - strand, within GFF964at 966.625 kb on + strand, within GFF964at 966.631 kb on + strand, within GFF964at 966.637 kb on + strand, within GFF964at 966.645 kb on - strand, within GFF964at 966.645 kb on - strand, within GFF964at 966.686 kb on + strand, within GFF964at 966.715 kb on + strand, within GFF964at 966.715 kb on + strand, within GFF964at 966.715 kb on + strand, within GFF964at 966.715 kb on + strand, within GFF964at 966.715 kb on + strand, within GFF964at 966.715 kb on + strand, within GFF964at 966.715 kb on + strand, within GFF964at 966.723 kb on + strand, within GFF964at 966.723 kb on - strand, within GFF964at 966.723 kb on - strand, within GFF964at 966.731 kb on - strand, within GFF964at 966.768 kb on - strand, within GFF964at 966.768 kb on - strand, within GFF964at 966.770 kb on - strand, within GFF964at 966.781 kb on - strand, within GFF964at 966.798 kb on + strand, within GFF964at 966.802 kb on - strand, within GFF964at 966.806 kb on - strand, within GFF964at 966.815 kb on + strand, within GFF964at 966.815 kb on + strand, within GFF964at 966.823 kb on - strand, within GFF964at 966.823 kb on - strand, within GFF964at 966.854 kb on + strand, within GFF964at 966.916 kb on - strand, within GFF964at 966.916 kb on - strand, within GFF964at 966.985 kb on - strand, within GFF964at 967.015 kb on + strand, within GFF964at 967.015 kb on + strand, within GFF964at 967.023 kb on - strand, within GFF964at 967.023 kb on - strand, within GFF964at 967.027 kb on + strand, within GFF964at 967.034 kb on - strand, within GFF964at 967.036 kb on - strand, within GFF964at 967.095 kb on - strand, within GFF964

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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964,950 + +0.9
964,987 - -0.1
965,028 + -1.1
965,028 + -1.3
965,028 + +2.0
965,028 + +0.7
965,028 + +1.2
965,028 + -0.7
965,028 + +1.7
965,028 + -0.4
965,028 + -0.1
965,028 + +0.6
965,032 + +0.6
965,032 + -1.0
965,032 + +0.3
965,036 - -0.3
965,036 - -0.3
965,074 + -2.4
965,106 + -2.2
965,106 + -1.7
965,114 - -1.9
965,114 - -2.1
965,161 + GFF963 0.12 -0.2
965,161 + GFF963 0.12 -0.3
965,161 + GFF963 0.12 -2.5
965,167 - GFF963 0.12 -0.5
965,169 - GFF963 0.12 -1.9
965,169 - GFF963 0.12 -3.6
965,169 - GFF963 0.12 -1.2
965,169 - GFF963 0.12 -2.2
965,185 + GFF963 0.14 -3.6
965,206 + GFF963 0.16 -0.9
965,213 + GFF963 0.16 -1.4
965,221 - GFF963 0.17 -0.3
965,243 + GFF963 0.19 -0.5
965,248 + GFF963 0.20 -0.9
965,253 + GFF963 0.20 -0.8
965,261 + GFF963 0.21 -0.8
965,261 - GFF963 0.21 -0.8
965,261 - GFF963 0.21 -1.9
965,263 + GFF963 0.21 -0.7
965,263 + GFF963 0.21 -3.9
965,269 - GFF963 0.21 +0.5
965,271 - GFF963 0.22 -1.6
965,271 - GFF963 0.22 -2.2
965,296 - GFF963 0.24 -0.3
965,296 - GFF963 0.24 -1.7
965,305 + GFF963 0.25 -2.3
965,322 + GFF963 0.26 -1.1
965,337 + GFF963 0.28 -0.1
965,337 + GFF963 0.28 -2.4
965,337 + GFF963 0.28 -2.8
965,337 + GFF963 0.28 -0.7
965,337 + GFF963 0.28 -0.9
965,342 + GFF963 0.28 -1.7
965,345 - GFF963 0.28 -2.1
965,402 - GFF963 0.34 -2.1
965,443 - GFF963 0.37 -1.9
965,454 + GFF963 0.38 -1.7
965,462 - GFF963 0.39 -1.4
965,473 - GFF963 0.40 -2.2
965,551 + GFF963 0.47 -2.3
965,551 + GFF963 0.47 -2.4
965,551 + GFF963 0.47 -1.6
965,559 - GFF963 0.48 -2.3
965,559 - GFF963 0.48 -0.9
965,583 - GFF963 0.50 -2.0
965,584 - GFF963 0.50 -2.4
965,668 + GFF963 0.58 -1.7
965,685 + GFF963 0.60 -0.5
965,693 + GFF963 0.60 -0.1
965,697 + GFF963 0.61 -1.7
965,697 + GFF963 0.61 -1.5
965,697 + GFF963 0.61 -0.7
965,702 + GFF963 0.61 -1.9
965,705 - GFF963 0.61 -2.1
965,705 - GFF963 0.61 -2.6
965,710 - GFF963 0.62 -1.7
965,715 - GFF963 0.62 -1.3
965,720 - GFF963 0.63 -2.2
965,730 - GFF963 0.64 -0.3
965,746 - GFF963 0.65 -0.3
965,746 - GFF963 0.65 -1.4
965,749 + GFF963 0.65 -1.1
965,810 - GFF963 0.71 -2.5
965,906 + GFF963 0.80 -2.3
965,921 + GFF963 0.81 -2.1
965,921 + GFF963 0.81 -1.2
965,921 + GFF963 0.81 -0.7
965,924 - GFF963 0.81 -2.7
965,929 - GFF963 0.82 -3.8
965,936 + GFF963 0.83 -1.7
965,944 - GFF963 0.83 -1.5
965,961 + GFF963 0.85 -2.1
965,963 - GFF963 0.85 -1.9
965,971 + GFF963 0.86 -1.8
965,971 + GFF963 0.86 -2.2
965,971 + GFF963 0.86 -0.8
965,977 + GFF963 0.86 -2.5
965,979 - GFF963 0.86 -1.6
965,980 - GFF963 0.87 -1.9
965,985 + GFF963 0.87 -2.2
965,985 - GFF963 0.87 +0.5
965,985 - GFF963 0.87 -2.2
965,990 + GFF963 0.87 -3.8
965,998 - GFF963 0.88 -1.7
965,998 - GFF963 0.88 -1.3
966,006 - GFF963 0.89 -2.6
966,017 + -2.4
966,017 + -1.5
966,017 + -1.4
966,025 - -1.2
966,043 + -0.5
966,043 + -0.9
966,048 + -3.5
966,069 - -2.9
966,075 - -2.8
966,090 + -0.3
966,095 + -1.5
966,147 + -0.4
966,244 + -0.4
966,244 + +0.2
966,246 + +0.7
966,252 - -1.6
966,305 + -1.6
966,308 - -0.2
966,318 - +0.1
966,318 - +0.2
966,330 - -0.2
966,350 - +0.2
966,359 - +0.1
966,364 - +1.4
966,391 + GFF964 0.11 +0.2
966,394 + GFF964 0.11 +2.5
966,405 + GFF964 0.12 +1.9
966,413 - GFF964 0.13 -0.7
966,413 - GFF964 0.13 -0.7
966,413 - GFF964 0.13 +2.3
966,415 + GFF964 0.13 -0.3
966,415 + GFF964 0.13 -0.6
966,423 - GFF964 0.14 +0.4
966,432 + GFF964 0.15 -0.1
966,434 + GFF964 0.15 -2.0
966,461 + GFF964 0.18 -1.2
966,469 - GFF964 0.18 -0.5
966,495 - GFF964 0.21 +0.4
966,502 - GFF964 0.22 -0.1
966,559 + GFF964 0.27 -0.6
966,569 + GFF964 0.28 -0.1
966,581 - GFF964 0.29 +0.7
966,603 + GFF964 0.31 +0.4
966,610 + GFF964 0.32 -1.1
966,619 - GFF964 0.33 -2.4
966,625 + GFF964 0.34 +0.5
966,631 + GFF964 0.34 +1.0
966,637 + GFF964 0.35 +0.9
966,645 - GFF964 0.35 +0.0
966,645 - GFF964 0.35 -0.8
966,686 + GFF964 0.39 +0.2
966,715 + GFF964 0.42 +0.8
966,715 + GFF964 0.42 -0.3
966,715 + GFF964 0.42 +1.8
966,715 + GFF964 0.42 +0.5
966,715 + GFF964 0.42 +1.0
966,715 + GFF964 0.42 +0.3
966,715 + GFF964 0.42 +1.1
966,723 + GFF964 0.43 -0.2
966,723 - GFF964 0.43 +0.3
966,723 - GFF964 0.43 -1.8
966,731 - GFF964 0.44 +0.7
966,768 - GFF964 0.47 -0.8
966,768 - GFF964 0.47 +0.1
966,770 - GFF964 0.48 +1.5
966,781 - GFF964 0.49 +0.1
966,798 + GFF964 0.50 +0.3
966,802 - GFF964 0.51 -0.7
966,806 - GFF964 0.51 -1.5
966,815 + GFF964 0.52 -0.1
966,815 + GFF964 0.52 +0.1
966,823 - GFF964 0.53 -0.2
966,823 - GFF964 0.53 -1.4
966,854 + GFF964 0.56 +1.2
966,916 - GFF964 0.62 -1.2
966,916 - GFF964 0.62 +0.1
966,985 - GFF964 0.69 -0.3
967,015 + GFF964 0.72 -0.2
967,015 + GFF964 0.72 -2.1
967,023 - GFF964 0.72 -0.7
967,023 - GFF964 0.72 -0.2
967,027 + GFF964 0.73 +1.1
967,034 - GFF964 0.73 -0.2
967,036 - GFF964 0.74 -0.3
967,095 - GFF964 0.79 +0.1

Or see this region's nucleotide sequence