Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF949 and GFF950 are separated by 21 nucleotides GFF950 and GFF951 are separated by 5 nucleotides GFF951 and GFF952 are separated by 26 nucleotides
GFF949 - hypothetical protein, at 949,607 to 950,734
GFF949
GFF950 - hypothetical protein, at 950,756 to 951,049
GFF950
GFF951 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 951,055 to 951,882
GFF951
GFF952 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 951,909 to 953,174
GFF952
Position (kb) 951
952 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 950.082 kb on + strand, within GFF949 at 950.145 kb on - strand, within GFF949 at 950.148 kb on + strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.286 kb on + strand, within GFF949 at 950.286 kb on + strand, within GFF949 at 950.319 kb on + strand, within GFF949 at 950.319 kb on + strand, within GFF949 at 950.379 kb on - strand, within GFF949 at 950.445 kb on - strand, within GFF949 at 950.450 kb on - strand, within GFF949 at 950.478 kb on - strand, within GFF949 at 950.479 kb on - strand, within GFF949 at 950.487 kb on + strand, within GFF949 at 950.495 kb on - strand, within GFF949 at 950.514 kb on - strand, within GFF949 at 950.529 kb on - strand, within GFF949 at 950.565 kb on + strand, within GFF949 at 950.595 kb on - strand, within GFF949 at 950.609 kb on + strand, within GFF949 at 950.609 kb on - strand, within GFF949 at 950.632 kb on - strand at 950.634 kb on + strand at 950.642 kb on - strand at 950.644 kb on - strand at 950.697 kb on - strand at 950.697 kb on - strand at 950.704 kb on + strand at 950.713 kb on + strand at 950.914 kb on + strand, within GFF950 at 950.914 kb on + strand, within GFF950 at 950.938 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.995 kb on - strand, within GFF950 at 951.007 kb on - strand, within GFF950 at 951.045 kb on + strand at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.329 kb on - strand, within GFF951 at 951.329 kb on - strand, within GFF951 at 951.334 kb on - strand, within GFF951 at 951.334 kb on - strand, within GFF951 at 951.339 kb on - strand, within GFF951 at 951.368 kb on - strand, within GFF951 at 951.442 kb on + strand, within GFF951 at 951.445 kb on - strand, within GFF951 at 951.475 kb on + strand, within GFF951 at 951.480 kb on + strand, within GFF951 at 951.561 kb on - strand, within GFF951 at 951.578 kb on + strand, within GFF951 at 951.617 kb on - strand, within GFF951 at 951.681 kb on + strand, within GFF951 at 951.751 kb on + strand, within GFF951 at 951.761 kb on + strand, within GFF951 at 951.835 kb on - strand at 951.857 kb on - strand at 951.876 kb on + strand at 951.876 kb on - strand at 951.877 kb on + strand at 951.878 kb on - strand at 951.970 kb on - strand at 952.029 kb on + strand at 952.083 kb on + strand, within GFF952 at 952.120 kb on + strand, within GFF952 at 952.211 kb on - strand, within GFF952 at 952.235 kb on + strand, within GFF952 at 952.245 kb on + strand, within GFF952 at 952.255 kb on + strand, within GFF952 at 952.263 kb on - strand, within GFF952 at 952.274 kb on - strand, within GFF952 at 952.286 kb on + strand, within GFF952 at 952.294 kb on - strand, within GFF952 at 952.301 kb on - strand, within GFF952 at 952.324 kb on + strand, within GFF952 at 952.324 kb on + strand, within GFF952 at 952.325 kb on + strand, within GFF952 at 952.331 kb on - strand, within GFF952 at 952.332 kb on - strand, within GFF952 at 952.332 kb on - strand, within GFF952 at 952.332 kb on - strand, within GFF952 at 952.332 kb on - strand, within GFF952 at 952.332 kb on - strand, within GFF952 at 952.332 kb on - strand, within GFF952 at 952.332 kb on - strand, within GFF952 at 952.341 kb on + strand, within GFF952 at 952.370 kb on - strand, within GFF952 at 952.384 kb on + strand, within GFF952 at 952.437 kb on + strand, within GFF952 at 952.453 kb on - strand, within GFF952 at 952.500 kb on - strand, within GFF952 at 952.526 kb on + strand, within GFF952 at 952.541 kb on - strand, within GFF952 at 952.558 kb on - strand, within GFF952 at 952.603 kb on - strand, within GFF952 at 952.617 kb on - strand, within GFF952 at 952.620 kb on + strand, within GFF952 at 952.620 kb on + strand, within GFF952 at 952.651 kb on - strand, within GFF952 at 952.674 kb on + strand, within GFF952 at 952.716 kb on + strand, within GFF952 at 952.730 kb on - strand, within GFF952 at 952.730 kb on - strand, within GFF952 at 952.745 kb on + strand, within GFF952 at 952.780 kb on - strand, within GFF952 at 952.806 kb on + strand, within GFF952 at 952.806 kb on + strand, within GFF952 at 952.835 kb on - strand, within GFF952 at 952.857 kb on + strand, within GFF952
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 950,082 + GFF949 0.42 -1.5 950,145 - GFF949 0.48 -0.9 950,148 + GFF949 0.48 -0.3 950,193 - GFF949 0.52 -2.2 950,193 - GFF949 0.52 +0.2 950,193 - GFF949 0.52 +0.1 950,286 + GFF949 0.60 +2.2 950,286 + GFF949 0.60 -1.7 950,319 + GFF949 0.63 -0.1 950,319 + GFF949 0.63 -0.5 950,379 - GFF949 0.68 +1.2 950,445 - GFF949 0.74 -0.1 950,450 - GFF949 0.75 -1.1 950,478 - GFF949 0.77 +0.5 950,479 - GFF949 0.77 -0.3 950,487 + GFF949 0.78 +1.1 950,495 - GFF949 0.79 -0.6 950,514 - GFF949 0.80 +1.5 950,529 - GFF949 0.82 -0.7 950,565 + GFF949 0.85 +0.9 950,595 - GFF949 0.88 -0.8 950,609 + GFF949 0.89 +0.7 950,609 - GFF949 0.89 +0.8 950,632 - +0.0 950,634 + -1.2 950,642 - -0.5 950,644 - +0.5 950,697 - -0.4 950,697 - +0.8 950,704 + -2.6 950,713 + +1.7 950,914 + GFF950 0.54 +0.5 950,914 + GFF950 0.54 -0.3 950,938 + GFF950 0.62 -1.1 950,961 + GFF950 0.70 -1.2 950,995 - GFF950 0.81 +0.4 951,007 - GFF950 0.85 -1.9 951,045 + -0.1 951,162 + GFF951 0.13 +0.1 951,162 + GFF951 0.13 -0.9 951,170 - GFF951 0.14 -0.2 951,170 - GFF951 0.14 -0.1 951,170 - GFF951 0.14 -0.1 951,170 - GFF951 0.14 -0.6 951,316 + GFF951 0.32 -0.5 951,316 + GFF951 0.32 +0.3 951,316 + GFF951 0.32 +0.2 951,316 + GFF951 0.32 +1.5 951,316 + GFF951 0.32 -1.3 951,321 + GFF951 0.32 -0.8 951,321 + GFF951 0.32 -1.9 951,321 + GFF951 0.32 -0.8 951,324 - GFF951 0.32 -1.3 951,324 - GFF951 0.32 -0.5 951,324 - GFF951 0.32 -1.1 951,324 - GFF951 0.32 +0.5 951,326 + GFF951 0.33 -1.5 951,326 + GFF951 0.33 -0.2 951,329 - GFF951 0.33 +0.9 951,329 - GFF951 0.33 -0.8 951,334 - GFF951 0.34 -0.3 951,334 - GFF951 0.34 +1.8 951,339 - GFF951 0.34 -0.6 951,368 - GFF951 0.38 -1.0 951,442 + GFF951 0.47 +0.5 951,445 - GFF951 0.47 -0.6 951,475 + GFF951 0.51 -1.3 951,480 + GFF951 0.51 -0.2 951,561 - GFF951 0.61 -1.1 951,578 + GFF951 0.63 -2.6 951,617 - GFF951 0.68 +0.4 951,681 + GFF951 0.76 +1.3 951,751 + GFF951 0.84 +1.4 951,761 + GFF951 0.85 +0.1 951,835 - -0.6 951,857 - +1.8 951,876 + -1.6 951,876 - -0.8 951,877 + -0.3 951,878 - +0.7 951,970 - -3.5 952,029 + -1.1 952,083 + GFF952 0.14 -1.4 952,120 + GFF952 0.17 -2.5 952,211 - GFF952 0.24 -2.9 952,235 + GFF952 0.26 -1.9 952,245 + GFF952 0.27 -1.8 952,255 + GFF952 0.27 -0.6 952,263 - GFF952 0.28 -2.1 952,274 - GFF952 0.29 -2.0 952,286 + GFF952 0.30 -1.7 952,294 - GFF952 0.30 -1.6 952,301 - GFF952 0.31 -2.3 952,324 + GFF952 0.33 -0.9 952,324 + GFF952 0.33 -2.3 952,325 + GFF952 0.33 -2.0 952,331 - GFF952 0.33 -3.4 952,332 - GFF952 0.33 -3.8 952,332 - GFF952 0.33 -1.4 952,332 - GFF952 0.33 -1.9 952,332 - GFF952 0.33 -1.8 952,332 - GFF952 0.33 -0.5 952,332 - GFF952 0.33 -2.6 952,332 - GFF952 0.33 -2.5 952,341 + GFF952 0.34 +0.2 952,370 - GFF952 0.36 -2.2 952,384 + GFF952 0.38 -3.2 952,437 + GFF952 0.42 -1.8 952,453 - GFF952 0.43 -2.3 952,500 - GFF952 0.47 -1.4 952,526 + GFF952 0.49 -3.2 952,541 - GFF952 0.50 +0.2 952,558 - GFF952 0.51 -1.9 952,603 - GFF952 0.55 -1.7 952,617 - GFF952 0.56 -2.9 952,620 + GFF952 0.56 -0.6 952,620 + GFF952 0.56 -3.7 952,651 - GFF952 0.59 -2.4 952,674 + GFF952 0.60 +0.0 952,716 + GFF952 0.64 -3.5 952,730 - GFF952 0.65 -2.3 952,730 - GFF952 0.65 -3.3 952,745 + GFF952 0.66 -3.9 952,780 - GFF952 0.69 -1.5 952,806 + GFF952 0.71 -2.2 952,806 + GFF952 0.71 -2.4 952,835 - GFF952 0.73 -1.1 952,857 + GFF952 0.75 -2.2
Or see this region's nucleotide sequence