Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7 and GFF8 are separated by 281 nucleotides GFF8 and GFF9 are separated by 88 nucleotides GFF9 and GFF10 are separated by 93 nucleotides GFF10 and GFF11 are separated by 156 nucleotides
GFF7 - hypothetical protein, at 4,389 to 4,778
GFF7
GFF8 - hypothetical protein, at 5,060 to 5,461
GFF8
GFF9 - hypothetical protein, at 5,550 to 5,663
GFF9
GFF10 - hypothetical protein, at 5,757 to 6,065
GFF10
GFF11 - hypothetical protein, at 6,222 to 7,784
GFF11
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.554 kb on + strand, within GFF7 at 4.588 kb on + strand, within GFF7 at 4.588 kb on + strand, within GFF7 at 4.588 kb on + strand, within GFF7 at 4.588 kb on + strand, within GFF7 at 4.588 kb on + strand, within GFF7 at 4.588 kb on + strand, within GFF7 at 4.588 kb on + strand, within GFF7 at 4.588 kb on + strand, within GFF7 at 4.596 kb on - strand, within GFF7 at 4.605 kb on - strand, within GFF7 at 4.647 kb on + strand, within GFF7 at 4.668 kb on + strand, within GFF7 at 4.668 kb on + strand, within GFF7 at 4.676 kb on - strand, within GFF7 at 4.678 kb on + strand, within GFF7 at 4.678 kb on + strand, within GFF7 at 4.686 kb on - strand, within GFF7 at 4.686 kb on - strand, within GFF7 at 4.686 kb on - strand, within GFF7 at 4.686 kb on - strand, within GFF7 at 4.696 kb on + strand, within GFF7 at 4.705 kb on + strand, within GFF7 at 4.717 kb on + strand, within GFF7 at 4.721 kb on + strand, within GFF7 at 4.737 kb on - strand, within GFF7 at 4.737 kb on - strand, within GFF7 at 4.739 kb on + strand, within GFF7 at 4.739 kb on + strand, within GFF7 at 4.742 kb on - strand at 4.747 kb on - strand at 4.747 kb on - strand at 4.747 kb on - strand at 4.757 kb on - strand at 4.801 kb on - strand at 4.858 kb on - strand at 4.888 kb on - strand at 5.080 kb on + strand at 5.151 kb on + strand, within GFF8 at 5.151 kb on + strand, within GFF8 at 5.151 kb on + strand, within GFF8 at 5.154 kb on - strand, within GFF8 at 5.176 kb on + strand, within GFF8 at 5.176 kb on + strand, within GFF8 at 5.210 kb on - strand, within GFF8 at 5.212 kb on + strand, within GFF8 at 5.281 kb on - strand, within GFF8 at 5.295 kb on + strand, within GFF8 at 5.308 kb on + strand, within GFF8 at 5.308 kb on + strand, within GFF8 at 5.324 kb on - strand, within GFF8 at 5.343 kb on + strand, within GFF8 at 5.392 kb on + strand, within GFF8 at 5.392 kb on + strand, within GFF8 at 5.400 kb on - strand, within GFF8 at 5.407 kb on + strand, within GFF8 at 5.431 kb on + strand at 5.447 kb on - strand at 5.464 kb on - strand at 5.518 kb on - strand at 5.626 kb on + strand, within GFF9 at 5.636 kb on + strand, within GFF9 at 5.636 kb on + strand, within GFF9 at 5.663 kb on - strand at 5.686 kb on - strand at 5.696 kb on + strand at 5.696 kb on + strand at 5.702 kb on - strand at 5.704 kb on - strand at 5.746 kb on + strand at 5.746 kb on + strand at 5.747 kb on + strand at 5.760 kb on + strand at 5.777 kb on - strand at 5.782 kb on - strand at 5.914 kb on - strand, within GFF10 at 6.183 kb on + strand at 6.245 kb on - strand at 6.273 kb on + strand at 6.281 kb on - strand at 6.281 kb on - strand at 6.281 kb on - strand at 6.302 kb on + strand at 6.322 kb on - strand at 6.341 kb on + strand at 6.349 kb on - strand at 6.351 kb on + strand at 6.354 kb on - strand at 6.356 kb on + strand at 6.356 kb on + strand at 6.357 kb on + strand at 6.357 kb on + strand at 6.357 kb on + strand at 6.359 kb on - strand at 6.364 kb on - strand at 6.365 kb on - strand at 6.403 kb on - strand, within GFF11 at 6.411 kb on - strand, within GFF11 at 6.497 kb on - strand, within GFF11 at 6.519 kb on + strand, within GFF11 at 6.519 kb on + strand, within GFF11 at 6.519 kb on + strand, within GFF11 at 6.519 kb on + strand, within GFF11 at 6.519 kb on + strand, within GFF11 at 6.521 kb on + strand, within GFF11 at 6.527 kb on - strand, within GFF11 at 6.540 kb on - strand, within GFF11 at 6.558 kb on + strand, within GFF11 at 6.566 kb on - strand, within GFF11 at 6.566 kb on - strand, within GFF11 at 6.566 kb on - strand, within GFF11 at 6.566 kb on - strand, within GFF11 at 6.582 kb on + strand, within GFF11 at 6.590 kb on - strand, within GFF11 at 6.590 kb on - strand, within GFF11 at 6.618 kb on + strand, within GFF11 at 6.624 kb on - strand, within GFF11
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 4,554 + GFF7 0.42 +1.0 4,588 + GFF7 0.51 +0.5 4,588 + GFF7 0.51 +0.2 4,588 + GFF7 0.51 +1.2 4,588 + GFF7 0.51 +0.9 4,588 + GFF7 0.51 -1.8 4,588 + GFF7 0.51 +1.1 4,588 + GFF7 0.51 -0.1 4,588 + GFF7 0.51 +0.8 4,596 - GFF7 0.53 -1.3 4,605 - GFF7 0.55 -0.3 4,647 + GFF7 0.66 +1.2 4,668 + GFF7 0.72 +0.1 4,668 + GFF7 0.72 -1.5 4,676 - GFF7 0.74 -1.0 4,678 + GFF7 0.74 +0.3 4,678 + GFF7 0.74 -0.6 4,686 - GFF7 0.76 -1.1 4,686 - GFF7 0.76 -0.8 4,686 - GFF7 0.76 -0.7 4,686 - GFF7 0.76 -0.1 4,696 + GFF7 0.79 +0.9 4,705 + GFF7 0.81 +1.7 4,717 + GFF7 0.84 +0.9 4,721 + GFF7 0.85 -0.1 4,737 - GFF7 0.89 -1.0 4,737 - GFF7 0.89 -1.8 4,739 + GFF7 0.90 -1.5 4,739 + GFF7 0.90 +1.5 4,742 - +0.7 4,747 - -1.5 4,747 - -0.5 4,747 - -0.7 4,757 - +0.5 4,801 - -1.0 4,858 - -0.3 4,888 - +0.6 5,080 + -1.4 5,151 + GFF8 0.23 -0.8 5,151 + GFF8 0.23 +0.7 5,151 + GFF8 0.23 +1.6 5,154 - GFF8 0.23 +0.5 5,176 + GFF8 0.29 +1.0 5,176 + GFF8 0.29 -0.9 5,210 - GFF8 0.37 -0.5 5,212 + GFF8 0.38 -0.2 5,281 - GFF8 0.55 +1.6 5,295 + GFF8 0.58 +0.1 5,308 + GFF8 0.62 +0.4 5,308 + GFF8 0.62 +0.1 5,324 - GFF8 0.66 +0.8 5,343 + GFF8 0.70 +0.4 5,392 + GFF8 0.83 +0.4 5,392 + GFF8 0.83 -0.4 5,400 - GFF8 0.85 -0.8 5,407 + GFF8 0.86 -0.0 5,431 + -1.0 5,447 - -1.4 5,464 - -0.0 5,518 - +0.8 5,626 + GFF9 0.67 +3.7 5,636 + GFF9 0.75 -0.4 5,636 + GFF9 0.75 +0.5 5,663 - +0.9 5,686 - +1.2 5,696 + +0.5 5,696 + +0.4 5,702 - +0.3 5,704 - -1.0 5,746 + -1.5 5,746 + -0.4 5,747 + +0.7 5,760 + +0.1 5,777 - +0.3 5,782 - +0.2 5,914 - GFF10 0.51 -0.7 6,183 + -0.7 6,245 - -1.6 6,273 + -1.4 6,281 - -1.4 6,281 - -0.3 6,281 - -2.3 6,302 + -0.0 6,322 - +0.6 6,341 + -0.4 6,349 - -0.8 6,351 + -0.4 6,354 - -0.1 6,356 + +0.9 6,356 + +0.5 6,357 + -0.4 6,357 + -1.7 6,357 + -0.0 6,359 - -1.1 6,364 - -1.7 6,365 - +0.3 6,403 - GFF11 0.12 +0.8 6,411 - GFF11 0.12 -1.1 6,497 - GFF11 0.18 -1.4 6,519 + GFF11 0.19 +0.8 6,519 + GFF11 0.19 -0.0 6,519 + GFF11 0.19 +0.1 6,519 + GFF11 0.19 +0.0 6,519 + GFF11 0.19 +1.2 6,521 + GFF11 0.19 -1.4 6,527 - GFF11 0.20 +0.2 6,540 - GFF11 0.20 -1.0 6,558 + GFF11 0.21 +0.6 6,566 - GFF11 0.22 -1.5 6,566 - GFF11 0.22 +1.3 6,566 - GFF11 0.22 -1.1 6,566 - GFF11 0.22 +0.3 6,582 + GFF11 0.23 -0.0 6,590 - GFF11 0.24 -0.5 6,590 - GFF11 0.24 -3.4 6,618 + GFF11 0.25 -0.1 6,624 - GFF11 0.26 -0.8
Or see this region's nucleotide sequence