Strain Fitness in Sphingobium sp. HT1-2 around GFF881

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF879 and GFF880 are separated by 447 nucleotidesGFF880 and GFF881 overlap by 4 nucleotidesGFF881 and GFF882 overlap by 4 nucleotides GFF879 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 870,373 to 871,425 GFF879 GFF880 - PsbAd protein, at 871,873 to 872,250 GFF880 GFF881 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 872,247 to 872,891 GFF881 GFF882 - Fumarylacetoacetase (EC 3.7.1.2), at 872,888 to 874,180 GFF882 Position (kb) 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 871.258 kb on - strand, within GFF879at 871.264 kb on - strand, within GFF879at 871.308 kb on + strand, within GFF879at 871.308 kb on + strand, within GFF879at 871.316 kb on - strand, within GFF879at 871.316 kb on - strand, within GFF879at 871.357 kb on + strandat 871.365 kb on - strandat 871.365 kb on - strandat 871.415 kb on + strandat 871.417 kb on - strandat 871.423 kb on - strandat 871.423 kb on - strandat 871.423 kb on - strandat 871.434 kb on - strandat 871.467 kb on - strandat 871.524 kb on - strandat 871.570 kb on - strandat 871.570 kb on - strandat 871.595 kb on - strandat 871.595 kb on - strandat 871.606 kb on - strandat 871.633 kb on + strandat 871.658 kb on - strandat 871.750 kb on - strandat 871.843 kb on - strandat 871.879 kb on + strandat 871.936 kb on + strand, within GFF880at 871.936 kb on - strand, within GFF880at 871.944 kb on - strand, within GFF880at 871.954 kb on - strand, within GFF880at 871.959 kb on - strand, within GFF880at 871.978 kb on - strand, within GFF880at 872.058 kb on + strand, within GFF880at 872.126 kb on - strand, within GFF880at 872.230 kb on - strandat 872.300 kb on - strandat 872.323 kb on + strand, within GFF881at 872.371 kb on + strand, within GFF881at 872.371 kb on + strand, within GFF881at 872.374 kb on - strand, within GFF881at 872.387 kb on + strand, within GFF881at 872.397 kb on - strand, within GFF881at 872.432 kb on - strand, within GFF881at 872.462 kb on - strand, within GFF881at 872.477 kb on + strand, within GFF881at 872.477 kb on + strand, within GFF881at 872.485 kb on - strand, within GFF881at 872.485 kb on - strand, within GFF881at 872.489 kb on + strand, within GFF881at 872.494 kb on + strand, within GFF881at 872.500 kb on + strand, within GFF881at 872.573 kb on + strand, within GFF881at 872.607 kb on + strand, within GFF881at 872.637 kb on + strand, within GFF881at 872.648 kb on + strand, within GFF881at 872.656 kb on - strand, within GFF881at 872.656 kb on - strand, within GFF881at 872.671 kb on + strand, within GFF881at 872.671 kb on - strand, within GFF881at 872.683 kb on + strand, within GFF881at 872.702 kb on - strand, within GFF881at 872.710 kb on + strand, within GFF881at 872.718 kb on - strand, within GFF881at 872.720 kb on - strand, within GFF881at 872.776 kb on + strand, within GFF881at 872.784 kb on - strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.796 kb on + strand, within GFF881at 872.798 kb on + strand, within GFF881at 872.798 kb on + strand, within GFF881at 872.809 kb on - strand, within GFF881at 872.817 kb on + strand, within GFF881at 872.817 kb on + strand, within GFF881at 872.825 kb on - strand, within GFF881at 872.866 kb on - strandat 872.876 kb on + strandat 872.876 kb on + strandat 872.884 kb on - strandat 872.898 kb on + strandat 872.935 kb on + strandat 872.943 kb on - strandat 872.968 kb on + strandat 872.968 kb on + strandat 872.969 kb on + strandat 872.976 kb on - strandat 872.976 kb on - strandat 872.989 kb on + strandat 873.017 kb on - strandat 873.022 kb on - strand, within GFF882at 873.062 kb on + strand, within GFF882at 873.062 kb on + strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.084 kb on + strand, within GFF882at 873.142 kb on + strand, within GFF882at 873.168 kb on + strand, within GFF882at 873.176 kb on - strand, within GFF882at 873.198 kb on - strand, within GFF882at 873.198 kb on - strand, within GFF882at 873.198 kb on - strand, within GFF882at 873.217 kb on + strand, within GFF882at 873.276 kb on + strand, within GFF882at 873.284 kb on - strand, within GFF882at 873.383 kb on - strand, within GFF882at 873.387 kb on - strand, within GFF882at 873.473 kb on + strand, within GFF882at 873.484 kb on + strand, within GFF882at 873.518 kb on + strand, within GFF882at 873.533 kb on + strand, within GFF882at 873.533 kb on + strand, within GFF882at 873.533 kb on + strand, within GFF882at 873.536 kb on - strand, within GFF882at 873.541 kb on - strand, within GFF882at 873.541 kb on - strand, within GFF882at 873.568 kb on + strand, within GFF882at 873.658 kb on - strand, within GFF882at 873.719 kb on - strand, within GFF882at 873.845 kb on + strand, within GFF882at 873.845 kb on + strand, within GFF882at 873.853 kb on - strand, within GFF882at 873.887 kb on - strand, within GFF882

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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871,258 - GFF879 0.84 -0.6
871,264 - GFF879 0.85 +1.5
871,308 + GFF879 0.89 -2.6
871,308 + GFF879 0.89 -1.4
871,316 - GFF879 0.90 +0.5
871,316 - GFF879 0.90 -0.5
871,357 + +0.1
871,365 - -2.6
871,365 - -0.5
871,415 + -0.6
871,417 - -1.4
871,423 - +1.1
871,423 - -0.7
871,423 - +1.3
871,434 - +0.5
871,467 - +2.1
871,524 - -0.5
871,570 - -1.1
871,570 - -0.3
871,595 - -1.2
871,595 - +0.0
871,606 - -0.1
871,633 + -1.6
871,658 - +0.4
871,750 - -0.4
871,843 - +0.6
871,879 + -1.7
871,936 + GFF880 0.17 -1.1
871,936 - GFF880 0.17 -0.6
871,944 - GFF880 0.19 +0.2
871,954 - GFF880 0.21 +1.1
871,959 - GFF880 0.23 +1.2
871,978 - GFF880 0.28 -1.0
872,058 + GFF880 0.49 -0.0
872,126 - GFF880 0.67 -0.0
872,230 - +0.1
872,300 - -0.2
872,323 + GFF881 0.12 -0.6
872,371 + GFF881 0.19 -2.0
872,371 + GFF881 0.19 +0.1
872,374 - GFF881 0.20 -1.1
872,387 + GFF881 0.22 +0.2
872,397 - GFF881 0.23 +0.0
872,432 - GFF881 0.29 +1.4
872,462 - GFF881 0.33 -0.7
872,477 + GFF881 0.36 -2.1
872,477 + GFF881 0.36 -0.5
872,485 - GFF881 0.37 +0.2
872,485 - GFF881 0.37 +0.4
872,489 + GFF881 0.38 +0.7
872,494 + GFF881 0.38 +0.8
872,500 + GFF881 0.39 +0.5
872,573 + GFF881 0.51 -0.8
872,607 + GFF881 0.56 -0.6
872,637 + GFF881 0.60 -1.0
872,648 + GFF881 0.62 -0.1
872,656 - GFF881 0.63 -0.3
872,656 - GFF881 0.63 -0.3
872,671 + GFF881 0.66 -0.3
872,671 - GFF881 0.66 +0.6
872,683 + GFF881 0.68 -0.0
872,702 - GFF881 0.71 +0.4
872,710 + GFF881 0.72 +0.8
872,718 - GFF881 0.73 +0.1
872,720 - GFF881 0.73 +1.3
872,776 + GFF881 0.82 -0.6
872,784 - GFF881 0.83 +0.4
872,786 + GFF881 0.84 -0.0
872,786 + GFF881 0.84 +0.2
872,786 + GFF881 0.84 +0.5
872,786 + GFF881 0.84 -0.3
872,786 + GFF881 0.84 +0.7
872,786 + GFF881 0.84 -0.1
872,786 + GFF881 0.84 -1.6
872,786 + GFF881 0.84 +0.1
872,786 + GFF881 0.84 +0.5
872,786 + GFF881 0.84 +0.9
872,786 + GFF881 0.84 -1.7
872,786 + GFF881 0.84 -1.2
872,786 + GFF881 0.84 +1.5
872,786 + GFF881 0.84 -0.5
872,786 + GFF881 0.84 +0.2
872,786 + GFF881 0.84 +0.3
872,786 + GFF881 0.84 -0.6
872,786 + GFF881 0.84 -2.6
872,794 - GFF881 0.85 -1.1
872,794 - GFF881 0.85 -1.4
872,794 - GFF881 0.85 +0.1
872,794 - GFF881 0.85 +0.3
872,794 - GFF881 0.85 +0.3
872,794 - GFF881 0.85 +0.2
872,794 - GFF881 0.85 -0.8
872,794 - GFF881 0.85 +0.8
872,794 - GFF881 0.85 +0.0
872,794 - GFF881 0.85 +0.1
872,796 + GFF881 0.85 +0.2
872,798 + GFF881 0.85 -1.1
872,798 + GFF881 0.85 -2.0
872,809 - GFF881 0.87 -0.8
872,817 + GFF881 0.88 -0.3
872,817 + GFF881 0.88 +0.8
872,825 - GFF881 0.90 +1.4
872,866 - -1.1
872,876 + +1.0
872,876 + +0.3
872,884 - +1.2
872,898 + +0.5
872,935 + +0.7
872,943 - -1.7
872,968 + -1.2
872,968 + -0.7
872,969 + +2.0
872,976 - -2.6
872,976 - +1.8
872,989 + -0.4
873,017 - +0.4
873,022 - GFF882 0.10 -0.0
873,062 + GFF882 0.13 -0.6
873,062 + GFF882 0.13 -0.5
873,070 - GFF882 0.14 +1.2
873,070 - GFF882 0.14 -2.7
873,070 - GFF882 0.14 +0.7
873,070 - GFF882 0.14 +0.2
873,084 + GFF882 0.15 +1.7
873,142 + GFF882 0.20 +0.3
873,168 + GFF882 0.22 -0.9
873,176 - GFF882 0.22 +0.2
873,198 - GFF882 0.24 +0.2
873,198 - GFF882 0.24 -0.4
873,198 - GFF882 0.24 +0.6
873,217 + GFF882 0.25 -1.2
873,276 + GFF882 0.30 +1.0
873,284 - GFF882 0.31 +1.3
873,383 - GFF882 0.38 +0.4
873,387 - GFF882 0.39 -1.4
873,473 + GFF882 0.45 -0.5
873,484 + GFF882 0.46 -0.6
873,518 + GFF882 0.49 +0.0
873,533 + GFF882 0.50 +0.4
873,533 + GFF882 0.50 -0.3
873,533 + GFF882 0.50 +0.7
873,536 - GFF882 0.50 -1.2
873,541 - GFF882 0.51 -0.6
873,541 - GFF882 0.51 -0.5
873,568 + GFF882 0.53 +1.0
873,658 - GFF882 0.60 -2.8
873,719 - GFF882 0.64 +0.3
873,845 + GFF882 0.74 -0.2
873,845 + GFF882 0.74 -0.6
873,853 - GFF882 0.75 +0.3
873,887 - GFF882 0.77 -0.1

Or see this region's nucleotide sequence