Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF830 and GFF831 are separated by 42 nucleotides GFF831 and GFF832 are separated by 11 nucleotides GFF832 and GFF833 are separated by 12 nucleotides
GFF830 - Outer membrane vitamin B12 receptor BtuB, at 817,273 to 819,228
GFF830
GFF831 - hypothetical protein, at 819,271 to 819,612
GFF831
GFF832 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 819,624 to 820,484
GFF832
GFF833 - hypothetical protein, at 820,497 to 820,895
GFF833
Position (kb) 819
820 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 818.321 kb on - strand, within GFF830 at 818.343 kb on + strand, within GFF830 at 818.346 kb on - strand, within GFF830 at 818.351 kb on - strand, within GFF830 at 818.382 kb on - strand, within GFF830 at 818.389 kb on + strand, within GFF830 at 818.390 kb on - strand, within GFF830 at 818.402 kb on - strand, within GFF830 at 818.430 kb on + strand, within GFF830 at 818.430 kb on + strand, within GFF830 at 818.438 kb on - strand, within GFF830 at 818.438 kb on - strand, within GFF830 at 818.472 kb on - strand, within GFF830 at 818.493 kb on + strand, within GFF830 at 818.493 kb on + strand, within GFF830 at 818.501 kb on - strand, within GFF830 at 818.522 kb on + strand, within GFF830 at 818.522 kb on + strand, within GFF830 at 818.530 kb on - strand, within GFF830 at 818.530 kb on - strand, within GFF830 at 818.548 kb on - strand, within GFF830 at 818.550 kb on + strand, within GFF830 at 818.550 kb on + strand, within GFF830 at 818.552 kb on + strand, within GFF830 at 818.558 kb on - strand, within GFF830 at 818.583 kb on - strand, within GFF830 at 818.588 kb on - strand, within GFF830 at 818.620 kb on - strand, within GFF830 at 818.659 kb on + strand, within GFF830 at 818.674 kb on + strand, within GFF830 at 818.682 kb on - strand, within GFF830 at 818.721 kb on - strand, within GFF830 at 818.787 kb on - strand, within GFF830 at 818.787 kb on - strand, within GFF830 at 818.793 kb on + strand, within GFF830 at 818.795 kb on - strand, within GFF830 at 818.795 kb on - strand, within GFF830 at 818.795 kb on - strand, within GFF830 at 818.801 kb on - strand, within GFF830 at 818.801 kb on - strand, within GFF830 at 818.801 kb on - strand, within GFF830 at 818.801 kb on - strand, within GFF830 at 818.872 kb on + strand, within GFF830 at 818.886 kb on + strand, within GFF830 at 818.912 kb on - strand, within GFF830 at 818.986 kb on - strand, within GFF830 at 818.993 kb on - strand, within GFF830 at 819.024 kb on - strand, within GFF830 at 819.025 kb on - strand, within GFF830 at 819.044 kb on + strand at 819.049 kb on + strand at 819.052 kb on - strand at 819.057 kb on + strand at 819.104 kb on + strand at 819.115 kb on + strand at 819.117 kb on - strand at 819.123 kb on - strand at 819.193 kb on - strand at 819.193 kb on - strand at 819.234 kb on - strand at 819.263 kb on + strand at 819.273 kb on - strand at 819.333 kb on + strand, within GFF831 at 819.337 kb on - strand, within GFF831 at 819.346 kb on + strand, within GFF831 at 819.351 kb on + strand, within GFF831 at 819.351 kb on - strand, within GFF831 at 819.351 kb on - strand, within GFF831 at 819.369 kb on - strand, within GFF831 at 819.372 kb on - strand, within GFF831 at 819.374 kb on - strand, within GFF831 at 819.389 kb on - strand, within GFF831 at 819.389 kb on - strand, within GFF831 at 819.434 kb on - strand, within GFF831 at 819.434 kb on - strand, within GFF831 at 819.485 kb on - strand, within GFF831 at 819.485 kb on - strand, within GFF831 at 819.487 kb on - strand, within GFF831 at 819.497 kb on + strand, within GFF831 at 819.505 kb on - strand, within GFF831 at 819.513 kb on - strand, within GFF831 at 819.575 kb on + strand, within GFF831 at 819.590 kb on + strand at 819.607 kb on + strand at 819.607 kb on + strand at 819.615 kb on - strand at 819.615 kb on - strand at 819.615 kb on - strand at 819.683 kb on + strand at 819.705 kb on - strand at 819.749 kb on - strand, within GFF832 at 819.760 kb on + strand, within GFF832 at 819.775 kb on - strand, within GFF832 at 819.790 kb on - strand, within GFF832 at 819.835 kb on - strand, within GFF832 at 819.879 kb on + strand, within GFF832 at 819.884 kb on - strand, within GFF832 at 819.922 kb on + strand, within GFF832 at 819.967 kb on + strand, within GFF832 at 819.974 kb on + strand, within GFF832 at 819.974 kb on + strand, within GFF832 at 819.974 kb on + strand, within GFF832 at 819.974 kb on + strand, within GFF832 at 819.981 kb on + strand, within GFF832 at 819.982 kb on - strand, within GFF832 at 819.982 kb on - strand, within GFF832 at 819.982 kb on - strand, within GFF832 at 819.982 kb on - strand, within GFF832 at 819.986 kb on + strand, within GFF832 at 819.989 kb on - strand, within GFF832 at 819.994 kb on - strand, within GFF832 at 819.994 kb on - strand, within GFF832 at 819.994 kb on - strand, within GFF832 at 820.004 kb on + strand, within GFF832 at 820.019 kb on + strand, within GFF832 at 820.019 kb on + strand, within GFF832 at 820.021 kb on + strand, within GFF832 at 820.029 kb on - strand, within GFF832 at 820.043 kb on + strand, within GFF832 at 820.043 kb on + strand, within GFF832 at 820.051 kb on - strand, within GFF832 at 820.051 kb on - strand, within GFF832 at 820.071 kb on - strand, within GFF832 at 820.107 kb on + strand, within GFF832 at 820.115 kb on - strand, within GFF832 at 820.115 kb on - strand, within GFF832 at 820.115 kb on - strand, within GFF832 at 820.122 kb on + strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.135 kb on - strand, within GFF832 at 820.149 kb on - strand, within GFF832 at 820.150 kb on - strand, within GFF832 at 820.150 kb on - strand, within GFF832 at 820.150 kb on - strand, within GFF832 at 820.159 kb on + strand, within GFF832 at 820.224 kb on + strand, within GFF832 at 820.232 kb on - strand, within GFF832 at 820.248 kb on - strand, within GFF832 at 820.266 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.279 kb on - strand, within GFF832 at 820.284 kb on - strand, within GFF832 at 820.284 kb on - strand, within GFF832 at 820.335 kb on - strand, within GFF832 at 820.339 kb on + strand, within GFF832 at 820.339 kb on + strand, within GFF832 at 820.354 kb on + strand, within GFF832 at 820.354 kb on - strand, within GFF832 at 820.359 kb on + strand, within GFF832 at 820.364 kb on + strand, within GFF832 at 820.372 kb on - strand, within GFF832 at 820.377 kb on - strand, within GFF832 at 820.377 kb on - strand, within GFF832 at 820.379 kb on + strand, within GFF832 at 820.392 kb on - strand, within GFF832 at 820.397 kb on - strand, within GFF832 at 820.399 kb on + strand at 820.403 kb on + strand at 820.403 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.411 kb on - strand at 820.412 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.436 kb on - strand at 820.437 kb on - strand at 820.460 kb on + strand at 820.460 kb on + strand at 820.460 kb on + strand at 820.468 kb on - strand at 820.468 kb on - strand at 820.468 kb on - strand at 820.490 kb on + strand at 820.498 kb on - strand at 820.500 kb on + strand at 820.502 kb on - strand at 820.503 kb on - strand at 820.590 kb on + strand, within GFF833 at 820.591 kb on + strand, within GFF833 at 820.604 kb on + strand, within GFF833
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 818,321 - GFF830 0.54 -0.1 818,343 + GFF830 0.55 -0.5 818,346 - GFF830 0.55 -0.5 818,351 - GFF830 0.55 -0.6 818,382 - GFF830 0.57 -1.2 818,389 + GFF830 0.57 -0.8 818,390 - GFF830 0.57 +0.0 818,402 - GFF830 0.58 +1.5 818,430 + GFF830 0.59 -0.6 818,430 + GFF830 0.59 -1.2 818,438 - GFF830 0.60 -1.0 818,438 - GFF830 0.60 -0.1 818,472 - GFF830 0.61 -2.2 818,493 + GFF830 0.62 -0.3 818,493 + GFF830 0.62 +0.4 818,501 - GFF830 0.63 -0.5 818,522 + GFF830 0.64 +0.7 818,522 + GFF830 0.64 -0.2 818,530 - GFF830 0.64 +0.4 818,530 - GFF830 0.64 +0.1 818,548 - GFF830 0.65 -1.0 818,550 + GFF830 0.65 -0.7 818,550 + GFF830 0.65 -0.3 818,552 + GFF830 0.65 +0.1 818,558 - GFF830 0.66 -0.3 818,583 - GFF830 0.67 -0.1 818,588 - GFF830 0.67 +0.7 818,620 - GFF830 0.69 -0.1 818,659 + GFF830 0.71 -1.4 818,674 + GFF830 0.72 -2.2 818,682 - GFF830 0.72 -1.9 818,721 - GFF830 0.74 +0.3 818,787 - GFF830 0.77 +0.0 818,787 - GFF830 0.77 +0.8 818,793 + GFF830 0.78 -0.8 818,795 - GFF830 0.78 -1.7 818,795 - GFF830 0.78 -1.2 818,795 - GFF830 0.78 -1.0 818,801 - GFF830 0.78 -0.4 818,801 - GFF830 0.78 -1.9 818,801 - GFF830 0.78 -0.8 818,801 - GFF830 0.78 -1.1 818,872 + GFF830 0.82 -1.1 818,886 + GFF830 0.82 -0.9 818,912 - GFF830 0.84 +0.3 818,986 - GFF830 0.88 +0.5 818,993 - GFF830 0.88 +0.5 819,024 - GFF830 0.90 +0.3 819,025 - GFF830 0.90 -0.8 819,044 + -1.1 819,049 + -0.7 819,052 - -0.6 819,057 + -0.3 819,104 + -0.8 819,115 + -1.4 819,117 - +0.2 819,123 - -0.3 819,193 - +0.0 819,193 - +0.6 819,234 - -1.0 819,263 + -0.6 819,273 - -0.2 819,333 + GFF831 0.18 -2.1 819,337 - GFF831 0.19 +0.1 819,346 + GFF831 0.22 -0.6 819,351 + GFF831 0.23 -1.9 819,351 - GFF831 0.23 -1.1 819,351 - GFF831 0.23 -0.5 819,369 - GFF831 0.29 -1.2 819,372 - GFF831 0.30 -1.9 819,374 - GFF831 0.30 +0.6 819,389 - GFF831 0.35 -1.1 819,389 - GFF831 0.35 +0.5 819,434 - GFF831 0.48 -0.8 819,434 - GFF831 0.48 -0.6 819,485 - GFF831 0.63 -2.4 819,485 - GFF831 0.63 -1.2 819,487 - GFF831 0.63 -2.5 819,497 + GFF831 0.66 -0.6 819,505 - GFF831 0.68 +1.6 819,513 - GFF831 0.71 -1.5 819,575 + GFF831 0.89 -1.0 819,590 + +0.5 819,607 + -0.0 819,607 + -0.1 819,615 - +0.9 819,615 - +0.3 819,615 - +1.2 819,683 + +0.9 819,705 - -0.9 819,749 - GFF832 0.15 +0.9 819,760 + GFF832 0.16 -0.1 819,775 - GFF832 0.18 -0.4 819,790 - GFF832 0.19 -0.1 819,835 - GFF832 0.25 +0.4 819,879 + GFF832 0.30 +0.8 819,884 - GFF832 0.30 +1.0 819,922 + GFF832 0.35 -0.9 819,967 + GFF832 0.40 -0.1 819,974 + GFF832 0.41 -1.5 819,974 + GFF832 0.41 +0.8 819,974 + GFF832 0.41 +0.5 819,974 + GFF832 0.41 -1.3 819,981 + GFF832 0.41 +0.4 819,982 - GFF832 0.42 -0.3 819,982 - GFF832 0.42 -0.9 819,982 - GFF832 0.42 -0.5 819,982 - GFF832 0.42 -0.4 819,986 + GFF832 0.42 +0.2 819,989 - GFF832 0.42 -0.5 819,994 - GFF832 0.43 -0.1 819,994 - GFF832 0.43 +0.8 819,994 - GFF832 0.43 +1.5 820,004 + GFF832 0.44 -0.2 820,019 + GFF832 0.46 -0.6 820,019 + GFF832 0.46 -1.4 820,021 + GFF832 0.46 +0.4 820,029 - GFF832 0.47 +0.9 820,043 + GFF832 0.49 +1.8 820,043 + GFF832 0.49 +2.0 820,051 - GFF832 0.50 +0.2 820,051 - GFF832 0.50 +0.7 820,071 - GFF832 0.52 -0.6 820,107 + GFF832 0.56 -1.4 820,115 - GFF832 0.57 +0.7 820,115 - GFF832 0.57 -0.5 820,115 - GFF832 0.57 -0.1 820,122 + GFF832 0.58 +2.8 820,130 - GFF832 0.59 +0.7 820,130 - GFF832 0.59 +0.3 820,130 - GFF832 0.59 +0.6 820,130 - GFF832 0.59 +0.1 820,130 - GFF832 0.59 -0.2 820,130 - GFF832 0.59 -1.7 820,130 - GFF832 0.59 +1.3 820,130 - GFF832 0.59 -0.6 820,130 - GFF832 0.59 +0.7 820,135 - GFF832 0.59 -1.2 820,149 - GFF832 0.61 +0.9 820,150 - GFF832 0.61 +0.5 820,150 - GFF832 0.61 -0.2 820,150 - GFF832 0.61 -0.2 820,159 + GFF832 0.62 -1.3 820,224 + GFF832 0.70 +0.7 820,232 - GFF832 0.71 -0.3 820,248 - GFF832 0.72 +0.8 820,266 + GFF832 0.75 +0.4 820,271 + GFF832 0.75 +1.5 820,271 + GFF832 0.75 -0.8 820,271 + GFF832 0.75 +0.1 820,271 + GFF832 0.75 +0.6 820,271 + GFF832 0.75 -1.6 820,276 + GFF832 0.76 +0.5 820,276 + GFF832 0.76 -0.2 820,276 + GFF832 0.76 -0.9 820,276 + GFF832 0.76 +0.5 820,276 + GFF832 0.76 -0.5 820,276 + GFF832 0.76 -0.3 820,276 + GFF832 0.76 -1.9 820,279 - GFF832 0.76 -1.1 820,284 - GFF832 0.77 -1.6 820,284 - GFF832 0.77 +0.9 820,335 - GFF832 0.83 +0.1 820,339 + GFF832 0.83 -1.3 820,339 + GFF832 0.83 +0.2 820,354 + GFF832 0.85 -0.2 820,354 - GFF832 0.85 -0.7 820,359 + GFF832 0.85 -1.6 820,364 + GFF832 0.86 -0.8 820,372 - GFF832 0.87 +0.2 820,377 - GFF832 0.87 -0.5 820,377 - GFF832 0.87 +2.5 820,379 + GFF832 0.88 +0.9 820,392 - GFF832 0.89 -1.6 820,397 - GFF832 0.90 -0.8 820,399 + -1.1 820,403 + -1.1 820,403 + -0.6 820,409 + -2.0 820,409 + -0.9 820,409 + -0.4 820,409 + +0.7 820,409 + -0.4 820,409 + -0.5 820,409 + -1.8 820,409 + -0.7 820,409 + +2.2 820,409 + -0.6 820,409 + +0.9 820,409 + -0.2 820,409 + +0.3 820,409 + -0.3 820,409 + +0.3 820,409 + -0.7 820,409 + +0.5 820,409 + -0.7 820,409 + +0.4 820,409 + -0.1 820,409 + -0.6 820,409 + +0.3 820,409 + +1.3 820,409 + -0.8 820,409 + -0.8 820,409 + +0.8 820,411 - +1.8 820,412 - -0.2 820,417 - -0.3 820,417 - -1.1 820,417 - -0.0 820,417 - -0.9 820,417 - +0.9 820,417 - -0.3 820,417 - +0.9 820,417 - -0.7 820,417 - -1.3 820,417 - -0.9 820,417 - -0.1 820,417 - +0.2 820,417 - -0.5 820,417 - +1.4 820,417 - +0.8 820,417 - -0.5 820,417 - +0.9 820,417 - -0.2 820,417 - +0.7 820,417 - -1.2 820,436 - +1.7 820,437 - +0.5 820,460 + -0.2 820,460 + -0.8 820,460 + -0.9 820,468 - -0.6 820,468 - -1.4 820,468 - +0.9 820,490 + -0.2 820,498 - +0.3 820,500 + -1.2 820,502 - +1.5 820,503 - +0.3 820,590 + GFF833 0.23 +0.1 820,591 + GFF833 0.24 +0.5 820,604 + GFF833 0.27 +0.5
Or see this region's nucleotide sequence