Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF810 and GFF811 overlap by 38 nucleotides GFF811 and GFF812 are separated by 155 nucleotides GFF812 and GFF813 are separated by 37 nucleotides GFF813 and GFF814 are separated by 5 nucleotides
GFF810 - Proton/glutamate symporter @ Sodium/glutamate symporter, at 798,970 to 800,298
GFF810
GFF811 - Putative reductase, at 800,261 to 800,830
GFF811
GFF812 - hypothetical protein, at 800,986 to 801,915
GFF812
GFF813 - hypothetical protein, at 801,953 to 802,135
GFF813
GFF814 - Adenylosuccinate synthetase (EC 6.3.4.4), at 802,141 to 803,430
GFF814
Position (kb) 800
801
802 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 799.990 kb on + strand, within GFF810 at 799.990 kb on - strand, within GFF810 at 800.029 kb on - strand, within GFF810 at 800.029 kb on - strand, within GFF810 at 800.035 kb on - strand, within GFF810 at 800.035 kb on - strand, within GFF810 at 800.035 kb on - strand, within GFF810 at 800.035 kb on - strand, within GFF810 at 800.104 kb on + strand, within GFF810 at 800.159 kb on + strand, within GFF810 at 800.159 kb on + strand, within GFF810 at 800.159 kb on + strand, within GFF810 at 800.164 kb on + strand, within GFF810 at 800.167 kb on - strand at 800.167 kb on - strand at 800.170 kb on + strand at 800.201 kb on - strand at 800.238 kb on + strand at 800.289 kb on + strand at 800.289 kb on + strand at 800.289 kb on + strand at 800.289 kb on + strand at 800.291 kb on + strand at 800.291 kb on + strand at 800.297 kb on - strand at 800.322 kb on + strand, within GFF811 at 800.349 kb on + strand, within GFF811 at 800.349 kb on + strand, within GFF811 at 800.350 kb on - strand, within GFF811 at 800.350 kb on - strand, within GFF811 at 800.355 kb on + strand, within GFF811 at 800.355 kb on + strand, within GFF811 at 800.359 kb on + strand, within GFF811 at 800.367 kb on - strand, within GFF811 at 800.386 kb on - strand, within GFF811 at 800.402 kb on - strand, within GFF811 at 800.402 kb on - strand, within GFF811 at 800.402 kb on - strand, within GFF811 at 800.468 kb on - strand, within GFF811 at 800.468 kb on - strand, within GFF811 at 800.490 kb on - strand, within GFF811 at 800.580 kb on - strand, within GFF811 at 800.643 kb on + strand, within GFF811 at 800.662 kb on + strand, within GFF811 at 800.678 kb on - strand, within GFF811 at 800.704 kb on + strand, within GFF811 at 800.714 kb on + strand, within GFF811 at 800.717 kb on - strand, within GFF811 at 800.719 kb on + strand, within GFF811 at 800.727 kb on + strand, within GFF811 at 800.727 kb on - strand, within GFF811 at 800.739 kb on - strand, within GFF811 at 800.748 kb on - strand, within GFF811 at 800.748 kb on - strand, within GFF811 at 800.748 kb on - strand, within GFF811 at 800.748 kb on - strand, within GFF811 at 800.778 kb on - strand at 800.778 kb on - strand at 800.802 kb on - strand at 800.826 kb on + strand at 800.836 kb on + strand at 800.838 kb on + strand at 800.867 kb on - strand at 800.883 kb on + strand at 800.883 kb on + strand at 800.993 kb on + strand at 800.993 kb on + strand at 800.999 kb on - strand at 801.006 kb on + strand at 801.011 kb on + strand at 801.011 kb on + strand at 801.011 kb on + strand at 801.011 kb on + strand at 801.011 kb on + strand at 801.019 kb on - strand at 801.024 kb on - strand at 801.027 kb on + strand at 801.029 kb on - strand at 801.095 kb on + strand, within GFF812 at 801.095 kb on + strand, within GFF812 at 801.095 kb on + strand, within GFF812 at 801.103 kb on - strand, within GFF812 at 801.123 kb on - strand, within GFF812 at 801.125 kb on - strand, within GFF812 at 801.130 kb on - strand, within GFF812 at 801.169 kb on - strand, within GFF812 at 801.169 kb on - strand, within GFF812 at 801.169 kb on - strand, within GFF812 at 801.229 kb on - strand, within GFF812 at 801.237 kb on - strand, within GFF812 at 801.254 kb on - strand, within GFF812 at 801.254 kb on - strand, within GFF812 at 801.272 kb on - strand, within GFF812 at 801.425 kb on + strand, within GFF812 at 801.425 kb on + strand, within GFF812 at 801.433 kb on - strand, within GFF812 at 801.507 kb on + strand, within GFF812 at 801.521 kb on - strand, within GFF812 at 801.573 kb on + strand, within GFF812 at 801.618 kb on - strand, within GFF812 at 801.624 kb on - strand, within GFF812 at 801.755 kb on + strand, within GFF812 at 801.768 kb on + strand, within GFF812 at 801.848 kb on + strand at 801.856 kb on + strand at 801.864 kb on - strand at 801.869 kb on - strand at 801.869 kb on - strand at 801.874 kb on - strand at 801.881 kb on - strand at 801.940 kb on + strand at 801.980 kb on + strand, within GFF813 at 801.985 kb on + strand, within GFF813 at 802.047 kb on + strand, within GFF813 at 802.047 kb on + strand, within GFF813 at 802.091 kb on - strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.095 kb on + strand, within GFF813 at 802.103 kb on - strand, within GFF813 at 802.103 kb on - strand, within GFF813 at 802.126 kb on + strand at 802.138 kb on + strand at 802.146 kb on - strand at 802.167 kb on + strand at 802.182 kb on + strand at 802.192 kb on + strand at 802.192 kb on + strand at 802.201 kb on - strand at 802.205 kb on - strand at 802.209 kb on - strand at 802.217 kb on + strand at 802.225 kb on - strand at 802.265 kb on - strand at 802.277 kb on - strand, within GFF814 at 802.302 kb on - strand, within GFF814 at 802.313 kb on - strand, within GFF814 at 802.334 kb on + strand, within GFF814 at 802.334 kb on + strand, within GFF814 at 802.340 kb on + strand, within GFF814 at 802.340 kb on + strand, within GFF814 at 802.342 kb on - strand, within GFF814 at 802.342 kb on - strand, within GFF814 at 802.342 kb on - strand, within GFF814 at 802.342 kb on - strand, within GFF814 at 802.342 kb on - strand, within GFF814 at 802.342 kb on - strand, within GFF814 at 802.342 kb on - strand, within GFF814 at 802.348 kb on - strand, within GFF814 at 802.348 kb on - strand, within GFF814 at 802.375 kb on + strand, within GFF814 at 802.377 kb on - strand, within GFF814 at 802.416 kb on + strand, within GFF814 at 802.416 kb on + strand, within GFF814 at 802.430 kb on + strand, within GFF814 at 802.439 kb on + strand, within GFF814 at 802.442 kb on - strand, within GFF814 at 802.442 kb on - strand, within GFF814 at 802.452 kb on - strand, within GFF814 at 802.457 kb on - strand, within GFF814 at 802.462 kb on - strand, within GFF814 at 802.497 kb on - strand, within GFF814 at 802.497 kb on - strand, within GFF814 at 802.497 kb on - strand, within GFF814 at 802.497 kb on - strand, within GFF814 at 802.508 kb on - strand, within GFF814 at 802.603 kb on - strand, within GFF814 at 802.624 kb on + strand, within GFF814 at 802.624 kb on + strand, within GFF814 at 802.625 kb on + strand, within GFF814 at 802.625 kb on + strand, within GFF814 at 802.625 kb on + strand, within GFF814 at 802.625 kb on + strand, within GFF814 at 802.625 kb on + strand, within GFF814 at 802.625 kb on + strand, within GFF814 at 802.625 kb on + strand, within GFF814 at 802.633 kb on - strand, within GFF814 at 802.633 kb on - strand, within GFF814 at 802.639 kb on - strand, within GFF814 at 802.655 kb on - strand, within GFF814 at 802.661 kb on + strand, within GFF814 at 802.669 kb on + strand, within GFF814 at 802.674 kb on + strand, within GFF814 at 802.674 kb on + strand, within GFF814 at 802.676 kb on - strand, within GFF814 at 802.682 kb on - strand, within GFF814 at 802.682 kb on - strand, within GFF814 at 802.684 kb on + strand, within GFF814 at 802.694 kb on + strand, within GFF814 at 802.694 kb on + strand, within GFF814 at 802.706 kb on + strand, within GFF814 at 802.714 kb on - strand, within GFF814 at 802.714 kb on - strand, within GFF814 at 802.745 kb on + strand, within GFF814 at 802.754 kb on + strand, within GFF814 at 802.769 kb on + strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.779 kb on + strand, within GFF814 at 802.779 kb on - strand, within GFF814 at 802.783 kb on - strand, within GFF814 at 802.812 kb on + strand, within GFF814 at 802.817 kb on + strand, within GFF814 at 802.820 kb on - strand, within GFF814 at 802.825 kb on - strand, within GFF814 at 802.835 kb on - strand, within GFF814 at 802.835 kb on - strand, within GFF814 at 802.837 kb on + strand, within GFF814 at 802.845 kb on - strand, within GFF814 at 802.845 kb on - strand, within GFF814 at 802.868 kb on - strand, within GFF814 at 802.871 kb on + strand, within GFF814 at 802.871 kb on + strand, within GFF814 at 802.879 kb on - strand, within GFF814 at 802.879 kb on - strand, within GFF814 at 802.891 kb on + strand, within GFF814
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 799,990 + GFF810 0.77 -0.2 799,990 - GFF810 0.77 -0.6 800,029 - GFF810 0.80 +0.2 800,029 - GFF810 0.80 -1.4 800,035 - GFF810 0.80 -0.1 800,035 - GFF810 0.80 +0.7 800,035 - GFF810 0.80 +0.1 800,035 - GFF810 0.80 +0.1 800,104 + GFF810 0.85 +0.4 800,159 + GFF810 0.89 -2.8 800,159 + GFF810 0.89 -0.1 800,159 + GFF810 0.89 +0.7 800,164 + GFF810 0.90 -1.3 800,167 - +0.5 800,167 - -0.2 800,170 + +0.3 800,201 - -0.6 800,238 + -1.1 800,289 + +0.0 800,289 + +1.1 800,289 + -0.9 800,289 + +0.4 800,291 + -0.1 800,291 + +1.7 800,297 - +0.6 800,322 + GFF811 0.11 +0.6 800,349 + GFF811 0.15 +0.7 800,349 + GFF811 0.15 +0.1 800,350 - GFF811 0.16 -1.2 800,350 - GFF811 0.16 +1.1 800,355 + GFF811 0.16 -0.4 800,355 + GFF811 0.16 -1.2 800,359 + GFF811 0.17 -0.4 800,367 - GFF811 0.19 -0.2 800,386 - GFF811 0.22 +0.5 800,402 - GFF811 0.25 -0.5 800,402 - GFF811 0.25 -0.1 800,402 - GFF811 0.25 +1.0 800,468 - GFF811 0.36 -0.0 800,468 - GFF811 0.36 +0.4 800,490 - GFF811 0.40 +0.2 800,580 - GFF811 0.56 +0.4 800,643 + GFF811 0.67 -0.4 800,662 + GFF811 0.70 -1.3 800,678 - GFF811 0.73 -0.5 800,704 + GFF811 0.78 -0.8 800,714 + GFF811 0.79 +0.5 800,717 - GFF811 0.80 +0.1 800,719 + GFF811 0.80 +0.4 800,727 + GFF811 0.82 -0.9 800,727 - GFF811 0.82 +0.3 800,739 - GFF811 0.84 +0.3 800,748 - GFF811 0.85 -1.1 800,748 - GFF811 0.85 -0.1 800,748 - GFF811 0.85 -0.1 800,748 - GFF811 0.85 +0.5 800,778 - +0.4 800,778 - -2.0 800,802 - +0.3 800,826 + +0.6 800,836 + -0.0 800,838 + +0.7 800,867 - +0.0 800,883 + -0.8 800,883 + -0.4 800,993 + -1.1 800,993 + -0.1 800,999 - +0.5 801,006 + -0.3 801,011 + +0.0 801,011 + -1.8 801,011 + -1.9 801,011 + -0.8 801,011 + +0.1 801,019 - -0.6 801,024 - -0.8 801,027 + -0.0 801,029 - +0.2 801,095 + GFF812 0.12 -0.5 801,095 + GFF812 0.12 -0.9 801,095 + GFF812 0.12 -1.1 801,103 - GFF812 0.13 -0.9 801,123 - GFF812 0.15 -1.1 801,125 - GFF812 0.15 +0.9 801,130 - GFF812 0.15 +0.5 801,169 - GFF812 0.20 +0.8 801,169 - GFF812 0.20 +0.6 801,169 - GFF812 0.20 -0.4 801,229 - GFF812 0.26 -0.9 801,237 - GFF812 0.27 -1.4 801,254 - GFF812 0.29 -0.7 801,254 - GFF812 0.29 +0.3 801,272 - GFF812 0.31 -0.5 801,425 + GFF812 0.47 -2.8 801,425 + GFF812 0.47 -1.3 801,433 - GFF812 0.48 +0.9 801,507 + GFF812 0.56 -1.3 801,521 - GFF812 0.58 +0.8 801,573 + GFF812 0.63 -1.2 801,618 - GFF812 0.68 -0.8 801,624 - GFF812 0.69 +0.4 801,755 + GFF812 0.83 -0.4 801,768 + GFF812 0.84 +0.6 801,848 + +0.5 801,856 + +0.1 801,864 - +1.0 801,869 - -1.4 801,869 - +0.0 801,874 - -0.0 801,881 - +0.2 801,940 + +1.4 801,980 + GFF813 0.15 +1.0 801,985 + GFF813 0.17 +0.4 802,047 + GFF813 0.51 +0.3 802,047 + GFF813 0.51 -0.6 802,091 - GFF813 0.75 +0.7 802,095 + GFF813 0.78 +0.5 802,095 + GFF813 0.78 -0.2 802,095 + GFF813 0.78 -0.6 802,095 + GFF813 0.78 -0.6 802,095 + GFF813 0.78 +0.3 802,095 + GFF813 0.78 -0.2 802,095 + GFF813 0.78 -1.3 802,095 + GFF813 0.78 +0.1 802,095 + GFF813 0.78 -0.1 802,103 - GFF813 0.82 +1.1 802,103 - GFF813 0.82 -1.6 802,126 + +0.6 802,138 + +1.0 802,146 - -1.2 802,167 + -1.3 802,182 + -1.5 802,192 + -2.2 802,192 + -2.1 802,201 - -0.5 802,205 - -2.2 802,209 - -1.6 802,217 + -2.3 802,225 - -2.1 802,265 - -2.6 802,277 - GFF814 0.11 +0.3 802,302 - GFF814 0.12 -2.8 802,313 - GFF814 0.13 -2.0 802,334 + GFF814 0.15 -3.1 802,334 + GFF814 0.15 -0.8 802,340 + GFF814 0.15 -1.3 802,340 + GFF814 0.15 -0.3 802,342 - GFF814 0.16 -2.2 802,342 - GFF814 0.16 -2.5 802,342 - GFF814 0.16 -2.1 802,342 - GFF814 0.16 -0.1 802,342 - GFF814 0.16 -0.6 802,342 - GFF814 0.16 -2.4 802,342 - GFF814 0.16 -1.8 802,348 - GFF814 0.16 -2.2 802,348 - GFF814 0.16 -3.2 802,375 + GFF814 0.18 -2.3 802,377 - GFF814 0.18 -0.1 802,416 + GFF814 0.21 -1.9 802,416 + GFF814 0.21 -0.8 802,430 + GFF814 0.22 -2.9 802,439 + GFF814 0.23 -0.1 802,442 - GFF814 0.23 -2.0 802,442 - GFF814 0.23 -0.6 802,452 - GFF814 0.24 -2.3 802,457 - GFF814 0.24 -2.6 802,462 - GFF814 0.25 -0.8 802,497 - GFF814 0.28 -0.1 802,497 - GFF814 0.28 -2.0 802,497 - GFF814 0.28 -2.8 802,497 - GFF814 0.28 -1.7 802,508 - GFF814 0.28 -2.3 802,603 - GFF814 0.36 -0.9 802,624 + GFF814 0.37 -0.8 802,624 + GFF814 0.37 -2.2 802,625 + GFF814 0.38 -0.3 802,625 + GFF814 0.38 +0.5 802,625 + GFF814 0.38 -3.2 802,625 + GFF814 0.38 -1.9 802,625 + GFF814 0.38 -2.4 802,625 + GFF814 0.38 -3.1 802,625 + GFF814 0.38 -3.2 802,633 - GFF814 0.38 -3.1 802,633 - GFF814 0.38 -0.9 802,639 - GFF814 0.39 -2.5 802,655 - GFF814 0.40 -1.4 802,661 + GFF814 0.40 -1.9 802,669 + GFF814 0.41 -2.0 802,674 + GFF814 0.41 -3.1 802,674 + GFF814 0.41 -2.4 802,676 - GFF814 0.41 -3.1 802,682 - GFF814 0.42 +0.2 802,682 - GFF814 0.42 -1.6 802,684 + GFF814 0.42 -3.4 802,694 + GFF814 0.43 +0.5 802,694 + GFF814 0.43 -1.1 802,706 + GFF814 0.44 -1.3 802,714 - GFF814 0.44 -2.6 802,714 - GFF814 0.44 -1.9 802,745 + GFF814 0.47 -1.6 802,754 + GFF814 0.48 -1.9 802,769 + GFF814 0.49 -0.8 802,777 - GFF814 0.49 -2.2 802,777 - GFF814 0.49 -1.9 802,777 - GFF814 0.49 -2.5 802,777 - GFF814 0.49 -1.8 802,777 - GFF814 0.49 -2.2 802,779 + GFF814 0.49 -1.6 802,779 - GFF814 0.49 -3.1 802,783 - GFF814 0.50 -0.6 802,812 + GFF814 0.52 -2.5 802,817 + GFF814 0.52 -2.1 802,820 - GFF814 0.53 -1.5 802,825 - GFF814 0.53 -2.0 802,835 - GFF814 0.54 -1.9 802,835 - GFF814 0.54 -2.1 802,837 + GFF814 0.54 -2.2 802,845 - GFF814 0.55 -2.1 802,845 - GFF814 0.55 -0.3 802,868 - GFF814 0.56 -0.9 802,871 + GFF814 0.57 -0.6 802,871 + GFF814 0.57 -2.3 802,879 - GFF814 0.57 -0.5 802,879 - GFF814 0.57 -1.9 802,891 + GFF814 0.58 -3.9
Or see this region's nucleotide sequence