Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF793 and GFF794 overlap by 1 nucleotides GFF794 and GFF795 are separated by 443 nucleotides GFF795 and GFF796 are separated by 2 nucleotides
GFF793 - Mobile element protein, at 781,835 to 782,539
GFF793
GFF794 - Insertion element IS401 (Burkholderia multivorans) transposase, at 782,539 to 782,862
GFF794
GFF795 - RcnR-like protein clustered with cobalt-zinc-cadmium resistance protein CzcD, at 783,306 to 783,578
GFF795
GFF796 - Cobalt/zinc/cadmium resistance protein CzcD, at 783,581 to 784,597
GFF796
Position (kb) 783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 782.312 kb on - strand, within GFF793 at 782.321 kb on + strand, within GFF793 at 782.329 kb on - strand, within GFF793 at 782.329 kb on - strand, within GFF793 at 782.330 kb on - strand, within GFF793 at 782.347 kb on + strand, within GFF793 at 782.348 kb on - strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.370 kb on + strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.378 kb on - strand, within GFF793 at 782.387 kb on + strand, within GFF793 at 782.388 kb on - strand, within GFF793 at 782.388 kb on - strand, within GFF793 at 782.388 kb on - strand, within GFF793 at 782.400 kb on - strand, within GFF793 at 782.400 kb on - strand, within GFF793 at 782.409 kb on + strand, within GFF793 at 782.415 kb on - strand, within GFF793 at 782.431 kb on - strand, within GFF793 at 782.449 kb on + strand, within GFF793 at 782.452 kb on - strand, within GFF793 at 782.457 kb on - strand, within GFF793 at 782.479 kb on + strand at 782.479 kb on + strand at 782.479 kb on + strand at 782.479 kb on + strand at 782.487 kb on - strand at 782.487 kb on - strand at 782.487 kb on - strand at 782.499 kb on + strand at 782.499 kb on + strand at 782.499 kb on + strand at 782.499 kb on + strand at 782.501 kb on + strand at 782.507 kb on - strand at 782.509 kb on - strand at 782.509 kb on - strand at 782.509 kb on - strand at 782.509 kb on - strand at 782.509 kb on - strand at 782.514 kb on - strand at 782.558 kb on + strand at 782.561 kb on - strand at 782.568 kb on + strand at 782.593 kb on - strand, within GFF794 at 782.595 kb on + strand, within GFF794 at 782.595 kb on + strand, within GFF794 at 782.603 kb on - strand, within GFF794 at 782.603 kb on - strand, within GFF794 at 782.616 kb on + strand, within GFF794 at 782.619 kb on - strand, within GFF794 at 782.625 kb on - strand, within GFF794 at 782.627 kb on - strand, within GFF794 at 782.632 kb on + strand, within GFF794 at 782.656 kb on + strand, within GFF794 at 782.664 kb on - strand, within GFF794 at 782.678 kb on - strand, within GFF794 at 782.692 kb on + strand, within GFF794 at 782.692 kb on + strand, within GFF794 at 782.700 kb on - strand, within GFF794 at 782.700 kb on - strand, within GFF794 at 782.705 kb on - strand, within GFF794 at 782.711 kb on - strand, within GFF794 at 782.735 kb on + strand, within GFF794 at 782.766 kb on - strand, within GFF794 at 782.779 kb on + strand, within GFF794 at 782.779 kb on + strand, within GFF794 at 782.779 kb on + strand, within GFF794 at 782.784 kb on + strand, within GFF794 at 782.787 kb on - strand, within GFF794 at 782.787 kb on - strand, within GFF794 at 782.789 kb on + strand, within GFF794 at 782.797 kb on - strand, within GFF794 at 782.821 kb on + strand, within GFF794 at 782.842 kb on - strand at 782.919 kb on - strand at 782.920 kb on + strand at 782.920 kb on + strand at 782.922 kb on + strand at 782.924 kb on - strand at 782.928 kb on - strand at 782.930 kb on - strand at 782.930 kb on - strand at 782.930 kb on - strand at 782.930 kb on - strand at 782.930 kb on - strand at 782.941 kb on + strand at 782.948 kb on - strand at 782.948 kb on - strand at 782.970 kb on - strand at 782.972 kb on + strand at 782.980 kb on - strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.982 kb on + strand at 782.987 kb on + strand at 782.987 kb on + strand at 782.987 kb on + strand at 782.990 kb on - strand at 782.990 kb on - strand at 782.990 kb on - strand at 782.990 kb on - strand at 782.990 kb on - strand at 782.992 kb on + strand at 782.995 kb on - strand at 782.995 kb on - strand at 783.000 kb on - strand at 783.005 kb on + strand at 783.005 kb on - strand at 783.013 kb on - strand at 783.023 kb on - strand at 783.042 kb on + strand at 783.052 kb on + strand at 783.079 kb on + strand at 783.092 kb on - strand at 783.114 kb on + strand at 783.115 kb on + strand at 783.122 kb on - strand at 783.122 kb on - strand at 783.123 kb on - strand at 783.125 kb on + strand at 783.158 kb on + strand at 783.171 kb on - strand at 783.183 kb on - strand at 783.202 kb on + strand at 783.259 kb on + strand at 783.259 kb on + strand at 783.260 kb on + strand at 783.268 kb on - strand at 783.277 kb on - strand at 783.289 kb on + strand at 783.304 kb on - strand at 783.314 kb on - strand at 783.355 kb on + strand, within GFF795 at 783.363 kb on - strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.365 kb on + strand, within GFF795 at 783.368 kb on - strand, within GFF795 at 783.373 kb on - strand, within GFF795 at 783.373 kb on - strand, within GFF795 at 783.373 kb on - strand, within GFF795 at 783.373 kb on - strand, within GFF795 at 783.373 kb on - strand, within GFF795 at 783.373 kb on - strand, within GFF795 at 783.373 kb on - strand, within GFF795 at 783.373 kb on - strand, within GFF795 at 783.396 kb on + strand, within GFF795 at 783.414 kb on - strand, within GFF795 at 783.433 kb on - strand, within GFF795 at 783.479 kb on + strand, within GFF795 at 783.492 kb on + strand, within GFF795 at 783.500 kb on - strand, within GFF795 at 783.502 kb on + strand, within GFF795 at 783.502 kb on + strand, within GFF795 at 783.507 kb on + strand, within GFF795 at 783.510 kb on - strand, within GFF795 at 783.510 kb on - strand, within GFF795 at 783.555 kb on - strand at 783.565 kb on - strand at 783.590 kb on + strand at 783.597 kb on + strand at 783.598 kb on - strand at 783.599 kb on + strand at 783.607 kb on - strand at 783.607 kb on - strand at 783.608 kb on + strand at 783.644 kb on - strand at 783.713 kb on + strand, within GFF796 at 783.736 kb on - strand, within GFF796 at 783.747 kb on + strand, within GFF796 at 783.753 kb on + strand, within GFF796 at 783.755 kb on - strand, within GFF796 at 783.755 kb on - strand, within GFF796 at 783.764 kb on + strand, within GFF796 at 783.843 kb on + strand, within GFF796 at 783.890 kb on + strand, within GFF796 at 783.890 kb on + strand, within GFF796 at 783.898 kb on - strand, within GFF796 at 783.915 kb on + strand, within GFF796 at 783.923 kb on - strand, within GFF796 at 783.923 kb on - strand, within GFF796 at 783.925 kb on + strand, within GFF796 at 783.925 kb on + strand, within GFF796 at 783.932 kb on + strand, within GFF796 at 783.933 kb on - strand, within GFF796 at 783.940 kb on - strand, within GFF796 at 783.949 kb on + strand, within GFF796 at 783.951 kb on - strand, within GFF796 at 783.965 kb on + strand, within GFF796 at 783.969 kb on - strand, within GFF796 at 783.969 kb on - strand, within GFF796 at 783.972 kb on + strand, within GFF796 at 783.996 kb on - strand, within GFF796 at 784.001 kb on - strand, within GFF796 at 784.003 kb on + strand, within GFF796 at 784.023 kb on + strand, within GFF796 at 784.033 kb on + strand, within GFF796 at 784.055 kb on - strand, within GFF796 at 784.061 kb on - strand, within GFF796 at 784.061 kb on - strand, within GFF796 at 784.067 kb on + strand, within GFF796 at 784.097 kb on + strand, within GFF796 at 784.102 kb on + strand, within GFF796 at 784.107 kb on + strand, within GFF796 at 784.110 kb on - strand, within GFF796 at 784.110 kb on - strand, within GFF796 at 784.130 kb on - strand, within GFF796 at 784.145 kb on + strand, within GFF796 at 784.154 kb on - strand, within GFF796 at 784.155 kb on - strand, within GFF796 at 784.160 kb on + strand, within GFF796 at 784.168 kb on - strand, within GFF796 at 784.175 kb on + strand, within GFF796 at 784.191 kb on + strand, within GFF796 at 784.196 kb on + strand, within GFF796 at 784.215 kb on + strand, within GFF796 at 784.217 kb on + strand, within GFF796 at 784.217 kb on + strand, within GFF796 at 784.221 kb on + strand, within GFF796 at 784.223 kb on - strand, within GFF796 at 784.225 kb on - strand, within GFF796 at 784.225 kb on - strand, within GFF796 at 784.228 kb on + strand, within GFF796 at 784.229 kb on + strand, within GFF796 at 784.229 kb on + strand, within GFF796 at 784.229 kb on + strand, within GFF796 at 784.229 kb on + strand, within GFF796 at 784.229 kb on - strand, within GFF796 at 784.249 kb on - strand, within GFF796 at 784.261 kb on - strand, within GFF796 at 784.372 kb on - strand, within GFF796 at 784.377 kb on - strand, within GFF796 at 784.393 kb on - strand, within GFF796 at 784.432 kb on + strand, within GFF796 at 784.447 kb on - strand, within GFF796 at 784.469 kb on - strand, within GFF796 at 784.470 kb on - strand, within GFF796 at 784.491 kb on + strand, within GFF796 at 784.499 kb on - strand at 784.504 kb on + strand at 784.512 kb on - strand at 784.530 kb on + strand at 784.534 kb on - strand at 784.538 kb on - strand at 784.538 kb on - strand at 784.542 kb on + strand at 784.571 kb on + strand at 784.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 782,312 - GFF793 0.68 +1.0 782,321 + GFF793 0.69 +0.7 782,329 - GFF793 0.70 -0.7 782,329 - GFF793 0.70 -1.4 782,330 - GFF793 0.70 +0.6 782,347 + GFF793 0.73 -2.2 782,348 - GFF793 0.73 +0.8 782,370 + GFF793 0.76 +0.3 782,370 + GFF793 0.76 -0.1 782,370 + GFF793 0.76 +0.6 782,370 + GFF793 0.76 -0.8 782,370 + GFF793 0.76 -0.4 782,370 + GFF793 0.76 +0.5 782,370 + GFF793 0.76 -0.2 782,370 + GFF793 0.76 +0.5 782,370 + GFF793 0.76 -0.5 782,370 + GFF793 0.76 +0.2 782,370 + GFF793 0.76 -0.4 782,370 + GFF793 0.76 +0.5 782,370 + GFF793 0.76 -2.3 782,370 + GFF793 0.76 +1.4 782,370 + GFF793 0.76 -0.4 782,370 + GFF793 0.76 -0.6 782,370 + GFF793 0.76 +0.4 782,370 + GFF793 0.76 -0.3 782,378 - GFF793 0.77 +0.5 782,378 - GFF793 0.77 +0.1 782,378 - GFF793 0.77 -1.1 782,378 - GFF793 0.77 +0.3 782,378 - GFF793 0.77 -0.1 782,378 - GFF793 0.77 -1.7 782,378 - GFF793 0.77 -0.8 782,378 - GFF793 0.77 -0.6 782,378 - GFF793 0.77 -0.4 782,378 - GFF793 0.77 -1.2 782,378 - GFF793 0.77 -0.5 782,387 + GFF793 0.78 -1.9 782,388 - GFF793 0.78 -0.2 782,388 - GFF793 0.78 +0.1 782,388 - GFF793 0.78 -0.2 782,400 - GFF793 0.80 +0.8 782,400 - GFF793 0.80 -0.3 782,409 + GFF793 0.81 -1.3 782,415 - GFF793 0.82 -1.9 782,431 - GFF793 0.85 +0.1 782,449 + GFF793 0.87 -1.0 782,452 - GFF793 0.88 -0.7 782,457 - GFF793 0.88 +0.2 782,479 + -0.6 782,479 + +0.5 782,479 + -0.2 782,479 + +0.9 782,487 - +0.3 782,487 - -0.5 782,487 - +0.2 782,499 + -1.1 782,499 + +0.4 782,499 + -1.7 782,499 + -0.7 782,501 + -0.8 782,507 - -0.5 782,509 - +0.2 782,509 - +1.2 782,509 - +1.2 782,509 - -1.7 782,509 - -1.0 782,514 - -0.5 782,558 + +0.5 782,561 - -0.2 782,568 + -1.2 782,593 - GFF794 0.17 -0.2 782,595 + GFF794 0.17 -1.5 782,595 + GFF794 0.17 +0.4 782,603 - GFF794 0.20 -1.0 782,603 - GFF794 0.20 -0.1 782,616 + GFF794 0.24 -0.8 782,619 - GFF794 0.25 +1.2 782,625 - GFF794 0.27 -1.6 782,627 - GFF794 0.27 +0.8 782,632 + GFF794 0.29 +0.3 782,656 + GFF794 0.36 -0.2 782,664 - GFF794 0.39 +1.0 782,678 - GFF794 0.43 -1.7 782,692 + GFF794 0.47 +0.5 782,692 + GFF794 0.47 -0.6 782,700 - GFF794 0.50 -0.5 782,700 - GFF794 0.50 +0.2 782,705 - GFF794 0.51 +1.4 782,711 - GFF794 0.53 +0.3 782,735 + GFF794 0.60 -0.5 782,766 - GFF794 0.70 -0.1 782,779 + GFF794 0.74 -0.1 782,779 + GFF794 0.74 +1.2 782,779 + GFF794 0.74 -0.1 782,784 + GFF794 0.76 -1.1 782,787 - GFF794 0.77 +0.2 782,787 - GFF794 0.77 +0.7 782,789 + GFF794 0.77 -1.5 782,797 - GFF794 0.80 -0.1 782,821 + GFF794 0.87 -0.2 782,842 - +0.8 782,919 - -0.1 782,920 + +0.7 782,920 + +0.2 782,922 + -2.3 782,924 - -0.8 782,928 - -1.1 782,930 - -0.1 782,930 - +0.2 782,930 - -2.0 782,930 - -1.7 782,930 - -1.0 782,941 + -1.4 782,948 - +0.8 782,948 - -0.2 782,970 - +0.0 782,972 + +0.8 782,980 - +1.1 782,982 + +0.7 782,982 + +0.5 782,982 + -1.0 782,982 + -0.4 782,982 + +1.1 782,982 + -0.3 782,982 + -0.4 782,982 + +1.2 782,982 + -1.4 782,982 + -3.3 782,982 + -1.8 782,982 + -0.5 782,982 + +1.9 782,982 + +0.3 782,982 + +0.5 782,987 + -1.1 782,987 + -0.1 782,987 + -0.2 782,990 - -0.2 782,990 - -1.1 782,990 - -0.4 782,990 - -0.3 782,990 - -1.1 782,992 + -1.9 782,995 - -0.1 782,995 - +0.4 783,000 - -0.2 783,005 + -1.0 783,005 - +0.4 783,013 - +0.1 783,023 - -0.9 783,042 + -2.2 783,052 + -0.6 783,079 + -0.5 783,092 - +1.1 783,114 + +0.0 783,115 + -1.5 783,122 - +0.6 783,122 - +0.7 783,123 - -0.0 783,125 + +1.2 783,158 + +0.5 783,171 - +1.0 783,183 - -1.3 783,202 + +0.4 783,259 + -0.3 783,259 + +1.1 783,260 + +0.5 783,268 - -0.4 783,277 - -0.6 783,289 + -0.4 783,304 - -1.8 783,314 - -0.1 783,355 + GFF795 0.18 -0.2 783,363 - GFF795 0.21 -0.3 783,365 + GFF795 0.22 -0.8 783,365 + GFF795 0.22 -1.8 783,365 + GFF795 0.22 +0.4 783,365 + GFF795 0.22 +0.0 783,365 + GFF795 0.22 -0.8 783,365 + GFF795 0.22 -1.2 783,365 + GFF795 0.22 +0.1 783,365 + GFF795 0.22 +0.5 783,365 + GFF795 0.22 -1.2 783,368 - GFF795 0.23 -0.3 783,373 - GFF795 0.25 +1.4 783,373 - GFF795 0.25 -1.5 783,373 - GFF795 0.25 -1.1 783,373 - GFF795 0.25 -0.8 783,373 - GFF795 0.25 -1.6 783,373 - GFF795 0.25 -0.7 783,373 - GFF795 0.25 -0.3 783,373 - GFF795 0.25 +0.4 783,396 + GFF795 0.33 -1.1 783,414 - GFF795 0.40 -0.4 783,433 - GFF795 0.47 +0.9 783,479 + GFF795 0.63 +0.2 783,492 + GFF795 0.68 -1.2 783,500 - GFF795 0.71 +0.5 783,502 + GFF795 0.72 -1.0 783,502 + GFF795 0.72 -0.1 783,507 + GFF795 0.74 -0.8 783,510 - GFF795 0.75 +0.9 783,510 - GFF795 0.75 -1.4 783,555 - -0.6 783,565 - -1.1 783,590 + +0.2 783,597 + -1.5 783,598 - +1.4 783,599 + -0.5 783,607 - -0.5 783,607 - +0.9 783,608 + -0.9 783,644 - -0.2 783,713 + GFF796 0.13 +0.7 783,736 - GFF796 0.15 -0.0 783,747 + GFF796 0.16 -0.3 783,753 + GFF796 0.17 +0.6 783,755 - GFF796 0.17 -0.4 783,755 - GFF796 0.17 -2.5 783,764 + GFF796 0.18 +0.2 783,843 + GFF796 0.26 +0.6 783,890 + GFF796 0.30 +0.4 783,890 + GFF796 0.30 +0.3 783,898 - GFF796 0.31 -1.8 783,915 + GFF796 0.33 +0.4 783,923 - GFF796 0.34 -0.9 783,923 - GFF796 0.34 -0.2 783,925 + GFF796 0.34 -0.3 783,925 + GFF796 0.34 -0.4 783,932 + GFF796 0.35 -0.4 783,933 - GFF796 0.35 -0.3 783,940 - GFF796 0.35 -0.7 783,949 + GFF796 0.36 -1.7 783,951 - GFF796 0.36 -2.3 783,965 + GFF796 0.38 -0.9 783,969 - GFF796 0.38 +0.8 783,969 - GFF796 0.38 -3.1 783,972 + GFF796 0.38 -0.7 783,996 - GFF796 0.41 -0.5 784,001 - GFF796 0.41 -1.2 784,003 + GFF796 0.41 +0.0 784,023 + GFF796 0.43 -0.5 784,033 + GFF796 0.44 -1.5 784,055 - GFF796 0.47 +0.3 784,061 - GFF796 0.47 -1.5 784,061 - GFF796 0.47 -0.3 784,067 + GFF796 0.48 -0.4 784,097 + GFF796 0.51 +1.9 784,102 + GFF796 0.51 -0.5 784,107 + GFF796 0.52 -0.4 784,110 - GFF796 0.52 -0.1 784,110 - GFF796 0.52 +0.4 784,130 - GFF796 0.54 -0.1 784,145 + GFF796 0.55 -1.0 784,154 - GFF796 0.56 +0.4 784,155 - GFF796 0.56 -1.1 784,160 + GFF796 0.57 -0.6 784,168 - GFF796 0.58 -1.7 784,175 + GFF796 0.58 +0.7 784,191 + GFF796 0.60 +0.1 784,196 + GFF796 0.60 -1.5 784,215 + GFF796 0.62 -0.4 784,217 + GFF796 0.63 -0.5 784,217 + GFF796 0.63 -0.5 784,221 + GFF796 0.63 -0.0 784,223 - GFF796 0.63 -1.1 784,225 - GFF796 0.63 +0.9 784,225 - GFF796 0.63 +0.2 784,228 + GFF796 0.64 -0.7 784,229 + GFF796 0.64 +0.0 784,229 + GFF796 0.64 -1.0 784,229 + GFF796 0.64 +0.7 784,229 + GFF796 0.64 -0.9 784,229 - GFF796 0.64 -1.3 784,249 - GFF796 0.66 +0.3 784,261 - GFF796 0.67 -0.3 784,372 - GFF796 0.78 +0.5 784,377 - GFF796 0.78 +1.1 784,393 - GFF796 0.80 -1.0 784,432 + GFF796 0.84 -1.4 784,447 - GFF796 0.85 +0.9 784,469 - GFF796 0.87 +0.5 784,470 - GFF796 0.87 +1.6 784,491 + GFF796 0.89 -1.4 784,499 - -0.6 784,504 + -0.5 784,512 - -0.4 784,530 + +0.1 784,534 - -0.4 784,538 - -2.2 784,538 - -0.4 784,542 + -0.3 784,571 + +0.1 784,571 + -0.3
Or see this region's nucleotide sequence