Strain Fitness in Sphingobium sp. HT1-2 around GFF786

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF785 and GFF786 are separated by 286 nucleotidesGFF786 and GFF787 are separated by 54 nucleotidesGFF787 and GFF788 are separated by 31 nucleotides GFF785 - Ammonium transporter, at 773,473 to 774,819 GFF785 GFF786 - Phytoene synthase (EC 2.5.1.32), at 775,106 to 776,095 GFF786 GFF787 - Lysine decarboxylase family, at 776,150 to 776,731 GFF787 GFF788 - Phytoene desaturase (lycopene-forming) (EC 1.3.99.31), at 776,763 to 778,244 GFF788 Position (kb) 775 776 777Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 774.108 kb on - strand, within GFF785at 774.129 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.147 kb on + strand, within GFF785at 774.165 kb on + strand, within GFF785at 774.176 kb on + strand, within GFF785at 774.181 kb on + strand, within GFF785at 774.191 kb on + strand, within GFF785at 774.191 kb on + strand, within GFF785at 774.191 kb on + strand, within GFF785at 774.191 kb on + strand, within GFF785at 774.199 kb on - strand, within GFF785at 774.199 kb on - strand, within GFF785at 774.199 kb on - strand, within GFF785at 774.199 kb on - strand, within GFF785at 774.220 kb on + strand, within GFF785at 774.220 kb on - strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.225 kb on - strand, within GFF785at 774.227 kb on + strand, within GFF785at 774.230 kb on - strand, within GFF785at 774.230 kb on - strand, within GFF785at 774.230 kb on - strand, within GFF785at 774.261 kb on + strand, within GFF785at 774.295 kb on + strand, within GFF785at 774.295 kb on + strand, within GFF785at 774.302 kb on - strand, within GFF785at 774.302 kb on - strand, within GFF785at 774.303 kb on - strand, within GFF785at 774.330 kb on + strand, within GFF785at 774.330 kb on + strand, within GFF785at 774.330 kb on + strand, within GFF785at 774.332 kb on + strand, within GFF785at 774.338 kb on - strand, within GFF785at 774.338 kb on - strand, within GFF785at 774.338 kb on - strand, within GFF785at 774.340 kb on - strand, within GFF785at 774.351 kb on + strand, within GFF785at 774.373 kb on + strand, within GFF785at 774.381 kb on - strand, within GFF785at 774.386 kb on + strand, within GFF785at 774.504 kb on + strand, within GFF785at 774.509 kb on + strand, within GFF785at 774.510 kb on + strand, within GFF785at 774.541 kb on - strand, within GFF785at 774.541 kb on - strand, within GFF785at 774.542 kb on + strand, within GFF785at 774.579 kb on + strand, within GFF785at 774.602 kb on + strand, within GFF785at 774.607 kb on + strand, within GFF785at 774.610 kb on - strand, within GFF785at 774.644 kb on + strand, within GFF785at 774.644 kb on + strand, within GFF785at 774.657 kb on + strand, within GFF785at 774.673 kb on + strand, within GFF785at 774.685 kb on - strandat 774.694 kb on + strandat 774.695 kb on - strandat 774.726 kb on + strandat 774.732 kb on + strandat 774.740 kb on - strandat 774.740 kb on - strandat 774.740 kb on - strandat 774.762 kb on - strandat 774.783 kb on - strandat 774.783 kb on - strandat 774.790 kb on - strandat 774.813 kb on + strandat 774.813 kb on + strandat 774.821 kb on - strandat 774.866 kb on + strandat 774.869 kb on - strandat 774.902 kb on + strandat 774.932 kb on + strandat 774.958 kb on + strandat 774.971 kb on - strandat 774.974 kb on + strandat 774.982 kb on - strandat 774.983 kb on - strandat 775.018 kb on + strandat 775.018 kb on + strandat 775.026 kb on - strandat 775.036 kb on - strandat 775.036 kb on - strandat 775.113 kb on - strandat 775.130 kb on - strandat 775.130 kb on - strandat 775.137 kb on - strandat 775.149 kb on - strandat 775.154 kb on - strandat 775.154 kb on - strandat 775.172 kb on + strandat 775.180 kb on - strandat 775.189 kb on - strandat 775.200 kb on + strandat 775.213 kb on - strand, within GFF786at 775.213 kb on - strand, within GFF786at 775.248 kb on - strand, within GFF786at 775.312 kb on - strand, within GFF786at 775.314 kb on + strand, within GFF786at 775.349 kb on + strand, within GFF786at 775.488 kb on - strand, within GFF786at 775.509 kb on - strand, within GFF786at 775.535 kb on - strand, within GFF786at 775.556 kb on - strand, within GFF786at 775.568 kb on + strand, within GFF786at 775.576 kb on - strand, within GFF786at 775.578 kb on + strand, within GFF786at 775.586 kb on - strand, within GFF786at 775.596 kb on + strand, within GFF786at 775.622 kb on + strand, within GFF786at 775.671 kb on - strand, within GFF786at 775.678 kb on + strand, within GFF786at 775.718 kb on + strand, within GFF786at 775.723 kb on + strand, within GFF786at 775.725 kb on - strand, within GFF786at 775.733 kb on - strand, within GFF786at 775.741 kb on - strand, within GFF786at 775.762 kb on + strand, within GFF786at 775.823 kb on + strand, within GFF786at 775.883 kb on + strand, within GFF786at 775.883 kb on + strand, within GFF786at 775.886 kb on - strand, within GFF786at 775.891 kb on - strand, within GFF786at 775.891 kb on - strand, within GFF786at 775.891 kb on - strand, within GFF786at 775.922 kb on + strand, within GFF786at 775.923 kb on + strand, within GFF786at 775.931 kb on - strand, within GFF786at 775.931 kb on - strand, within GFF786at 775.932 kb on + strand, within GFF786at 775.986 kb on - strand, within GFF786at 776.057 kb on - strandat 776.120 kb on - strandat 776.120 kb on - strandat 776.120 kb on - strandat 776.120 kb on - strandat 776.120 kb on - strandat 776.120 kb on - strandat 776.120 kb on - strandat 776.121 kb on - strandat 776.121 kb on - strandat 776.125 kb on + strandat 776.148 kb on + strandat 776.165 kb on + strandat 776.183 kb on + strandat 776.278 kb on + strand, within GFF787at 776.328 kb on + strand, within GFF787at 776.328 kb on + strand, within GFF787at 776.336 kb on - strand, within GFF787at 776.354 kb on - strand, within GFF787at 776.354 kb on - strand, within GFF787at 776.354 kb on - strand, within GFF787at 776.456 kb on - strand, within GFF787at 776.467 kb on + strand, within GFF787at 776.474 kb on + strand, within GFF787at 776.475 kb on - strand, within GFF787at 776.475 kb on - strand, within GFF787at 776.482 kb on - strand, within GFF787at 776.483 kb on - strand, within GFF787at 776.499 kb on - strand, within GFF787at 776.544 kb on + strand, within GFF787at 776.577 kb on + strand, within GFF787at 776.594 kb on + strand, within GFF787at 776.594 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.641 kb on + strand, within GFF787at 776.649 kb on - strand, within GFF787at 776.649 kb on - strand, within GFF787at 776.649 kb on - strand, within GFF787at 776.649 kb on - strand, within GFF787at 776.649 kb on - strand, within GFF787at 776.649 kb on - strand, within GFF787at 776.649 kb on - strand, within GFF787at 776.676 kb on + strandat 776.761 kb on + strandat 776.761 kb on + strandat 776.761 kb on + strandat 776.761 kb on + strandat 776.761 kb on + strandat 776.761 kb on + strandat 776.769 kb on - strandat 776.769 kb on - strandat 776.769 kb on - strandat 776.769 kb on - strandat 776.775 kb on - strandat 776.798 kb on + strandat 776.806 kb on - strandat 776.808 kb on + strandat 776.811 kb on - strandat 776.850 kb on - strandat 776.865 kb on - strandat 776.948 kb on + strand, within GFF788at 776.996 kb on + strand, within GFF788at 777.004 kb on - strand, within GFF788at 777.052 kb on - strand, within GFF788at 777.053 kb on - strand, within GFF788at 777.061 kb on + strand, within GFF788at 777.061 kb on + strand, within GFF788at 777.069 kb on - strand, within GFF788at 777.069 kb on - strand, within GFF788at 777.069 kb on - strand, within GFF788at 777.069 kb on - strand, within GFF788

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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774,108 - GFF785 0.47 -0.6
774,129 + GFF785 0.49 +0.4
774,137 + GFF785 0.49 -0.8
774,137 + GFF785 0.49 +0.5
774,137 + GFF785 0.49 +0.1
774,137 + GFF785 0.49 +0.4
774,137 + GFF785 0.49 +0.6
774,145 - GFF785 0.50 -0.2
774,145 - GFF785 0.50 -0.8
774,145 - GFF785 0.50 +0.5
774,145 - GFF785 0.50 +0.0
774,145 - GFF785 0.50 +0.2
774,145 - GFF785 0.50 +0.8
774,145 - GFF785 0.50 +1.3
774,145 - GFF785 0.50 -0.9
774,147 + GFF785 0.50 +0.4
774,165 + GFF785 0.51 -0.3
774,176 + GFF785 0.52 +0.3
774,181 + GFF785 0.53 +0.3
774,191 + GFF785 0.53 +0.6
774,191 + GFF785 0.53 -0.7
774,191 + GFF785 0.53 -1.3
774,191 + GFF785 0.53 -0.7
774,199 - GFF785 0.54 -0.6
774,199 - GFF785 0.54 -0.5
774,199 - GFF785 0.54 -0.3
774,199 - GFF785 0.54 +0.5
774,220 + GFF785 0.55 +0.1
774,220 - GFF785 0.55 -0.1
774,222 + GFF785 0.56 +0.8
774,222 + GFF785 0.56 +1.4
774,222 + GFF785 0.56 -1.2
774,222 + GFF785 0.56 +0.2
774,222 + GFF785 0.56 -0.1
774,222 + GFF785 0.56 -1.1
774,225 - GFF785 0.56 -1.8
774,227 + GFF785 0.56 +0.2
774,230 - GFF785 0.56 -0.6
774,230 - GFF785 0.56 -1.4
774,230 - GFF785 0.56 +0.2
774,261 + GFF785 0.59 +0.4
774,295 + GFF785 0.61 -1.3
774,295 + GFF785 0.61 +0.4
774,302 - GFF785 0.62 -0.2
774,302 - GFF785 0.62 +1.6
774,303 - GFF785 0.62 +0.7
774,330 + GFF785 0.64 -0.4
774,330 + GFF785 0.64 +0.6
774,330 + GFF785 0.64 +0.4
774,332 + GFF785 0.64 -0.9
774,338 - GFF785 0.64 -0.5
774,338 - GFF785 0.64 -0.3
774,338 - GFF785 0.64 -1.0
774,340 - GFF785 0.64 +0.0
774,351 + GFF785 0.65 -0.9
774,373 + GFF785 0.67 +1.3
774,381 - GFF785 0.67 +0.3
774,386 + GFF785 0.68 -0.4
774,504 + GFF785 0.77 +0.8
774,509 + GFF785 0.77 -0.4
774,510 + GFF785 0.77 -0.5
774,541 - GFF785 0.79 -0.2
774,541 - GFF785 0.79 +0.9
774,542 + GFF785 0.79 -0.8
774,579 + GFF785 0.82 +0.8
774,602 + GFF785 0.84 -1.1
774,607 + GFF785 0.84 -0.4
774,610 - GFF785 0.84 +0.5
774,644 + GFF785 0.87 +0.3
774,644 + GFF785 0.87 -0.7
774,657 + GFF785 0.88 -0.3
774,673 + GFF785 0.89 -1.1
774,685 - +0.2
774,694 + -0.8
774,695 - +0.8
774,726 + +1.0
774,732 + -1.2
774,740 - +0.0
774,740 - -0.2
774,740 - -0.7
774,762 - +0.2
774,783 - +0.1
774,783 - -0.3
774,790 - -0.6
774,813 + +0.8
774,813 + +0.5
774,821 - +0.0
774,866 + -0.2
774,869 - -0.1
774,902 + -1.3
774,932 + -0.0
774,958 + -0.7
774,971 - +0.2
774,974 + +0.8
774,982 - -1.0
774,983 - -0.8
775,018 + +0.3
775,018 + +0.6
775,026 - +0.4
775,036 - +1.1
775,036 - +1.0
775,113 - -0.7
775,130 - +0.6
775,130 - +0.4
775,137 - +1.8
775,149 - +0.3
775,154 - +0.1
775,154 - +0.6
775,172 + +0.7
775,180 - +0.4
775,189 - +0.5
775,200 + +0.2
775,213 - GFF786 0.11 -0.3
775,213 - GFF786 0.11 +2.1
775,248 - GFF786 0.14 +0.3
775,312 - GFF786 0.21 -1.4
775,314 + GFF786 0.21 -1.1
775,349 + GFF786 0.25 +0.9
775,488 - GFF786 0.39 -0.3
775,509 - GFF786 0.41 +0.3
775,535 - GFF786 0.43 -1.7
775,556 - GFF786 0.45 -0.2
775,568 + GFF786 0.47 -0.3
775,576 - GFF786 0.47 -0.2
775,578 + GFF786 0.48 -2.0
775,586 - GFF786 0.48 +0.5
775,596 + GFF786 0.49 +0.5
775,622 + GFF786 0.52 -0.1
775,671 - GFF786 0.57 +0.5
775,678 + GFF786 0.58 +0.3
775,718 + GFF786 0.62 -0.8
775,723 + GFF786 0.62 -0.4
775,725 - GFF786 0.63 -0.4
775,733 - GFF786 0.63 -0.9
775,741 - GFF786 0.64 +0.1
775,762 + GFF786 0.66 -0.1
775,823 + GFF786 0.72 -0.4
775,883 + GFF786 0.78 +1.7
775,883 + GFF786 0.78 +1.6
775,886 - GFF786 0.79 -1.6
775,891 - GFF786 0.79 -0.1
775,891 - GFF786 0.79 +0.8
775,891 - GFF786 0.79 -0.5
775,922 + GFF786 0.82 -0.3
775,923 + GFF786 0.83 -0.2
775,931 - GFF786 0.83 +1.5
775,931 - GFF786 0.83 +0.2
775,932 + GFF786 0.83 +1.1
775,986 - GFF786 0.89 +0.9
776,057 - +0.3
776,120 - +0.1
776,120 - +0.3
776,120 - +0.3
776,120 - +2.0
776,120 - -0.4
776,120 - +1.3
776,120 - +1.7
776,121 - +1.1
776,121 - +0.3
776,125 + +0.5
776,148 + +0.6
776,165 + +1.5
776,183 + -0.2
776,278 + GFF787 0.22 +0.9
776,328 + GFF787 0.31 -0.9
776,328 + GFF787 0.31 -0.5
776,336 - GFF787 0.32 +0.0
776,354 - GFF787 0.35 +1.6
776,354 - GFF787 0.35 -0.8
776,354 - GFF787 0.35 -0.2
776,456 - GFF787 0.53 +0.8
776,467 + GFF787 0.54 -2.8
776,474 + GFF787 0.56 -0.9
776,475 - GFF787 0.56 +1.0
776,475 - GFF787 0.56 -0.6
776,482 - GFF787 0.57 +1.5
776,483 - GFF787 0.57 +1.0
776,499 - GFF787 0.60 +0.2
776,544 + GFF787 0.68 -0.5
776,577 + GFF787 0.73 -0.1
776,594 + GFF787 0.76 -0.2
776,594 + GFF787 0.76 -0.1
776,641 + GFF787 0.84 -1.1
776,641 + GFF787 0.84 +0.0
776,641 + GFF787 0.84 +0.4
776,641 + GFF787 0.84 +0.1
776,641 + GFF787 0.84 -0.1
776,641 + GFF787 0.84 -0.7
776,641 + GFF787 0.84 -1.0
776,641 + GFF787 0.84 +0.3
776,641 + GFF787 0.84 -1.2
776,641 + GFF787 0.84 +0.1
776,641 + GFF787 0.84 -0.5
776,641 + GFF787 0.84 +0.3
776,641 + GFF787 0.84 -0.3
776,641 + GFF787 0.84 -1.7
776,641 + GFF787 0.84 +0.3
776,649 - GFF787 0.86 +0.0
776,649 - GFF787 0.86 -1.6
776,649 - GFF787 0.86 -0.4
776,649 - GFF787 0.86 +0.3
776,649 - GFF787 0.86 -0.5
776,649 - GFF787 0.86 +0.1
776,649 - GFF787 0.86 +1.6
776,676 + -0.7
776,761 + -0.0
776,761 + +0.7
776,761 + -0.8
776,761 + +1.8
776,761 + -0.5
776,761 + +0.2
776,769 - +2.5
776,769 - -1.2
776,769 - -0.1
776,769 - -1.1
776,775 - -1.3
776,798 + -1.5
776,806 - +0.3
776,808 + +1.9
776,811 - -0.0
776,850 - -0.6
776,865 - -0.3
776,948 + GFF788 0.12 +0.6
776,996 + GFF788 0.16 +0.1
777,004 - GFF788 0.16 +0.7
777,052 - GFF788 0.20 +0.9
777,053 - GFF788 0.20 -0.5
777,061 + GFF788 0.20 +1.3
777,061 + GFF788 0.20 -0.2
777,069 - GFF788 0.21 -0.4
777,069 - GFF788 0.21 +0.0
777,069 - GFF788 0.21 +0.1
777,069 - GFF788 0.21 -0.4

Or see this region's nucleotide sequence