Strain Fitness in Sphingobium sp. HT1-2 around GFF645

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF644 and GFF645 are separated by 141 nucleotidesGFF645 and GFF646 are separated by 143 nucleotides GFF644 - hypothetical protein, at 641,955 to 642,818 GFF644 GFF645 - Polyhydroxyalkanoic acid synthase, at 642,960 to 644,699 GFF645 GFF646 - Aspartate aminotransferase (EC 2.6.1.1), at 644,843 to 646,054 GFF646 Position (kb) 642 643 644 645Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 642.405 kb on - strand, within GFF644at 642.515 kb on + strand, within GFF644at 642.528 kb on + strand, within GFF644at 642.528 kb on - strand, within GFF644at 642.664 kb on + strand, within GFF644at 642.723 kb on + strand, within GFF644at 642.799 kb on + strandat 642.799 kb on + strandat 642.807 kb on - strandat 642.807 kb on - strandat 642.807 kb on - strandat 642.814 kb on - strandat 642.858 kb on + strandat 642.879 kb on + strandat 642.885 kb on - strandat 642.887 kb on - strandat 642.887 kb on - strandat 642.922 kb on + strandat 642.944 kb on + strandat 642.944 kb on + strandat 642.944 kb on + strandat 642.944 kb on + strandat 642.968 kb on - strandat 643.055 kb on + strandat 643.055 kb on + strandat 643.055 kb on + strandat 643.055 kb on + strandat 643.063 kb on - strandat 643.063 kb on - strandat 643.073 kb on - strandat 643.093 kb on + strandat 643.129 kb on - strandat 643.159 kb on + strand, within GFF645at 643.211 kb on + strand, within GFF645at 643.212 kb on + strand, within GFF645at 643.219 kb on + strand, within GFF645at 643.230 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.281 kb on - strand, within GFF645at 643.281 kb on - strand, within GFF645at 643.288 kb on + strand, within GFF645at 643.305 kb on + strand, within GFF645at 643.308 kb on - strand, within GFF645at 643.310 kb on + strand, within GFF645at 643.332 kb on - strand, within GFF645at 643.334 kb on + strand, within GFF645at 643.365 kb on + strand, within GFF645at 643.385 kb on + strand, within GFF645at 643.396 kb on + strand, within GFF645at 643.401 kb on + strand, within GFF645at 643.404 kb on - strand, within GFF645at 643.404 kb on - strand, within GFF645at 643.406 kb on + strand, within GFF645at 643.414 kb on - strand, within GFF645at 643.416 kb on + strand, within GFF645at 643.426 kb on - strand, within GFF645at 643.453 kb on + strand, within GFF645at 643.477 kb on - strand, within GFF645at 643.487 kb on - strand, within GFF645at 643.529 kb on + strand, within GFF645at 643.547 kb on + strand, within GFF645at 643.548 kb on + strand, within GFF645at 643.548 kb on + strand, within GFF645at 643.554 kb on - strand, within GFF645at 643.556 kb on - strand, within GFF645at 643.556 kb on - strand, within GFF645at 643.556 kb on - strand, within GFF645at 643.562 kb on - strand, within GFF645at 643.562 kb on - strand, within GFF645at 643.565 kb on + strand, within GFF645at 643.567 kb on - strand, within GFF645at 643.569 kb on - strand, within GFF645at 643.569 kb on - strand, within GFF645at 643.569 kb on - strand, within GFF645at 643.590 kb on + strand, within GFF645at 643.600 kb on - strand, within GFF645at 643.641 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.668 kb on - strand, within GFF645at 643.713 kb on - strand, within GFF645at 643.727 kb on + strand, within GFF645at 643.743 kb on - strand, within GFF645at 643.757 kb on + strand, within GFF645at 643.757 kb on + strand, within GFF645at 643.774 kb on + strand, within GFF645at 643.774 kb on + strand, within GFF645at 643.780 kb on + strand, within GFF645at 643.799 kb on - strand, within GFF645at 643.808 kb on - strand, within GFF645at 643.808 kb on - strand, within GFF645at 643.838 kb on + strand, within GFF645at 643.838 kb on + strand, within GFF645at 643.838 kb on + strand, within GFF645at 643.838 kb on + strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.848 kb on + strand, within GFF645at 643.855 kb on + strand, within GFF645at 643.855 kb on + strand, within GFF645at 643.857 kb on - strand, within GFF645at 643.857 kb on - strand, within GFF645at 643.900 kb on - strand, within GFF645at 643.914 kb on - strand, within GFF645at 643.938 kb on + strand, within GFF645at 643.939 kb on + strand, within GFF645at 643.946 kb on - strand, within GFF645at 643.946 kb on - strand, within GFF645at 643.963 kb on - strand, within GFF645at 643.980 kb on - strand, within GFF645at 644.007 kb on + strand, within GFF645at 644.008 kb on + strand, within GFF645at 644.023 kb on - strand, within GFF645at 644.044 kb on + strand, within GFF645at 644.071 kb on + strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.092 kb on + strand, within GFF645at 644.094 kb on + strand, within GFF645at 644.102 kb on - strand, within GFF645at 644.104 kb on + strand, within GFF645at 644.104 kb on + strand, within GFF645at 644.104 kb on + strand, within GFF645at 644.114 kb on + strand, within GFF645at 644.129 kb on + strand, within GFF645at 644.129 kb on + strand, within GFF645at 644.131 kb on - strand, within GFF645at 644.131 kb on - strand, within GFF645at 644.131 kb on - strand, within GFF645at 644.133 kb on - strand, within GFF645at 644.135 kb on + strand, within GFF645at 644.141 kb on - strand, within GFF645at 644.142 kb on - strand, within GFF645at 644.142 kb on - strand, within GFF645at 644.143 kb on - strand, within GFF645at 644.159 kb on + strand, within GFF645at 644.167 kb on - strand, within GFF645at 644.196 kb on + strand, within GFF645at 644.196 kb on + strand, within GFF645at 644.204 kb on - strand, within GFF645at 644.218 kb on + strand, within GFF645at 644.226 kb on - strand, within GFF645at 644.241 kb on + strand, within GFF645at 644.249 kb on + strand, within GFF645at 644.249 kb on + strand, within GFF645at 644.262 kb on + strand, within GFF645at 644.267 kb on + strand, within GFF645at 644.271 kb on + strand, within GFF645at 644.288 kb on + strand, within GFF645at 644.334 kb on + strand, within GFF645at 644.350 kb on - strand, within GFF645at 644.354 kb on - strand, within GFF645at 644.390 kb on + strand, within GFF645at 644.396 kb on - strand, within GFF645at 644.396 kb on - strand, within GFF645at 644.411 kb on + strand, within GFF645at 644.418 kb on + strand, within GFF645at 644.421 kb on - strand, within GFF645at 644.426 kb on - strand, within GFF645at 644.426 kb on - strand, within GFF645at 644.426 kb on - strand, within GFF645at 644.428 kb on - strand, within GFF645at 644.434 kb on - strand, within GFF645at 644.445 kb on - strand, within GFF645at 644.519 kb on - strand, within GFF645at 644.532 kb on + strandat 644.535 kb on + strandat 644.543 kb on - strandat 644.543 kb on - strandat 644.568 kb on + strandat 644.568 kb on + strandat 644.573 kb on + strandat 644.581 kb on - strandat 644.581 kb on - strandat 644.608 kb on - strandat 644.618 kb on - strandat 644.625 kb on + strandat 644.625 kb on + strandat 644.625 kb on + strandat 644.625 kb on + strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.654 kb on + strandat 644.661 kb on + strandat 644.661 kb on + strandat 644.669 kb on - strandat 644.676 kb on + strandat 644.712 kb on + strandat 644.732 kb on - strandat 644.795 kb on - strandat 644.812 kb on - strandat 644.812 kb on - strandat 644.812 kb on - strandat 644.950 kb on + strandat 644.950 kb on + strandat 644.956 kb on + strandat 644.961 kb on + strandat 644.961 kb on + strandat 644.964 kb on - strandat 644.969 kb on - strand, within GFF646at 645.001 kb on + strand, within GFF646at 645.033 kb on - strand, within GFF646at 645.034 kb on - strand, within GFF646at 645.035 kb on - strand, within GFF646at 645.043 kb on + strand, within GFF646at 645.044 kb on - strand, within GFF646at 645.051 kb on - strand, within GFF646at 645.078 kb on - strand, within GFF646at 645.131 kb on + strand, within GFF646at 645.163 kb on - strand, within GFF646at 645.235 kb on - strand, within GFF646at 645.257 kb on + strand, within GFF646at 645.272 kb on + strand, within GFF646at 645.322 kb on + strand, within GFF646at 645.322 kb on + strand, within GFF646at 645.322 kb on + strand, within GFF646at 645.323 kb on + strand, within GFF646at 645.337 kb on - strand, within GFF646at 645.350 kb on - strand, within GFF646at 645.399 kb on - strand, within GFF646at 645.439 kb on + strand, within GFF646at 645.439 kb on + strand, within GFF646at 645.447 kb on - strand, within GFF646at 645.447 kb on - strand, within GFF646at 645.447 kb on - strand, within GFF646at 645.448 kb on + strand, within GFF646at 645.459 kb on - strand, within GFF646at 645.488 kb on + strand, within GFF646at 645.498 kb on + strand, within GFF646at 645.506 kb on - strand, within GFF646at 645.506 kb on - strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.556 kb on - strand, within GFF646at 645.561 kb on - strand, within GFF646at 645.561 kb on - strand, within GFF646at 645.561 kb on - strand, within GFF646at 645.596 kb on - strand, within GFF646at 645.596 kb on - strand, within GFF646at 645.632 kb on + strand, within GFF646at 645.679 kb on + strand, within GFF646at 645.697 kb on - strand, within GFF646

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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642,405 - GFF644 0.52 -1.5
642,515 + GFF644 0.65 -1.8
642,528 + GFF644 0.66 -2.2
642,528 - GFF644 0.66 +0.2
642,664 + GFF644 0.82 -0.5
642,723 + GFF644 0.89 -0.9
642,799 + -1.8
642,799 + -0.3
642,807 - -1.0
642,807 - +0.5
642,807 - -0.0
642,814 - -0.3
642,858 + +0.5
642,879 + +0.7
642,885 - +1.2
642,887 - +0.5
642,887 - +0.7
642,922 + +0.9
642,944 + -0.2
642,944 + +0.4
642,944 + -1.7
642,944 + -0.9
642,968 - -1.0
643,055 + -1.9
643,055 + -4.2
643,055 + -4.0
643,055 + -3.0
643,063 - -2.3
643,063 - -1.5
643,073 - -3.1
643,093 + -3.5
643,129 - -4.1
643,159 + GFF645 0.11 -3.3
643,211 + GFF645 0.14 -1.7
643,212 + GFF645 0.14 -2.8
643,219 + GFF645 0.15 -4.0
643,230 + GFF645 0.16 +0.1
643,273 + GFF645 0.18 -1.8
643,273 + GFF645 0.18 -3.7
643,273 + GFF645 0.18 -2.5
643,273 + GFF645 0.18 -2.2
643,273 + GFF645 0.18 -2.5
643,273 + GFF645 0.18 -2.0
643,281 - GFF645 0.18 -0.8
643,281 - GFF645 0.18 -1.6
643,288 + GFF645 0.19 -3.1
643,305 + GFF645 0.20 -1.9
643,308 - GFF645 0.20 -1.2
643,310 + GFF645 0.20 -2.5
643,332 - GFF645 0.21 -2.1
643,334 + GFF645 0.21 -2.5
643,365 + GFF645 0.23 -3.0
643,385 + GFF645 0.24 -2.3
643,396 + GFF645 0.25 -3.0
643,401 + GFF645 0.25 -4.0
643,404 - GFF645 0.26 -2.9
643,404 - GFF645 0.26 -1.8
643,406 + GFF645 0.26 -2.3
643,414 - GFF645 0.26 -4.5
643,416 + GFF645 0.26 -3.8
643,426 - GFF645 0.27 -3.8
643,453 + GFF645 0.28 -3.2
643,477 - GFF645 0.30 -2.8
643,487 - GFF645 0.30 -3.6
643,529 + GFF645 0.33 -4.4
643,547 + GFF645 0.34 -3.0
643,548 + GFF645 0.34 -1.8
643,548 + GFF645 0.34 -3.0
643,554 - GFF645 0.34 -1.3
643,556 - GFF645 0.34 -2.1
643,556 - GFF645 0.34 -0.4
643,556 - GFF645 0.34 -3.1
643,562 - GFF645 0.35 -1.4
643,562 - GFF645 0.35 -3.0
643,565 + GFF645 0.35 -2.2
643,567 - GFF645 0.35 -0.3
643,569 - GFF645 0.35 -1.4
643,569 - GFF645 0.35 -2.5
643,569 - GFF645 0.35 -3.0
643,590 + GFF645 0.36 -1.6
643,600 - GFF645 0.37 -1.2
643,641 - GFF645 0.39 -1.4
643,645 - GFF645 0.39 -2.2
643,645 - GFF645 0.39 -0.0
643,645 - GFF645 0.39 -3.8
643,645 - GFF645 0.39 -2.8
643,645 - GFF645 0.39 -3.0
643,668 - GFF645 0.41 -2.4
643,713 - GFF645 0.43 -2.5
643,727 + GFF645 0.44 -4.3
643,743 - GFF645 0.45 -4.6
643,757 + GFF645 0.46 -2.4
643,757 + GFF645 0.46 -2.8
643,774 + GFF645 0.47 -2.2
643,774 + GFF645 0.47 -1.5
643,780 + GFF645 0.47 -0.8
643,799 - GFF645 0.48 -2.5
643,808 - GFF645 0.49 -2.8
643,808 - GFF645 0.49 -2.9
643,838 + GFF645 0.50 -3.4
643,838 + GFF645 0.50 -2.7
643,838 + GFF645 0.50 -3.9
643,838 + GFF645 0.50 -1.5
643,846 - GFF645 0.51 -2.6
643,846 - GFF645 0.51 -3.1
643,846 - GFF645 0.51 -2.5
643,846 - GFF645 0.51 -0.3
643,846 - GFF645 0.51 -2.1
643,846 - GFF645 0.51 -2.5
643,848 + GFF645 0.51 -3.4
643,855 + GFF645 0.51 +0.1
643,855 + GFF645 0.51 -4.8
643,857 - GFF645 0.52 -3.7
643,857 - GFF645 0.52 -3.0
643,900 - GFF645 0.54 -2.6
643,914 - GFF645 0.55 -2.8
643,938 + GFF645 0.56 -2.0
643,939 + GFF645 0.56 -4.4
643,946 - GFF645 0.57 -2.3
643,946 - GFF645 0.57 -3.7
643,963 - GFF645 0.58 -0.6
643,980 - GFF645 0.59 -2.0
644,007 + GFF645 0.60 -3.5
644,008 + GFF645 0.60 -3.6
644,023 - GFF645 0.61 -2.4
644,044 + GFF645 0.62 -2.3
644,071 + GFF645 0.64 -1.8
644,079 - GFF645 0.64 -2.6
644,079 - GFF645 0.64 -2.6
644,079 - GFF645 0.64 -2.6
644,079 - GFF645 0.64 -2.3
644,079 - GFF645 0.64 -2.5
644,079 - GFF645 0.64 -2.0
644,092 + GFF645 0.65 -3.1
644,094 + GFF645 0.65 -1.8
644,102 - GFF645 0.66 -2.9
644,104 + GFF645 0.66 -2.3
644,104 + GFF645 0.66 -2.3
644,104 + GFF645 0.66 -2.9
644,114 + GFF645 0.66 -1.5
644,129 + GFF645 0.67 -4.6
644,129 + GFF645 0.67 -3.5
644,131 - GFF645 0.67 +0.2
644,131 - GFF645 0.67 -3.4
644,131 - GFF645 0.67 -2.4
644,133 - GFF645 0.67 -1.8
644,135 + GFF645 0.68 -2.0
644,141 - GFF645 0.68 -1.2
644,142 - GFF645 0.68 -2.6
644,142 - GFF645 0.68 -4.0
644,143 - GFF645 0.68 -3.3
644,159 + GFF645 0.69 -1.3
644,167 - GFF645 0.69 -1.2
644,196 + GFF645 0.71 -4.2
644,196 + GFF645 0.71 -1.7
644,204 - GFF645 0.71 -2.0
644,218 + GFF645 0.72 -2.5
644,226 - GFF645 0.73 -1.7
644,241 + GFF645 0.74 -3.0
644,249 + GFF645 0.74 -2.5
644,249 + GFF645 0.74 -1.9
644,262 + GFF645 0.75 -3.4
644,267 + GFF645 0.75 -3.1
644,271 + GFF645 0.75 -1.4
644,288 + GFF645 0.76 -3.0
644,334 + GFF645 0.79 -0.8
644,350 - GFF645 0.80 -3.1
644,354 - GFF645 0.80 -0.5
644,390 + GFF645 0.82 -3.2
644,396 - GFF645 0.83 -4.0
644,396 - GFF645 0.83 -2.9
644,411 + GFF645 0.83 -2.6
644,418 + GFF645 0.84 -2.9
644,421 - GFF645 0.84 -0.4
644,426 - GFF645 0.84 -2.7
644,426 - GFF645 0.84 -2.7
644,426 - GFF645 0.84 -3.0
644,428 - GFF645 0.84 -2.8
644,434 - GFF645 0.85 -3.6
644,445 - GFF645 0.85 -1.9
644,519 - GFF645 0.90 -3.2
644,532 + -2.7
644,535 + -3.6
644,543 - -2.2
644,543 - -1.4
644,568 + -3.0
644,568 + -3.2
644,573 + -3.8
644,581 - -0.3
644,581 - +0.7
644,608 - -1.7
644,618 - -2.1
644,625 + -3.3
644,625 + +0.2
644,625 + -3.5
644,625 + -2.6
644,633 - -2.6
644,633 - -3.3
644,633 - -0.1
644,633 - -2.4
644,633 - -2.8
644,633 - -2.0
644,654 + -2.9
644,661 + -2.0
644,661 + -2.3
644,669 - -2.5
644,676 + -2.7
644,712 + -1.5
644,732 - -1.6
644,795 - -0.1
644,812 - -0.2
644,812 - -3.6
644,812 - +0.9
644,950 + -0.4
644,950 + +0.8
644,956 + -1.3
644,961 + +0.6
644,961 + -2.1
644,964 - -1.0
644,969 - GFF646 0.10 -0.2
645,001 + GFF646 0.13 -0.8
645,033 - GFF646 0.16 -2.7
645,034 - GFF646 0.16 +1.7
645,035 - GFF646 0.16 -1.9
645,043 + GFF646 0.17 -3.3
645,044 - GFF646 0.17 -0.8
645,051 - GFF646 0.17 -1.8
645,078 - GFF646 0.19 -0.8
645,131 + GFF646 0.24 -0.3
645,163 - GFF646 0.26 -2.0
645,235 - GFF646 0.32 -1.7
645,257 + GFF646 0.34 -1.8
645,272 + GFF646 0.35 +0.2
645,322 + GFF646 0.40 -2.3
645,322 + GFF646 0.40 -1.7
645,322 + GFF646 0.40 -1.1
645,323 + GFF646 0.40 -1.8
645,337 - GFF646 0.41 +0.0
645,350 - GFF646 0.42 -0.5
645,399 - GFF646 0.46 -0.7
645,439 + GFF646 0.49 -0.5
645,439 + GFF646 0.49 -1.8
645,447 - GFF646 0.50 -1.8
645,447 - GFF646 0.50 -0.5
645,447 - GFF646 0.50 -2.4
645,448 + GFF646 0.50 -2.6
645,459 - GFF646 0.51 -2.2
645,488 + GFF646 0.53 -0.3
645,498 + GFF646 0.54 -1.9
645,506 - GFF646 0.55 -2.0
645,506 - GFF646 0.55 +0.0
645,553 + GFF646 0.59 -0.1
645,553 + GFF646 0.59 -1.1
645,553 + GFF646 0.59 +1.5
645,553 + GFF646 0.59 -1.0
645,553 + GFF646 0.59 -1.0
645,553 + GFF646 0.59 -1.2
645,553 + GFF646 0.59 -0.8
645,556 - GFF646 0.59 -0.1
645,561 - GFF646 0.59 -1.9
645,561 - GFF646 0.59 -1.5
645,561 - GFF646 0.59 -0.0
645,596 - GFF646 0.62 -0.7
645,596 - GFF646 0.62 -0.6
645,632 + GFF646 0.65 -2.7
645,679 + GFF646 0.69 -3.2
645,697 - GFF646 0.70 -0.1

Or see this region's nucleotide sequence