Strain Fitness in Sphingobium sp. HT1-2 around GFF643

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF641 and GFF642 are separated by 143 nucleotidesGFF642 and GFF643 are separated by 143 nucleotidesGFF643 and GFF644 are separated by 177 nucleotides GFF641 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 639,005 to 640,513 GFF641 GFF642 - hypothetical protein, at 640,657 to 641,262 GFF642 GFF643 - ATP-dependent Clp protease adaptor protein ClpS, at 641,406 to 641,777 GFF643 GFF644 - hypothetical protein, at 641,955 to 642,818 GFF644 Position (kb) 641 642Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 640.411 kb on + strandat 640.419 kb on - strandat 640.443 kb on + strandat 640.451 kb on + strandat 640.451 kb on - strandat 640.452 kb on - strandat 640.459 kb on - strandat 640.461 kb on - strandat 640.462 kb on - strandat 640.474 kb on + strandat 640.474 kb on + strandat 640.474 kb on + strandat 640.474 kb on - strandat 640.482 kb on - strandat 640.482 kb on - strandat 640.482 kb on - strandat 640.482 kb on - strandat 640.528 kb on - strandat 640.608 kb on - strandat 640.639 kb on + strandat 640.639 kb on + strandat 640.639 kb on + strandat 640.639 kb on + strandat 640.639 kb on + strandat 640.639 kb on + strandat 640.639 kb on + strandat 640.641 kb on + strandat 640.647 kb on - strandat 640.665 kb on + strandat 640.667 kb on - strandat 640.739 kb on - strand, within GFF642at 640.739 kb on - strand, within GFF642at 640.795 kb on + strand, within GFF642at 640.795 kb on + strand, within GFF642at 640.804 kb on + strand, within GFF642at 640.809 kb on + strand, within GFF642at 640.812 kb on - strand, within GFF642at 640.819 kb on + strand, within GFF642at 640.845 kb on - strand, within GFF642at 640.845 kb on - strand, within GFF642at 640.873 kb on + strand, within GFF642at 640.935 kb on - strand, within GFF642at 640.935 kb on - strand, within GFF642at 640.942 kb on - strand, within GFF642at 640.955 kb on - strand, within GFF642at 640.957 kb on + strand, within GFF642at 640.979 kb on + strand, within GFF642at 640.989 kb on - strand, within GFF642at 641.076 kb on + strand, within GFF642at 641.086 kb on + strand, within GFF642at 641.103 kb on - strand, within GFF642at 641.107 kb on - strand, within GFF642at 641.168 kb on + strand, within GFF642at 641.356 kb on + strandat 641.377 kb on + strandat 641.385 kb on - strandat 641.447 kb on + strand, within GFF643at 641.465 kb on - strand, within GFF643at 641.481 kb on - strand, within GFF643at 641.494 kb on + strand, within GFF643at 641.497 kb on - strand, within GFF643at 641.497 kb on - strand, within GFF643at 641.497 kb on - strand, within GFF643at 641.511 kb on + strand, within GFF643at 641.513 kb on + strand, within GFF643at 641.521 kb on - strand, within GFF643at 641.531 kb on - strand, within GFF643at 641.540 kb on + strand, within GFF643at 641.547 kb on - strand, within GFF643at 641.548 kb on - strand, within GFF643at 641.559 kb on + strand, within GFF643at 641.559 kb on + strand, within GFF643at 641.559 kb on + strand, within GFF643at 641.567 kb on - strand, within GFF643at 641.612 kb on - strand, within GFF643at 641.631 kb on + strand, within GFF643at 641.648 kb on - strand, within GFF643at 641.649 kb on - strand, within GFF643at 641.666 kb on + strand, within GFF643at 641.672 kb on + strand, within GFF643at 641.680 kb on - strand, within GFF643at 641.699 kb on + strand, within GFF643at 641.713 kb on + strand, within GFF643at 641.718 kb on + strand, within GFF643at 641.728 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.766 kb on - strandat 641.766 kb on - strandat 641.819 kb on - strandat 641.848 kb on - strandat 641.848 kb on - strandat 641.876 kb on + strandat 641.884 kb on - strandat 641.894 kb on + strandat 642.405 kb on - strand, within GFF644at 642.515 kb on + strand, within GFF644at 642.528 kb on + strand, within GFF644at 642.528 kb on - strand, within GFF644at 642.664 kb on + strand, within GFF644at 642.723 kb on + strand, within GFF644

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
640,411 + +0.0
640,419 - +1.2
640,443 + -2.4
640,451 + -1.0
640,451 - +0.2
640,452 - +0.9
640,459 - +1.0
640,461 - +0.1
640,462 - -0.2
640,474 + -0.5
640,474 + -0.1
640,474 + +0.8
640,474 - -0.8
640,482 - +0.3
640,482 - -0.4
640,482 - -1.2
640,482 - +1.4
640,528 - +0.5
640,608 - +0.6
640,639 + +2.9
640,639 + +0.2
640,639 + +0.6
640,639 + +0.4
640,639 + +0.2
640,639 + +0.7
640,639 + +0.6
640,641 + -0.4
640,647 - -2.0
640,665 + -0.2
640,667 - -0.3
640,739 - GFF642 0.14 -0.3
640,739 - GFF642 0.14 -1.3
640,795 + GFF642 0.23 -1.0
640,795 + GFF642 0.23 -0.4
640,804 + GFF642 0.24 -1.7
640,809 + GFF642 0.25 -1.0
640,812 - GFF642 0.26 +0.5
640,819 + GFF642 0.27 +0.4
640,845 - GFF642 0.31 +0.2
640,845 - GFF642 0.31 -2.1
640,873 + GFF642 0.36 +1.4
640,935 - GFF642 0.46 +0.2
640,935 - GFF642 0.46 -1.0
640,942 - GFF642 0.47 +0.4
640,955 - GFF642 0.49 -0.0
640,957 + GFF642 0.50 -0.8
640,979 + GFF642 0.53 +0.1
640,989 - GFF642 0.55 -0.6
641,076 + GFF642 0.69 +1.2
641,086 + GFF642 0.71 -0.1
641,103 - GFF642 0.74 +0.2
641,107 - GFF642 0.74 -2.5
641,168 + GFF642 0.84 -0.6
641,356 + -3.0
641,377 + -1.6
641,385 - +0.9
641,447 + GFF643 0.11 -0.5
641,465 - GFF643 0.16 -2.3
641,481 - GFF643 0.20 +0.7
641,494 + GFF643 0.24 -0.3
641,497 - GFF643 0.24 +1.6
641,497 - GFF643 0.24 -0.1
641,497 - GFF643 0.24 +0.1
641,511 + GFF643 0.28 -0.3
641,513 + GFF643 0.29 -1.1
641,521 - GFF643 0.31 -0.0
641,531 - GFF643 0.34 +2.0
641,540 + GFF643 0.36 -0.2
641,547 - GFF643 0.38 -0.3
641,548 - GFF643 0.38 +0.6
641,559 + GFF643 0.41 -0.3
641,559 + GFF643 0.41 -1.0
641,559 + GFF643 0.41 -0.5
641,567 - GFF643 0.43 -1.2
641,612 - GFF643 0.55 +1.3
641,631 + GFF643 0.60 -1.8
641,648 - GFF643 0.65 +0.5
641,649 - GFF643 0.65 +1.2
641,666 + GFF643 0.70 -2.5
641,672 + GFF643 0.72 -1.2
641,680 - GFF643 0.74 -0.1
641,699 + GFF643 0.79 -0.5
641,713 + GFF643 0.83 +0.5
641,718 + GFF643 0.84 -0.5
641,728 + GFF643 0.87 -1.1
641,734 + GFF643 0.88 +0.9
641,734 + GFF643 0.88 -0.5
641,734 + GFF643 0.88 -0.3
641,734 + GFF643 0.88 -0.0
641,734 + GFF643 0.88 +0.5
641,734 + GFF643 0.88 +0.5
641,734 + GFF643 0.88 -0.5
641,734 + GFF643 0.88 -2.1
641,734 + GFF643 0.88 -1.0
641,734 + GFF643 0.88 +1.3
641,734 + GFF643 0.88 -0.8
641,742 - -0.1
641,742 - -0.7
641,742 - -0.9
641,742 - +1.6
641,742 - +0.8
641,742 - +1.6
641,742 - -2.6
641,742 - -0.7
641,742 - -1.1
641,742 - +1.9
641,742 - +1.1
641,766 - +0.1
641,766 - -0.2
641,819 - -1.1
641,848 - -0.4
641,848 - +0.6
641,876 + -0.6
641,884 - +1.5
641,894 + -1.2
642,405 - GFF644 0.52 -1.5
642,515 + GFF644 0.65 -1.8
642,528 + GFF644 0.66 -2.2
642,528 - GFF644 0.66 +0.2
642,664 + GFF644 0.82 -0.5
642,723 + GFF644 0.89 -0.9

Or see this region's nucleotide sequence